Wall clock time and date at job start Tue Mar 31 2020 20:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.26869 * 2 1 4 4 C 1.53989 * 110.31192 * 237.91404 * 2 1 3 5 5 N 1.47900 * 107.05923 * 242.20856 * 4 2 1 6 6 C 1.46896 * 111.00040 * 214.15602 * 5 4 2 7 7 C 1.50700 * 109.46942 * 169.99708 * 6 5 4 8 8 O 1.21293 * 120.00282 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00075 * 179.97438 * 7 6 5 10 10 C 1.37104 * 120.00173 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99666 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00001 * 180.27893 * 10 9 7 13 13 N 1.31407 * 120.00135 * 179.72366 * 12 10 9 14 14 Si 1.86800 * 120.00194 * 359.72088 * 12 10 9 15 15 H 1.48500 * 109.47210 * 89.99937 * 14 12 10 16 16 H 1.48496 * 109.47530 * 210.00374 * 14 12 10 17 17 H 1.48501 * 109.47312 * 330.00618 * 14 12 10 18 18 C 1.48541 * 105.81760 * 334.66922 * 5 4 2 19 19 C 1.54594 * 110.39270 * 122.14421 * 2 1 3 20 20 H 1.08995 * 110.72602 * 22.55944 * 19 2 1 21 21 N 1.46506 * 110.72430 * 259.45615 * 19 2 1 22 22 C 1.34770 * 119.99737 * 154.99891 * 21 19 2 23 23 O 1.21694 * 120.00434 * 0.02562 * 22 21 19 24 24 C 1.46583 * 119.99850 * 180.02562 * 22 21 19 25 25 C 1.36647 * 125.45960 * 179.72310 * 24 22 21 26 26 C 1.37481 * 113.29781 * 179.83825 * 25 24 22 27 27 C 1.33812 * 115.09691 * 0.45238 * 26 25 24 28 28 S 1.70616 * 110.95789 * 359.74730 * 27 26 25 29 29 H 1.09000 * 109.47096 * 180.63217 * 1 2 3 30 30 H 1.08997 * 109.47901 * 300.63539 * 1 2 3 31 31 H 1.09002 * 109.47490 * 60.63745 * 1 2 3 32 32 H 1.09001 * 109.91878 * 122.85582 * 4 2 1 33 33 H 1.08999 * 109.91571 * 1.55940 * 4 2 1 34 34 H 1.08994 * 109.47346 * 50.00014 * 6 5 4 35 35 H 1.08998 * 109.47279 * 289.99686 * 6 5 4 36 36 H 0.97000 * 120.00140 * 0.02562 * 9 7 6 37 37 H 0.97004 * 120.00486 * 179.97438 * 13 12 10 38 38 H 1.08995 * 110.66700 * 157.64545 * 18 5 4 39 39 H 1.08998 * 110.66599 * 280.77270 * 18 5 4 40 40 H 0.97003 * 119.99755 * 334.99758 * 21 19 2 41 41 H 1.07993 * 123.35236 * 0.02562 * 25 24 22 42 42 H 1.07997 * 122.44739 * 180.22377 * 26 25 24 43 43 H 1.08003 * 124.52089 * 179.77229 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0645 -0.7671 -1.2235 5 7 2.8334 -1.9215 -0.7100 6 6 3.9769 -2.2221 -1.5817 7 6 4.8701 -3.2318 -0.9081 8 8 4.5827 -3.6585 0.1903 9 7 5.9884 -3.6606 -1.5261 10 6 6.8008 -4.5796 -0.9135 11 1 6.5449 -4.9595 0.0645 12 6 7.9568 -5.0173 -1.5483 13 7 8.7382 -5.8940 -0.9588 14 14 8.3999 -4.3596 -3.2396 15 1 9.2384 -3.1428 -3.0934 16 1 9.1553 -5.3941 -3.9907 17 1 7.1581 -4.0189 -3.9792 18 6 3.2882 -1.5324 0.6495 19 6 2.0687 -0.7710 1.2269 20 1 1.3207 -1.4690 1.6027 21 7 2.4843 0.1576 2.2812 22 6 2.5015 -0.2465 3.5667 23 8 2.1722 -1.3828 3.8519 24 6 2.9168 0.6827 4.6216 25 6 2.9706 0.3941 5.9561 26 6 3.3993 1.4508 6.7241 27 6 3.6779 2.5697 6.0451 28 16 3.4185 2.3495 4.3732 29 1 -0.3633 -1.0276 0.0113 30 1 -0.3635 0.5236 0.8842 31 1 -0.3634 0.5039 -0.8956 32 1 2.7148 -0.1202 -1.8124 33 1 1.2327 -1.1173 -1.8347 34 1 4.5398 -1.3082 -1.7709 35 1 3.6165 -2.6290 -2.5264 36 1 6.2185 -3.3191 -2.4044 37 1 9.5451 -6.1999 -1.4021 38 1 3.5091 -2.4157 1.2487 39 1 4.1580 -0.8782 0.5916 40 1 2.7472 1.0632 2.0538 41 1 2.7059 -0.5691 6.3665 42 1 3.5000 1.3839 7.7973 43 1 4.0216 3.4893 6.4952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205801680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:04 Heat of formation + Delta-G solvation = -47.351104 kcal Electronic energy + Delta-G solvation = -26496.431346 eV Core-core repulsion = 22667.532612 eV Total energy + Delta-G solvation = -3828.898734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43847 -40.54768 -39.36364 -38.34200 -36.17381 -35.58123 -33.84875 -33.66552 -31.23668 -30.00163 -28.64389 -26.79163 -26.17641 -25.01140 -23.03297 -22.03203 -21.57656 -21.33235 -20.23986 -20.20689 -19.51341 -17.81728 -17.73185 -16.94546 -16.78415 -16.51355 -16.47663 -16.19772 -15.73914 -15.51368 -15.02425 -14.80810 -14.69277 -14.56554 -14.39962 -14.02973 -13.93663 -13.76494 -13.67388 -13.30034 -13.16180 -13.02580 -12.87892 -12.53510 -12.43550 -12.22600 -12.00936 -11.99380 -11.86916 -11.71232 -11.50027 -11.28572 -10.43202 -10.29423 -10.16329 -9.86513 -9.54114 -9.34585 -8.43071 -6.04661 -0.54192 0.44797 0.88595 1.28739 1.34234 1.37271 1.43854 1.90487 1.92327 2.10243 2.21831 2.68941 3.12602 3.22468 3.48264 3.63072 3.77440 3.92264 4.11160 4.12032 4.17670 4.31969 4.33863 4.37233 4.50129 4.51910 4.55492 4.69674 4.82220 4.95727 5.00091 5.05555 5.06943 5.17587 5.21305 5.29954 5.32528 5.43549 5.51085 5.82439 5.90866 6.07306 6.32837 6.57353 6.86562 7.02995 7.36479 7.95406 8.74935 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.002868 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.015104 B = 9759.714749 C =11155.626478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.109 0.891 4 C 0.038 3.962 5 N -0.516 5.516 6 C 0.046 3.954 7 C 0.444 3.556 8 O -0.608 6.608 9 N -0.589 5.589 10 C -0.330 4.330 11 H 0.050 0.950 12 C -0.016 4.016 13 N -0.936 5.936 14 Si 0.968 3.032 15 H -0.255 1.255 16 H -0.274 1.274 17 H -0.229 1.229 18 C 0.035 3.965 19 C 0.148 3.852 20 H 0.078 0.922 21 N -0.703 5.703 22 C 0.583 3.417 23 O -0.576 6.576 24 C -0.306 4.306 25 C -0.065 4.065 26 C -0.161 4.161 27 C -0.216 4.216 28 S 0.249 5.751 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.390 0.610 37 H 0.280 0.720 38 H 0.060 0.940 39 H 0.036 0.964 40 H 0.411 0.589 41 H 0.140 0.860 42 H 0.169 0.831 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.807 27.498 2.114 30.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.127 0.873 4 C -0.089 4.089 5 N -0.241 5.241 6 C -0.085 4.085 7 C 0.232 3.768 8 O -0.493 6.493 9 N -0.230 5.230 10 C -0.459 4.459 11 H 0.068 0.932 12 C -0.215 4.215 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.180 1.180 16 H -0.200 1.200 17 H -0.152 1.152 18 C -0.094 4.094 19 C 0.042 3.958 20 H 0.097 0.903 21 N -0.354 5.354 22 C 0.371 3.629 23 O -0.457 6.457 24 C -0.426 4.426 25 C -0.100 4.100 26 C -0.191 4.191 27 C -0.354 4.354 28 S 0.516 5.484 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.144 0.856 36 H 0.226 0.774 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.248 0.752 41 H 0.157 0.843 42 H 0.186 0.814 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -14.224 26.771 1.757 30.366 hybrid contribution 1.401 -0.757 0.933 1.845 sum -12.823 26.014 2.690 29.127 Atomic orbital electron populations 1.21800 0.92385 1.02149 1.03061 1.22270 0.98009 0.99685 0.91526 0.87331 1.23197 0.98689 0.90218 0.96774 1.64482 1.20430 1.37742 1.01481 1.22134 0.91336 0.97593 0.97414 1.20992 0.82752 0.86127 0.86964 1.90547 1.74058 1.61420 1.23240 1.41995 1.22081 1.39967 1.19007 1.18976 1.03920 1.19815 1.03164 0.93180 1.26171 0.94856 0.96356 1.04097 1.69815 1.14644 1.32045 1.41123 0.85326 0.80314 0.79024 0.76592 1.17976 1.19953 1.15213 1.23511 0.95837 0.98631 0.91432 1.21940 0.95402 0.91132 0.87350 0.90338 1.45666 1.68306 1.16179 1.05293 1.17459 0.76602 0.86114 0.82714 1.90843 1.50347 1.21330 1.83224 1.24580 1.18885 1.01365 0.97797 1.21038 0.96553 1.01038 0.91339 1.20225 1.04161 0.91721 1.03029 1.25819 1.06278 1.04729 0.98533 1.82627 1.59005 1.01573 1.05194 0.93304 0.92377 0.89626 0.90837 0.88188 0.89633 0.85629 0.77378 0.91094 0.92155 0.94531 0.75157 0.84267 0.81406 0.77860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.89 71.98 0.64 -1.39 16 2 C -0.10 -1.69 3.32 -9.92 -0.03 -1.73 16 3 H 0.11 1.30 7.75 -2.38 -0.02 1.28 16 4 C 0.04 0.75 6.36 86.44 0.55 1.30 16 5 N -0.52 -16.33 5.26 -887.60 -4.67 -21.00 16 6 C 0.05 1.47 5.52 85.56 0.47 1.94 16 7 C 0.44 20.92 7.49 87.66 0.66 21.58 16 8 O -0.61 -35.58 13.09 -3.07 -0.04 -35.62 16 9 N -0.59 -28.57 5.09 -306.98 -1.56 -30.13 16 10 C -0.33 -19.92 10.16 84.04 0.85 -19.07 16 11 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 12 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 13 N -0.94 -57.74 13.96 21.66 0.30 -57.44 16 14 Si 0.97 39.19 27.73 68.60 1.90 41.09 16 15 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 16 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 18 C 0.04 1.27 4.99 86.65 0.43 1.70 16 19 C 0.15 4.13 2.97 46.19 0.14 4.27 16 20 H 0.08 2.69 7.27 -2.39 -0.02 2.67 16 21 N -0.70 -17.47 5.18 -440.90 -2.28 -19.75 16 22 C 0.58 18.17 7.78 86.42 0.67 18.85 16 23 O -0.58 -24.03 16.48 -4.33 -0.07 -24.10 16 24 C -0.31 -7.38 6.45 24.08 0.16 -7.23 16 25 C -0.07 -1.48 10.01 21.72 0.22 -1.26 16 26 C -0.16 -2.48 10.15 21.08 0.21 -2.27 16 27 C -0.22 -2.53 10.92 66.81 0.73 -1.80 16 28 S 0.25 3.45 22.16 -56.49 -1.25 2.20 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.09 7.57 -2.39 -0.02 1.07 16 33 H 0.10 1.69 7.68 -2.39 -0.02 1.67 16 34 H 0.09 2.14 7.81 -2.39 -0.02 2.12 16 35 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.39 15.46 5.77 -92.71 -0.53 14.93 16 37 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 38 H 0.06 3.00 5.97 -2.39 -0.01 2.98 16 39 H 0.04 1.29 8.02 -2.39 -0.02 1.27 16 40 H 0.41 7.07 7.50 -92.71 -0.70 6.37 16 41 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 42 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.20 0.94 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -90.29 367.97 -1.74 -92.03 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: -0.23 Total: 38.30 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 6.17 Total: 14.42 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -8.21 Total: -128.32 kcal Atomic # 8 Polarization: -59.62 SS G_CDS: -0.11 Total: -59.73 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.90 Total: 41.09 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.25 Total: 2.20 kcal Total: -90.29 -1.74 -92.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205801680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.680 kcal (2) G-P(sol) polarization free energy of solvation -90.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds