Wall clock time and date at job start Tue Mar 31 2020 20:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.87110 * 2 1 4 4 C 1.54326 * 109.88265 * 121.17401 * 2 1 3 5 5 H 1.08995 * 110.72051 * 259.97690 * 4 2 1 6 6 N 1.46496 * 110.71847 * 23.25226 * 4 2 1 7 7 C 1.36940 * 119.99850 * 205.00078 * 6 4 2 8 8 H 1.07997 * 120.00046 * 359.97438 * 7 6 4 9 9 C 1.38814 * 119.99961 * 179.97438 * 7 6 4 10 10 N 1.31613 * 120.00039 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00017 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46879 * 90.00200 * 11 9 7 13 13 H 1.48497 * 109.47413 * 210.00016 * 11 9 7 14 14 H 1.48507 * 109.47235 * 330.00460 * 11 9 7 15 15 C 1.55156 * 102.94124 * 141.61470 * 4 2 1 16 16 C 1.55136 * 101.48512 * 324.33216 * 15 4 2 17 17 N 1.47024 * 109.88705 * 238.98697 * 2 1 3 18 18 C 1.34772 * 125.64724 * 61.60039 * 17 2 1 19 19 O 1.21279 * 120.00292 * 0.02562 * 18 17 2 20 20 C 1.50701 * 119.99711 * 180.02562 * 18 17 2 21 21 N 1.46511 * 109.46927 * 180.02562 * 20 18 17 22 22 C 1.34771 * 119.99871 * 180.02562 * 21 20 18 23 23 O 1.21702 * 120.00117 * 359.97438 * 22 21 20 24 24 C 1.46575 * 120.00045 * 179.97438 * 22 21 20 25 25 C 1.36655 * 125.46205 * 179.97438 * 24 22 21 26 26 C 1.37467 * 113.29840 * 179.73918 * 25 24 22 27 27 C 1.33819 * 115.10375 * 359.97438 * 26 25 24 28 28 S 1.70616 * 110.95280 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46854 * 179.55930 * 1 2 3 30 30 H 1.08994 * 109.47206 * 299.56019 * 1 2 3 31 31 H 1.08995 * 109.47011 * 59.56298 * 1 2 3 32 32 H 0.96995 * 120.00253 * 24.99470 * 6 4 2 33 33 H 0.96996 * 120.00452 * 179.97438 * 10 9 7 34 34 H 1.08995 * 111.00875 * 82.57291 * 15 4 2 35 35 H 1.08998 * 111.00579 * 206.38976 * 15 4 2 36 36 H 1.08998 * 110.49316 * 278.45389 * 16 15 4 37 37 H 1.08998 * 110.34358 * 156.06090 * 16 15 4 38 38 H 1.08997 * 109.47467 * 60.00159 * 20 18 17 39 39 H 1.08998 * 109.47259 * 299.99584 * 20 18 17 40 40 H 0.97001 * 119.99736 * 359.97438 * 21 20 18 41 41 H 1.07999 * 123.34463 * 359.77453 * 25 24 22 42 42 H 1.08000 * 122.44665 * 179.97438 * 26 25 24 43 43 H 1.07995 * 124.52302 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 1.2417 5 1 2.3528 -0.0488 2.0200 6 7 1.0472 -1.6880 1.7450 7 6 1.0606 -2.0660 3.0611 8 1 1.8143 -1.6739 3.7279 9 6 0.1056 -2.9532 3.5382 10 7 -0.8126 -3.4314 2.7255 11 14 0.1243 -3.4695 5.3333 12 1 -0.7102 -2.5317 6.1268 13 1 -0.4213 -4.8449 5.4586 14 1 1.5194 -3.4421 5.8418 15 6 3.2877 -1.5151 0.6903 16 6 2.8100 -1.8814 -0.7395 17 7 2.0301 -0.7123 -1.1849 18 6 1.8075 -0.3585 -2.4662 19 8 1.1436 0.6249 -2.7171 20 6 2.3835 -1.1849 -3.5870 21 7 2.0024 -0.5964 -4.8734 22 6 2.4071 -1.1706 -6.0235 23 8 3.0897 -2.1778 -5.9935 24 6 2.0254 -0.5821 -7.3105 25 6 2.3727 -1.0691 -8.5392 26 6 1.8739 -0.3233 -9.5806 27 6 1.1427 0.7378 -9.2198 28 16 1.0406 0.8593 -7.5210 29 1 -0.3633 -1.0277 -0.0079 30 1 -0.3633 0.5070 0.8938 31 1 -0.3633 0.5206 -0.8860 32 1 0.3705 -2.0403 1.1461 33 1 -1.4798 -4.0517 3.0587 34 1 4.1654 -0.8697 0.6592 35 1 3.4857 -2.4124 1.2766 36 1 2.1803 -2.7708 -0.7153 37 1 3.6656 -2.0391 -1.3961 38 1 1.9974 -2.2023 -3.5239 39 1 3.4701 -1.2029 -3.5039 40 1 1.4581 0.2062 -4.8973 41 1 2.9784 -1.9525 -8.6781 42 1 2.0586 -0.5753 -10.6144 43 1 0.6792 1.4255 -9.9115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180070423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:24 Heat of formation + Delta-G solvation = -32.472553 kcal Electronic energy + Delta-G solvation = -26279.108984 eV Core-core repulsion = 22450.855432 eV Total energy + Delta-G solvation = -3828.253552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60803 -40.70799 -39.04385 -38.37026 -35.78566 -35.67296 -33.46561 -32.25947 -31.42949 -30.65076 -28.61722 -26.75329 -25.80234 -25.39644 -23.75213 -22.42692 -21.34735 -20.65359 -19.99313 -19.52744 -19.36382 -17.95411 -17.61981 -17.28205 -16.88756 -16.72401 -16.35153 -16.19738 -15.66776 -15.60215 -15.21988 -14.77130 -14.62962 -14.45499 -14.03329 -13.96462 -13.77392 -13.69499 -13.60381 -13.24274 -13.17866 -12.96959 -12.87817 -12.53842 -12.37538 -12.24426 -12.04963 -11.93064 -11.66217 -11.44788 -11.39374 -11.01913 -10.91287 -10.49197 -9.88081 -9.72755 -9.56664 -8.98453 -7.91231 -5.18996 -0.52463 0.46934 0.93123 1.36651 1.41318 1.50773 1.51281 1.55901 1.59399 2.08292 2.19828 2.58620 3.25204 3.42234 3.69633 3.74301 3.87530 3.97940 4.13361 4.16550 4.25983 4.28610 4.31887 4.34603 4.40744 4.54338 4.58229 4.71279 4.82014 4.94681 4.99263 5.02424 5.07635 5.20459 5.23199 5.33660 5.36089 5.36848 5.45054 5.58862 6.22088 6.30342 6.43774 6.88467 6.95110 7.37933 8.11958 8.34878 9.31988 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.026546 B = 0.002125 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.514407 B =13176.173287 C =13333.782883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.132 3.868 3 H 0.087 0.913 4 C 0.162 3.838 5 H 0.077 0.923 6 N -0.724 5.724 7 C -0.232 4.232 8 H 0.081 0.919 9 C -0.075 4.075 10 N -0.969 5.969 11 Si 0.968 3.032 12 H -0.292 1.292 13 H -0.302 1.302 14 H -0.267 1.267 15 C -0.147 4.147 16 C 0.101 3.899 17 N -0.600 5.600 18 C 0.524 3.476 19 O -0.569 6.569 20 C 0.110 3.890 21 N -0.712 5.712 22 C 0.593 3.407 23 O -0.565 6.565 24 C -0.306 4.306 25 C -0.052 4.052 26 C -0.159 4.159 27 C -0.215 4.215 28 S 0.218 5.782 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.376 0.624 33 H 0.248 0.752 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.412 0.588 41 H 0.153 0.847 42 H 0.173 0.827 43 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.199 9.608 -23.037 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.029 3.971 3 H 0.105 0.895 4 C 0.052 3.948 5 H 0.095 0.905 6 N -0.365 5.365 7 C -0.364 4.364 8 H 0.099 0.901 9 C -0.267 4.267 10 N -0.620 5.620 11 Si 0.798 3.202 12 H -0.220 1.220 13 H -0.229 1.229 14 H -0.192 1.192 15 C -0.187 4.187 16 C -0.020 4.020 17 N -0.333 5.333 18 C 0.312 3.688 19 O -0.449 6.449 20 C -0.017 4.017 21 N -0.366 5.366 22 C 0.381 3.619 23 O -0.447 6.447 24 C -0.426 4.426 25 C -0.087 4.087 26 C -0.189 4.189 27 C -0.353 4.353 28 S 0.486 5.514 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.211 0.789 33 H 0.057 0.943 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.250 0.750 41 H 0.171 0.829 42 H 0.190 0.810 43 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 7.647 10.462 -21.995 25.529 hybrid contribution -0.298 -1.440 0.004 1.470 sum 7.349 9.022 -21.991 24.880 Atomic orbital electron populations 1.21770 0.95574 1.01041 1.01178 1.21913 0.94225 0.96369 0.84630 0.89481 1.21433 0.89239 0.91361 0.92777 0.90549 1.42681 1.33687 1.52135 1.08024 1.19626 1.09770 1.19583 0.87419 0.90073 1.25477 0.98423 1.01326 1.01457 1.69808 1.19559 1.36882 1.35781 0.85214 0.77823 0.76416 0.80722 1.21967 1.22905 1.19188 1.23412 0.98762 1.01905 0.94648 1.22512 0.95332 0.87299 0.96897 1.48565 1.51709 1.28594 1.04426 1.20273 0.80312 0.85105 0.83071 1.90652 1.41702 1.29129 1.83442 1.21091 1.02474 0.97273 0.80854 1.45577 1.55127 1.31431 1.04494 1.17186 0.78883 0.82909 0.82892 1.90812 1.40205 1.25966 1.87669 1.24491 1.14752 1.06480 0.96864 1.21058 0.97620 1.00079 0.89911 1.20291 1.00997 0.95880 1.01722 1.25822 1.05094 1.03947 1.00422 1.83293 1.45534 1.21345 1.01257 0.94137 0.92274 0.92780 0.78903 0.94294 0.88745 0.90647 0.92357 0.87643 0.87720 0.86375 0.75011 0.82930 0.80997 0.78253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.04 8.51 71.98 0.61 -4.43 16 2 C 0.13 4.25 3.42 45.34 0.16 4.41 16 3 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 4 C 0.16 5.62 3.48 46.18 0.16 5.78 16 5 H 0.08 2.59 8.09 -2.39 -0.02 2.57 16 6 N -0.72 -33.12 4.54 -317.34 -1.44 -34.56 16 7 C -0.23 -11.91 9.96 84.03 0.84 -11.07 16 8 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 9 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 10 N -0.97 -57.57 13.06 21.65 0.28 -57.29 16 11 Si 0.97 44.65 29.55 68.60 2.03 46.68 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 C -0.15 -4.11 6.78 32.07 0.22 -3.89 16 16 C 0.10 2.64 6.68 86.94 0.58 3.22 16 17 N -0.60 -17.24 3.06 -787.62 -2.41 -19.65 16 18 C 0.52 14.91 7.71 87.66 0.68 15.59 16 19 O -0.57 -18.93 14.70 -3.03 -0.04 -18.97 16 20 C 0.11 2.61 5.16 85.63 0.44 3.06 16 21 N -0.71 -17.30 5.52 -470.90 -2.60 -19.90 16 22 C 0.59 15.34 7.78 86.42 0.67 16.01 16 23 O -0.57 -17.80 16.84 -4.36 -0.07 -17.88 16 24 C -0.31 -6.35 6.45 24.08 0.16 -6.19 16 25 C -0.05 -0.91 10.01 21.72 0.22 -0.69 16 26 C -0.16 -1.88 10.15 21.08 0.21 -1.67 16 27 C -0.22 -2.27 10.92 66.81 0.73 -1.54 16 28 S 0.22 3.26 22.16 -56.49 -1.25 2.01 16 29 H 0.04 1.69 6.20 -2.39 -0.01 1.68 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.05 1.96 6.88 -2.39 -0.02 1.94 16 32 H 0.38 19.03 5.67 -92.71 -0.53 18.50 16 33 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.11 2.01 7.48 -2.39 -0.02 1.99 16 38 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.12 2.41 7.85 -2.39 -0.02 2.39 16 40 H 0.41 9.70 6.55 -92.71 -0.61 9.09 16 41 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 42 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 43 H 0.20 0.84 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -68.58 371.17 0.54 -68.04 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.08 Total: 36.57 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 6.14 Total: 14.95 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -6.17 Total: -131.40 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.12 Total: -36.85 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.25 Total: 2.01 kcal Total: -68.58 0.54 -68.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180070423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.566 kcal (2) G-P(sol) polarization free energy of solvation -68.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds