Wall clock time and date at job start Tue Mar 31 2020 20:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 110.00184 * 2 1 4 4 C 1.54330 * 109.88118 * 121.09200 * 2 1 3 5 5 H 1.08999 * 110.87123 * 260.04368 * 4 2 1 6 6 N 1.46496 * 110.71756 * 23.24593 * 4 2 1 7 7 C 1.36939 * 120.00087 * 264.40573 * 6 4 2 8 8 H 1.07996 * 119.99800 * 0.02562 * 7 6 4 9 9 C 1.38811 * 120.00105 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00004 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99985 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47395 * 270.00154 * 11 9 7 13 13 H 1.48498 * 109.47077 * 150.00278 * 11 9 7 14 14 H 1.48505 * 109.46978 * 30.00418 * 11 9 7 15 15 C 1.55161 * 102.94239 * 141.61057 * 4 2 1 16 16 C 1.54907 * 101.58301 * 324.49827 * 15 4 2 17 17 N 1.47026 * 109.88491 * 238.89623 * 2 1 3 18 18 C 1.34775 * 125.64514 * 61.60079 * 17 2 1 19 19 O 1.21281 * 120.00062 * 0.02768 * 18 17 2 20 20 C 1.50696 * 120.00176 * 180.02562 * 18 17 2 21 21 N 1.46496 * 109.47491 * 179.97438 * 20 18 17 22 22 C 1.34772 * 120.00232 * 179.97438 * 21 20 18 23 23 O 1.21644 * 119.99913 * 0.02562 * 22 21 20 24 24 C 1.47190 * 120.00381 * 180.02562 * 22 21 20 25 25 C 1.44423 * 123.46708 * 180.02562 * 24 22 21 26 26 C 1.32768 * 113.09004 * 179.97438 * 25 24 22 27 27 S 1.75505 * 110.57009 * 359.97438 * 26 25 24 28 28 C 1.36008 * 123.45964 * 359.70487 * 24 22 21 29 29 H 1.08996 * 109.47355 * 293.64696 * 1 2 3 30 30 H 1.09008 * 109.47030 * 53.64452 * 1 2 3 31 31 H 1.08997 * 109.47318 * 173.63926 * 1 2 3 32 32 H 0.97001 * 119.99867 * 84.41609 * 6 4 2 33 33 H 0.97008 * 119.99970 * 359.97438 * 10 9 7 34 34 H 1.09003 * 111.00498 * 82.57585 * 15 4 2 35 35 H 1.08997 * 111.00276 * 206.38458 * 15 4 2 36 36 H 1.08994 * 110.36774 * 155.84733 * 16 15 4 37 37 H 1.09007 * 110.36852 * 278.06493 * 16 15 4 38 38 H 1.09003 * 109.47386 * 300.00308 * 20 18 17 39 39 H 1.09002 * 109.47012 * 59.99447 * 20 18 17 40 40 H 0.96998 * 120.00122 * 359.97438 * 21 20 18 41 41 H 1.08009 * 123.45221 * 359.97438 * 25 24 22 42 42 H 1.07991 * 124.71581 * 180.02562 * 26 25 24 43 43 H 1.08008 * 124.59000 * 0.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 2.3524 -0.0481 2.0223 6 7 1.0470 -1.6854 1.7475 7 6 0.2101 -1.3080 2.7636 8 1 0.2927 -0.3204 3.1925 9 6 -0.7444 -2.1950 3.2422 10 7 -0.8447 -3.3989 2.7197 11 14 -1.8866 -1.6800 4.6277 12 1 -1.2694 -2.0272 5.9330 13 1 -3.1838 -2.3893 4.4893 14 1 -2.1145 -0.2140 4.5622 15 6 3.2876 -1.5143 0.6926 16 6 2.8145 -1.8795 -0.7366 17 7 2.0300 -0.7142 -1.1838 18 6 1.8073 -0.3624 -2.4656 19 8 1.1434 0.6207 -2.7181 20 6 2.3832 -1.1905 -3.5853 21 7 2.0010 -0.6046 -4.8725 22 6 2.4064 -1.1802 -6.0217 23 8 3.0893 -2.1864 -5.9902 24 6 2.0229 -0.5913 -7.3150 25 6 2.4147 -1.1453 -8.5899 26 6 1.9551 -0.4499 -9.6233 27 16 1.0139 0.9249 -9.0717 28 6 1.2579 0.5271 -7.4324 29 1 -0.3634 0.4122 0.9413 30 1 -0.3633 0.6092 -0.8277 31 1 -0.3634 -1.0213 -0.1138 32 1 0.9728 -2.5724 1.3621 33 1 -0.2518 -3.6662 2.0000 34 1 4.1654 -0.8689 0.6606 35 1 3.4855 -2.4106 1.2803 36 1 3.6716 -2.0340 -1.3920 37 1 2.1901 -2.7727 -0.7129 38 1 3.4699 -1.2084 -3.5021 39 1 1.9971 -2.2078 -3.5205 40 1 1.4562 0.1975 -4.8976 41 1 3.0196 -2.0343 -8.6921 42 1 2.1346 -0.6964 -10.6592 43 1 0.8605 1.0884 -6.5995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180177908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:34 Heat of formation + Delta-G solvation = -37.484972 kcal Electronic energy + Delta-G solvation = -26445.356578 eV Core-core repulsion = 22616.885671 eV Total energy + Delta-G solvation = -3828.470906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64962 -40.80326 -39.09137 -37.80714 -36.11747 -35.69680 -33.45257 -32.30421 -31.36796 -30.47808 -28.50291 -26.78058 -25.85989 -25.28983 -23.80327 -22.44164 -21.52836 -20.73537 -19.91565 -19.52203 -19.10523 -18.37639 -17.73120 -17.35576 -17.11148 -16.54746 -16.45633 -16.00763 -15.79161 -15.47766 -15.22857 -15.01731 -14.60756 -14.35259 -14.22180 -14.03174 -13.94369 -13.79515 -13.53681 -13.40165 -13.18373 -12.93681 -12.64714 -12.51672 -12.20809 -12.13610 -11.96593 -11.89637 -11.75593 -11.22079 -11.18292 -11.09856 -10.90675 -10.44213 -10.03897 -9.76202 -9.40420 -9.10243 -8.32213 -5.27180 -0.27820 0.58243 0.93265 0.94576 1.37651 1.58309 1.59716 1.68769 1.81884 2.21874 2.23709 2.72165 3.23199 3.44335 3.60980 3.70605 3.78095 3.85737 3.95645 4.10574 4.22141 4.23207 4.28250 4.29495 4.42145 4.43760 4.51562 4.65210 4.73209 4.80607 4.90179 5.01498 5.05610 5.11661 5.15626 5.18383 5.24436 5.36606 5.43555 5.67230 6.29762 6.42716 6.55321 6.90279 6.99965 7.12350 8.02439 8.13141 9.19202 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022008 B = 0.002164 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.977279 B =12934.001356 C =13370.598362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.115 3.885 3 H 0.072 0.928 4 C 0.166 3.834 5 H 0.078 0.922 6 N -0.728 5.728 7 C -0.313 4.313 8 H 0.068 0.932 9 C -0.103 4.103 10 N -0.978 5.978 11 Si 1.121 2.879 12 H -0.286 1.286 13 H -0.300 1.300 14 H -0.275 1.275 15 C -0.131 4.131 16 C 0.097 3.903 17 N -0.599 5.599 18 C 0.521 3.479 19 O -0.573 6.573 20 C 0.112 3.888 21 N -0.710 5.710 22 C 0.579 3.421 23 O -0.574 6.574 24 C -0.184 4.184 25 C -0.108 4.108 26 C -0.231 4.231 27 S 0.245 5.755 28 C -0.214 4.214 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.029 0.971 32 H 0.361 0.639 33 H 0.245 0.755 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.414 0.586 41 H 0.150 0.850 42 H 0.198 0.802 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.502 9.019 -22.791 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.009 3.991 3 H 0.090 0.910 4 C 0.056 3.944 5 H 0.096 0.904 6 N -0.368 5.368 7 C -0.444 4.444 8 H 0.086 0.914 9 C -0.294 4.294 10 N -0.627 5.627 11 Si 0.948 3.052 12 H -0.213 1.213 13 H -0.227 1.227 14 H -0.201 1.201 15 C -0.170 4.170 16 C -0.025 4.025 17 N -0.332 5.332 18 C 0.309 3.691 19 O -0.453 6.453 20 C -0.015 4.015 21 N -0.364 5.364 22 C 0.367 3.633 23 O -0.455 6.455 24 C -0.202 4.202 25 C -0.137 4.137 26 C -0.365 4.365 27 S 0.510 5.490 28 C -0.352 4.352 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.193 0.807 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.252 0.748 41 H 0.167 0.833 42 H 0.215 0.785 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.614 9.744 -22.594 25.756 hybrid contribution 1.380 -0.886 0.069 1.642 sum 8.994 8.858 -22.525 25.821 Atomic orbital electron populations 1.21545 0.95779 0.99959 1.00034 1.22506 0.94265 0.96233 0.86068 0.91007 1.21413 0.88738 0.91982 0.92303 0.90433 1.42442 1.39330 1.13848 1.41187 1.20265 1.12765 1.00000 1.11406 0.91421 1.26884 1.01870 0.94642 1.06042 1.70966 1.42247 1.20597 1.28877 0.82681 0.74264 0.74959 0.73337 1.21277 1.22735 1.20067 1.23094 0.97650 1.01846 0.94416 1.22536 0.95529 0.87549 0.96925 1.48561 1.51481 1.28703 1.04450 1.20390 0.80308 0.85140 0.83217 1.90641 1.41849 1.29387 1.83464 1.21043 1.02275 0.97096 0.81086 1.45555 1.55000 1.31599 1.04248 1.17921 0.78801 0.82923 0.83689 1.90771 1.40286 1.26329 1.88082 1.20207 1.06817 0.99455 0.93730 1.21171 1.01566 1.01546 0.89374 1.25905 1.05647 1.00585 1.04407 1.82971 1.47608 1.25079 0.93308 1.26035 1.02800 1.00665 1.05744 0.92833 0.94405 0.95160 0.80664 0.94441 0.87683 0.89505 0.87160 0.92089 0.86523 0.88037 0.74761 0.83282 0.78482 0.80143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 8.02 71.98 0.58 -4.10 16 2 C 0.12 3.93 3.44 45.34 0.16 4.08 16 3 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.17 5.74 3.52 46.18 0.16 5.90 16 5 H 0.08 2.68 8.06 -2.39 -0.02 2.66 16 6 N -0.73 -32.68 3.91 -317.32 -1.24 -33.92 16 7 C -0.31 -16.17 8.40 84.03 0.71 -15.47 16 8 H 0.07 3.44 7.83 -2.91 -0.02 3.41 16 9 C -0.10 -5.71 5.50 84.86 0.47 -5.25 16 10 N -0.98 -59.22 13.70 21.65 0.30 -58.92 16 11 Si 1.12 50.98 29.92 68.60 2.05 53.03 16 12 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 14 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 15 C -0.13 -3.31 6.69 31.99 0.21 -3.10 16 16 C 0.10 2.33 6.62 86.85 0.58 2.91 16 17 N -0.60 -17.53 3.07 -788.06 -2.42 -19.95 16 18 C 0.52 15.24 7.71 87.66 0.68 15.92 16 19 O -0.57 -19.87 14.81 -3.03 -0.04 -19.92 16 20 C 0.11 2.67 5.16 85.63 0.44 3.12 16 21 N -0.71 -17.01 5.50 -470.34 -2.59 -19.60 16 22 C 0.58 14.99 7.79 86.60 0.67 15.66 16 23 O -0.57 -18.25 16.80 -4.17 -0.07 -18.32 16 24 C -0.18 -3.82 5.98 -19.87 -0.12 -3.94 16 25 C -0.11 -1.93 10.10 22.67 0.23 -1.70 16 26 C -0.23 -2.72 11.12 66.64 0.74 -1.98 16 27 S 0.24 2.61 23.02 -56.49 -1.30 1.31 16 28 C -0.21 -3.36 10.38 67.30 0.70 -2.66 16 29 H 0.05 2.33 7.11 -2.39 -0.02 2.31 16 30 H 0.04 1.52 7.08 -2.38 -0.02 1.50 16 31 H 0.03 1.38 7.63 -2.39 -0.02 1.36 16 32 H 0.36 17.25 6.67 -92.71 -0.62 16.63 16 33 H 0.25 14.68 6.78 -92.70 -0.63 14.05 16 34 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.09 2.26 8.14 -2.39 -0.02 2.25 16 36 H 0.11 1.88 7.48 -2.39 -0.02 1.86 16 37 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.12 2.38 7.85 -2.39 -0.02 2.36 16 39 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.41 9.36 5.93 -92.71 -0.55 8.81 16 41 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.20 1.12 8.06 -2.92 -0.02 1.10 16 43 H 0.18 2.39 7.01 -2.91 -0.02 2.37 16 Total: -1.00 -72.03 368.73 0.92 -71.10 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: 0.03 Total: 35.79 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 6.20 Total: 9.39 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -5.94 Total: -132.39 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.11 Total: -38.24 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.05 Total: 53.03 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.30 Total: 1.31 kcal Total: -72.03 0.92 -71.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180177908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.620 kcal (2) G-P(sol) polarization free energy of solvation -72.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds