Wall clock time and date at job start Tue Mar 31 2020 20:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.34549 * 2 1 4 4 C 1.53989 * 110.31138 * 237.86300 * 2 1 3 5 5 N 1.47900 * 107.05923 * 242.30488 * 4 2 1 6 6 C 1.46896 * 111.00040 * 214.15602 * 5 4 2 7 7 C 1.50700 * 109.46942 * 169.99708 * 6 5 4 8 8 O 1.21293 * 120.00282 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00075 * 179.97438 * 7 6 5 10 10 C 1.37104 * 120.00173 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99666 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00001 * 180.27893 * 10 9 7 13 13 N 1.31414 * 119.99893 * 359.72318 * 12 10 9 14 14 Si 1.86801 * 119.99957 * 179.72309 * 12 10 9 15 15 H 1.48496 * 109.47031 * 59.99793 * 14 12 10 16 16 H 1.48504 * 109.46970 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47038 * 299.99770 * 14 12 10 18 18 C 1.48541 * 105.81760 * 334.66922 * 5 4 2 19 19 C 1.54594 * 110.31157 * 122.14134 * 2 1 3 20 20 H 1.08995 * 110.72602 * 22.51707 * 19 2 1 21 21 N 1.46506 * 110.72430 * 259.41379 * 19 2 1 22 22 C 1.34770 * 119.99737 * 154.99891 * 21 19 2 23 23 O 1.21637 * 120.00204 * 0.02562 * 22 21 19 24 24 C 1.47196 * 119.99560 * 179.97438 * 22 21 19 25 25 C 1.44429 * 123.45860 * 179.73062 * 24 22 21 26 26 C 1.32766 * 113.08197 * 179.80670 * 25 24 22 27 27 S 1.75504 * 110.57726 * 0.44229 * 26 25 24 28 28 C 1.35999 * 123.46455 * 0.02562 * 24 22 21 29 29 H 1.09007 * 109.46675 * 180.68369 * 1 2 3 30 30 H 1.08997 * 109.47333 * 300.68465 * 1 2 3 31 31 H 1.09002 * 109.47517 * 60.69012 * 1 2 3 32 32 H 1.09001 * 109.91878 * 122.95214 * 4 2 1 33 33 H 1.08999 * 109.91571 * 1.65573 * 4 2 1 34 34 H 1.08994 * 109.47346 * 50.00014 * 6 5 4 35 35 H 1.08998 * 109.47279 * 289.99686 * 6 5 4 36 36 H 0.97000 * 120.00140 * 0.02562 * 9 7 6 37 37 H 0.97004 * 119.99542 * 180.02562 * 13 12 10 38 38 H 1.08995 * 110.66700 * 157.64545 * 18 5 4 39 39 H 1.08998 * 110.66599 * 280.77270 * 18 5 4 40 40 H 0.97003 * 119.99755 * 334.99758 * 21 19 2 41 41 H 1.08004 * 123.45682 * 0.02562 * 25 24 22 42 42 H 1.08006 * 124.71061 * 180.17865 * 26 25 24 43 43 H 1.08002 * 124.58987 * 0.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0221 0.0000 4 6 2.0645 -0.7682 -1.2229 5 7 2.8314 -1.9234 -0.7083 6 6 3.9752 -2.2259 -1.5790 7 6 4.8666 -3.2365 -0.9043 8 8 4.5777 -3.6626 0.1940 9 7 5.9848 -3.6671 -1.5213 10 6 6.7955 -4.5869 -0.9078 11 1 6.5382 -4.9662 0.0702 12 6 7.9513 -5.0264 -1.5414 13 7 8.2646 -4.5644 -2.7311 14 14 9.0599 -6.2739 -0.7021 15 1 8.2957 -7.5208 -0.4445 16 1 10.2185 -6.5764 -1.5804 17 1 9.5464 -5.7165 0.5854 18 6 3.2856 -1.5346 0.6515 19 6 2.0666 -0.7713 1.2276 20 1 1.3174 -1.4682 1.6030 21 7 2.4827 0.1570 2.2819 22 6 2.4982 -0.2467 3.5676 23 8 2.1673 -1.3820 3.8527 24 6 2.9168 0.6858 4.6268 25 6 2.9561 0.3346 6.0271 26 6 3.3685 1.3305 6.8022 27 16 3.7169 2.7568 5.8407 28 6 3.3007 1.9685 4.3879 29 1 -0.3633 -1.0277 0.0123 30 1 -0.3634 0.5244 0.8837 31 1 -0.3634 0.5031 -0.8961 32 1 2.7162 -0.1224 -1.8114 33 1 1.2327 -1.1175 -1.8346 34 1 4.5395 -1.3127 -1.7679 35 1 3.6151 -2.6326 -2.5239 36 1 6.2161 -3.3261 -2.3995 37 1 9.0714 -4.8715 -3.1736 38 1 3.5049 -2.4180 1.2511 39 1 4.1564 -0.8815 0.5941 40 1 2.7470 1.0622 2.0545 41 1 2.6818 -0.6395 6.4046 42 1 3.4709 1.2725 7.8758 43 1 3.3362 2.4259 3.4102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205922367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:17 Heat of formation + Delta-G solvation = -27.105736 kcal Electronic energy + Delta-G solvation = -26484.343506 eV Core-core repulsion = 22656.322677 eV Total energy + Delta-G solvation = -3828.020829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.28835 -39.08085 -37.71801 -36.82306 -34.53629 -33.86829 -32.58670 -31.24624 -30.32667 -28.64741 -27.23026 -25.49472 -24.98972 -23.81737 -21.90208 -20.85460 -20.56533 -19.28421 -19.13689 -18.28126 -17.85292 -17.19682 -16.35219 -16.00007 -15.11044 -15.06299 -14.84830 -14.48333 -14.26834 -14.09238 -13.85532 -13.54272 -13.42020 -13.30159 -13.18781 -12.99696 -12.72947 -12.68330 -12.30409 -11.86529 -11.70200 -11.52853 -11.41953 -11.27794 -11.23864 -11.03058 -10.81413 -10.60059 -10.39886 -10.19773 -9.92977 -9.47524 -9.35683 -9.05351 -8.69443 -8.35641 -8.00067 -7.87742 -6.40628 -3.81261 0.49473 1.24423 1.61326 1.81985 3.03815 3.21702 3.26999 3.30569 3.32089 3.90864 4.10180 4.32773 4.41473 4.51466 4.73287 4.77858 4.82550 4.97341 5.08701 5.10762 5.26131 5.35471 5.40816 5.50313 5.53751 5.54245 5.71847 5.80565 5.83865 5.86196 5.93552 5.96841 6.00912 6.14697 6.17538 6.27575 6.45708 6.75736 7.20717 7.29921 7.43750 7.56833 8.07321 8.19737 8.63075 9.19444 9.54792 10.07068 10.77060 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.002831 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.524084 B = 9887.261545 C =11769.177941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 H 0.075 0.925 4 C 0.038 3.962 5 N -0.493 5.493 6 C 0.038 3.962 7 C 0.440 3.560 8 O -0.576 6.576 9 N -0.562 5.562 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.031 3.969 19 C 0.141 3.859 20 H 0.107 0.893 21 N -0.716 5.716 22 C 0.575 3.425 23 O -0.525 6.525 24 C -0.147 4.147 25 C -0.084 4.084 26 C -0.236 4.236 27 S 0.178 5.822 28 C -0.214 4.214 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.124 0.876 39 H 0.037 0.963 40 H 0.395 0.605 41 H 0.156 0.844 42 H 0.170 0.830 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 19.239 9.741 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 H 0.094 0.906 4 C -0.091 4.091 5 N -0.217 5.217 6 C -0.094 4.094 7 C 0.226 3.774 8 O -0.461 6.461 9 N -0.199 5.199 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.097 4.097 19 C 0.036 3.964 20 H 0.125 0.875 21 N -0.367 5.367 22 C 0.360 3.640 23 O -0.401 6.401 24 C -0.166 4.166 25 C -0.113 4.113 26 C -0.370 4.370 27 S 0.444 5.556 28 C -0.353 4.353 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.142 0.858 39 H 0.055 0.945 40 H 0.229 0.771 41 H 0.173 0.827 42 H 0.187 0.813 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.918 19.039 10.916 24.973 hybrid contribution 1.082 -0.573 -1.000 1.580 sum -10.836 18.466 9.917 23.595 Atomic orbital electron populations 1.21816 0.93809 1.02645 1.01453 1.22250 0.96935 0.98905 0.94697 0.90631 1.23032 0.98487 0.91494 0.96085 1.64566 1.20736 1.34315 1.02087 1.22111 0.91716 0.98376 0.97214 1.19728 0.83471 0.86563 0.87673 1.90473 1.73690 1.60790 1.21128 1.41838 1.20257 1.38654 1.19105 1.19666 1.02024 1.17863 1.03263 0.87931 1.25255 0.97925 0.98789 0.95923 1.69608 1.26616 1.44323 1.13865 0.85921 0.79011 0.80552 0.78776 1.19822 1.20982 1.19917 1.23845 0.94112 1.00856 0.90871 1.22152 0.97658 0.90768 0.85816 0.87532 1.45804 1.68878 1.15829 1.06199 1.17588 0.77634 0.86752 0.81982 1.90842 1.47445 1.19327 1.82497 1.20396 1.07623 0.93837 0.94735 1.21198 0.99147 1.00540 0.90419 1.25516 1.10250 0.97126 1.04148 1.83033 1.63347 1.14371 0.94897 1.25647 1.06140 0.98701 1.04769 0.91702 0.92755 0.92434 0.93732 0.89934 0.93400 0.89031 0.77488 0.91838 0.85804 0.94485 0.77085 0.82666 0.81261 0.81399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.89 37.16 0.33 -0.97 16 2 C -0.11 -1.16 3.32 -89.27 -0.30 -1.46 16 3 H 0.08 0.67 7.75 -51.93 -0.40 0.27 16 4 C 0.04 0.47 6.36 -2.76 -0.02 0.45 16 5 N -0.49 -8.45 5.26 -231.90 -1.22 -9.67 16 6 C 0.04 0.69 5.52 -4.98 -0.03 0.66 16 7 C 0.44 10.59 7.49 -10.98 -0.08 10.51 16 8 O -0.58 -15.82 13.09 5.55 0.07 -15.75 16 9 N -0.56 -14.46 5.29 -10.96 -0.06 -14.51 16 10 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 11 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 13 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 14 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.03 0.56 4.99 -1.90 -0.01 0.55 16 19 C 0.14 1.97 2.97 -66.07 -0.20 1.78 16 20 H 0.11 1.72 7.26 -51.93 -0.38 1.34 16 21 N -0.72 -8.68 5.15 -53.15 -0.27 -8.95 16 22 C 0.58 8.32 7.79 -12.63 -0.10 8.22 16 23 O -0.52 -9.84 16.44 5.24 0.09 -9.75 16 24 C -0.15 -1.71 5.98 -104.63 -0.63 -2.34 16 25 C -0.08 -0.91 10.10 -39.02 -0.39 -1.30 16 26 C -0.24 -1.92 11.12 28.86 0.32 -1.60 16 27 S 0.18 1.26 23.02 -107.50 -2.48 -1.22 16 28 C -0.21 -1.83 10.38 29.93 0.31 -1.52 16 29 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.51 7.57 -51.93 -0.39 0.12 16 33 H 0.08 0.95 7.68 -51.93 -0.40 0.55 16 34 H 0.05 0.79 7.81 -51.93 -0.41 0.39 16 35 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 37 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.12 2.83 5.97 -51.93 -0.31 2.52 16 39 H 0.04 0.67 8.02 -51.93 -0.42 0.25 16 40 H 0.39 3.48 6.89 -40.82 -0.28 3.20 16 41 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 42 H 0.17 0.96 8.06 -52.48 -0.42 0.53 16 43 H 0.17 1.00 7.01 -52.49 -0.37 0.63 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -34.20 370.27 -9.34 -43.53 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -5.72 Total: 13.50 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -1.03 Total: 4.91 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.83 Total: -57.20 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.16 Total: -25.50 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.48 Total: -1.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.20 -9.34 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205922367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.425 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds