Wall clock time and date at job start Tue Mar 31 2020 20:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 110.00184 * 2 1 4 4 C 1.54330 * 109.88118 * 121.09200 * 2 1 3 5 5 H 1.08999 * 110.87123 * 260.04368 * 4 2 1 6 6 N 1.46496 * 110.71756 * 23.24593 * 4 2 1 7 7 C 1.36939 * 120.00087 * 264.40573 * 6 4 2 8 8 H 1.07996 * 119.99800 * 0.02562 * 7 6 4 9 9 C 1.38811 * 120.00105 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00004 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99985 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47395 * 270.00154 * 11 9 7 13 13 H 1.48498 * 109.47077 * 150.00278 * 11 9 7 14 14 H 1.48505 * 109.46978 * 30.00418 * 11 9 7 15 15 C 1.55161 * 102.94239 * 141.61057 * 4 2 1 16 16 C 1.54907 * 101.58301 * 324.49827 * 15 4 2 17 17 N 1.47026 * 109.88491 * 238.89623 * 2 1 3 18 18 C 1.34775 * 125.64514 * 61.60079 * 17 2 1 19 19 O 1.21281 * 120.00062 * 0.02768 * 18 17 2 20 20 C 1.50696 * 120.00176 * 180.02562 * 18 17 2 21 21 N 1.46496 * 109.47491 * 179.97438 * 20 18 17 22 22 C 1.34772 * 120.00232 * 179.97438 * 21 20 18 23 23 O 1.21644 * 119.99913 * 0.02562 * 22 21 20 24 24 C 1.47190 * 120.00381 * 180.02562 * 22 21 20 25 25 C 1.44423 * 123.46708 * 180.02562 * 24 22 21 26 26 C 1.32768 * 113.09004 * 179.97438 * 25 24 22 27 27 S 1.75505 * 110.57009 * 359.97438 * 26 25 24 28 28 C 1.36008 * 123.45964 * 359.70487 * 24 22 21 29 29 H 1.08996 * 109.47355 * 293.64696 * 1 2 3 30 30 H 1.09008 * 109.47030 * 53.64452 * 1 2 3 31 31 H 1.08997 * 109.47318 * 173.63926 * 1 2 3 32 32 H 0.97001 * 119.99867 * 84.41609 * 6 4 2 33 33 H 0.97008 * 119.99970 * 359.97438 * 10 9 7 34 34 H 1.09003 * 111.00498 * 82.57585 * 15 4 2 35 35 H 1.08997 * 111.00276 * 206.38458 * 15 4 2 36 36 H 1.08994 * 110.36774 * 155.84733 * 16 15 4 37 37 H 1.09007 * 110.36852 * 278.06493 * 16 15 4 38 38 H 1.09003 * 109.47386 * 300.00308 * 20 18 17 39 39 H 1.09002 * 109.47012 * 59.99447 * 20 18 17 40 40 H 0.96998 * 120.00122 * 359.97438 * 21 20 18 41 41 H 1.08009 * 123.45221 * 359.97438 * 25 24 22 42 42 H 1.07991 * 124.71581 * 180.02562 * 26 25 24 43 43 H 1.08008 * 124.59000 * 0.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.3524 -0.0481 2.0223 6 7 1.0470 -1.6854 1.7475 7 6 0.2101 -1.3080 2.7636 8 1 0.2927 -0.3204 3.1925 9 6 -0.7444 -2.1950 3.2422 10 7 -0.8447 -3.3989 2.7197 11 14 -1.8866 -1.6800 4.6277 12 1 -1.2694 -2.0272 5.9330 13 1 -3.1838 -2.3893 4.4893 14 1 -2.1145 -0.2140 4.5622 15 6 3.2876 -1.5143 0.6926 16 6 2.8145 -1.8795 -0.7366 17 7 2.0300 -0.7142 -1.1838 18 6 1.8073 -0.3624 -2.4656 19 8 1.1434 0.6207 -2.7181 20 6 2.3832 -1.1905 -3.5853 21 7 2.0010 -0.6046 -4.8725 22 6 2.4064 -1.1802 -6.0217 23 8 3.0893 -2.1864 -5.9902 24 6 2.0229 -0.5913 -7.3150 25 6 2.4147 -1.1453 -8.5899 26 6 1.9551 -0.4499 -9.6233 27 16 1.0139 0.9249 -9.0717 28 6 1.2579 0.5271 -7.4324 29 1 -0.3634 0.4122 0.9413 30 1 -0.3633 0.6092 -0.8277 31 1 -0.3634 -1.0213 -0.1138 32 1 0.9728 -2.5724 1.3621 33 1 -0.2518 -3.6662 2.0000 34 1 4.1654 -0.8689 0.6606 35 1 3.4855 -2.4106 1.2803 36 1 3.6716 -2.0340 -1.3920 37 1 2.1901 -2.7727 -0.7129 38 1 3.4699 -1.2084 -3.5021 39 1 1.9971 -2.2078 -3.5205 40 1 1.4562 0.1975 -4.8976 41 1 3.0196 -2.0343 -8.6921 42 1 2.1346 -0.6964 -10.6592 43 1 0.8605 1.0884 -6.5995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180177908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:35 Heat of formation + Delta-G solvation = -15.448843 kcal Electronic energy + Delta-G solvation = -26444.401019 eV Core-core repulsion = 22616.885671 eV Total energy + Delta-G solvation = -3827.515348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.49314 -39.71456 -37.78195 -37.03484 -34.64237 -34.37396 -31.83200 -30.94246 -30.48152 -29.00077 -27.38697 -25.26178 -25.06186 -23.37056 -22.61290 -21.57240 -20.24953 -19.71880 -18.81516 -18.29244 -17.70849 -17.41989 -16.53293 -16.18426 -16.01079 -15.41863 -15.01755 -14.76389 -14.47903 -14.08160 -13.71757 -13.67486 -13.45674 -13.36662 -13.33226 -12.95183 -12.83397 -12.77609 -12.54175 -12.42810 -11.66525 -11.49539 -11.37361 -10.95112 -10.79669 -10.72466 -10.51296 -10.23142 -10.21113 -10.05227 -9.77274 -9.48602 -9.36347 -9.27169 -9.02071 -8.80366 -8.46562 -7.16908 -6.18522 -3.20475 0.40227 1.16016 1.53835 1.67695 2.59438 2.67112 3.11292 3.30215 3.47596 3.51407 3.65483 4.35291 4.42714 4.58892 4.68505 4.81643 4.88081 5.00871 5.07866 5.19643 5.23350 5.26032 5.41588 5.43876 5.57784 5.61880 5.70521 5.71336 5.88951 5.92173 6.03831 6.06070 6.14325 6.27480 6.38844 6.50029 6.67858 6.87158 7.18156 7.25527 7.65261 7.71816 7.95588 8.16043 8.65896 9.09623 9.96278 10.09848 11.28931 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022008 B = 0.002164 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.977279 B =12934.001356 C =13370.598362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.108 3.892 3 H 0.063 0.937 4 C 0.176 3.824 5 H 0.077 0.923 6 N -0.720 5.720 7 C -0.332 4.332 8 H 0.067 0.933 9 C -0.041 4.041 10 N -0.940 5.940 11 Si 1.080 2.920 12 H -0.295 1.295 13 H -0.288 1.288 14 H -0.294 1.294 15 C -0.146 4.146 16 C 0.097 3.903 17 N -0.598 5.598 18 C 0.520 3.480 19 O -0.546 6.546 20 C 0.105 3.895 21 N -0.711 5.711 22 C 0.580 3.420 23 O -0.538 6.538 24 C -0.154 4.154 25 C -0.084 4.084 26 C -0.238 4.238 27 S 0.188 5.812 28 C -0.208 4.208 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.368 0.632 33 H 0.255 0.745 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.410 0.590 41 H 0.155 0.845 42 H 0.171 0.829 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.311 7.534 -21.300 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.003 3.997 3 H 0.081 0.919 4 C 0.063 3.937 5 H 0.095 0.905 6 N -0.360 5.360 7 C -0.462 4.462 8 H 0.085 0.915 9 C -0.239 4.239 10 N -0.585 5.585 11 Si 0.911 3.089 12 H -0.223 1.223 13 H -0.214 1.214 14 H -0.221 1.221 15 C -0.185 4.185 16 C -0.026 4.026 17 N -0.331 5.331 18 C 0.308 3.692 19 O -0.425 6.425 20 C -0.022 4.022 21 N -0.366 5.366 22 C 0.365 3.635 23 O -0.416 6.416 24 C -0.173 4.173 25 C -0.113 4.113 26 C -0.373 4.373 27 S 0.454 5.546 28 C -0.347 4.347 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.202 0.798 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.249 0.751 41 H 0.173 0.827 42 H 0.188 0.812 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.379 8.211 -21.084 23.508 hybrid contribution 1.750 -0.566 -0.273 1.860 sum 8.129 7.645 -21.357 24.096 Atomic orbital electron populations 1.21741 0.93531 1.02296 1.01256 1.22802 0.96304 0.95503 0.85096 0.91939 1.21185 0.88146 0.92101 0.92235 0.90498 1.42341 1.38619 1.13398 1.41644 1.20006 1.13623 1.00581 1.12035 0.91547 1.25733 0.99732 0.94636 1.03770 1.70870 1.40972 1.19085 1.27577 0.83229 0.76285 0.74375 0.75024 1.22295 1.21423 1.22086 1.23169 0.98732 1.01932 0.94695 1.22389 0.94758 0.88942 0.96478 1.48568 1.51362 1.28336 1.04883 1.19982 0.80914 0.85391 0.82929 1.90656 1.40686 1.28077 1.83041 1.21074 1.01415 0.97779 0.81981 1.45547 1.55102 1.31585 1.04393 1.17550 0.79551 0.83438 0.82914 1.90803 1.38496 1.24752 1.87559 1.20252 1.04622 0.97993 0.94388 1.21138 1.00183 1.00781 0.89171 1.25536 1.07072 1.01157 1.03552 1.83111 1.49396 1.26520 0.95596 1.25796 1.03754 1.01370 1.03762 0.90970 0.94190 0.92185 0.79840 0.93354 0.90761 0.89454 0.91013 0.90987 0.88395 0.88259 0.75142 0.82733 0.81205 0.80984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.02 37.15 0.30 -2.32 16 2 C 0.11 1.90 3.44 -66.95 -0.23 1.67 16 3 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.18 3.14 3.52 -66.09 -0.23 2.90 16 5 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 6 N -0.72 -16.07 3.91 -51.65 -0.20 -16.27 16 7 C -0.33 -8.53 8.40 -15.06 -0.13 -8.66 16 8 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 9 C -0.04 -1.12 5.50 -17.43 -0.10 -1.21 16 10 N -0.94 -27.74 13.70 55.49 0.76 -26.98 16 11 Si 1.08 25.06 29.92 -169.99 -5.09 19.97 16 12 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 15 C -0.15 -2.03 6.69 -24.58 -0.16 -2.19 16 16 C 0.10 1.28 6.62 -2.53 -0.02 1.26 16 17 N -0.60 -9.19 3.07 -163.02 -0.50 -9.69 16 18 C 0.52 7.93 7.71 -10.99 -0.08 7.85 16 19 O -0.55 -9.66 14.81 5.56 0.08 -9.58 16 20 C 0.10 1.32 5.16 -5.20 -0.03 1.29 16 21 N -0.71 -8.76 5.50 -62.64 -0.34 -9.11 16 22 C 0.58 7.56 7.79 -12.63 -0.10 7.46 16 23 O -0.54 -8.51 16.80 5.24 0.09 -8.43 16 24 C -0.15 -1.65 5.98 -104.63 -0.63 -2.27 16 25 C -0.08 -0.78 10.10 -39.02 -0.39 -1.17 16 26 C -0.24 -1.68 11.12 28.86 0.32 -1.36 16 27 S 0.19 1.25 23.02 -107.50 -2.48 -1.22 16 28 C -0.21 -1.79 10.38 29.93 0.31 -1.48 16 29 H 0.07 1.55 7.11 -51.93 -0.37 1.18 16 30 H 0.04 0.79 7.08 -51.92 -0.37 0.42 16 31 H 0.06 1.35 7.63 -51.93 -0.40 0.95 16 32 H 0.37 8.61 6.67 -40.82 -0.27 8.34 16 33 H 0.26 7.38 6.78 -40.82 -0.28 7.10 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.07 0.75 7.48 -51.93 -0.39 0.36 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 1.11 7.85 -51.93 -0.41 0.71 16 39 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.41 4.77 5.93 -40.82 -0.24 4.53 16 41 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 42 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.17 1.25 7.01 -52.48 -0.37 0.88 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -32.48 368.73 -8.96 -41.44 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -5.67 Total: 12.55 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.17 Total: 1.77 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -0.29 Total: -62.05 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.17 Total: -18.01 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.09 Total: 19.97 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.48 Total: -1.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.48 -8.96 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180177908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.988 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds