Wall clock time and date at job start Tue Mar 31 2020 20:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.34549 * 2 1 4 4 C 1.53989 * 110.31138 * 237.86300 * 2 1 3 5 5 N 1.47900 * 107.05923 * 242.30488 * 4 2 1 6 6 C 1.46896 * 111.00040 * 214.15602 * 5 4 2 7 7 C 1.50700 * 109.46942 * 169.99708 * 6 5 4 8 8 O 1.21293 * 120.00282 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00075 * 179.97438 * 7 6 5 10 10 C 1.37104 * 120.00173 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99666 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00001 * 180.27893 * 10 9 7 13 13 N 1.31414 * 119.99893 * 359.72318 * 12 10 9 14 14 Si 1.86801 * 119.99957 * 179.72309 * 12 10 9 15 15 H 1.48496 * 109.47031 * 59.99793 * 14 12 10 16 16 H 1.48504 * 109.46970 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47038 * 299.99770 * 14 12 10 18 18 C 1.48541 * 105.81760 * 334.66922 * 5 4 2 19 19 C 1.54594 * 110.31157 * 122.14134 * 2 1 3 20 20 H 1.08995 * 110.72602 * 22.51707 * 19 2 1 21 21 N 1.46506 * 110.72430 * 259.41379 * 19 2 1 22 22 C 1.34770 * 119.99737 * 154.99891 * 21 19 2 23 23 O 1.21637 * 120.00204 * 0.02562 * 22 21 19 24 24 C 1.47196 * 119.99560 * 179.97438 * 22 21 19 25 25 C 1.44429 * 123.45860 * 179.73062 * 24 22 21 26 26 C 1.32766 * 113.08197 * 179.80670 * 25 24 22 27 27 S 1.75504 * 110.57726 * 0.44229 * 26 25 24 28 28 C 1.35999 * 123.46455 * 0.02562 * 24 22 21 29 29 H 1.09007 * 109.46675 * 180.68369 * 1 2 3 30 30 H 1.08997 * 109.47333 * 300.68465 * 1 2 3 31 31 H 1.09002 * 109.47517 * 60.69012 * 1 2 3 32 32 H 1.09001 * 109.91878 * 122.95214 * 4 2 1 33 33 H 1.08999 * 109.91571 * 1.65573 * 4 2 1 34 34 H 1.08994 * 109.47346 * 50.00014 * 6 5 4 35 35 H 1.08998 * 109.47279 * 289.99686 * 6 5 4 36 36 H 0.97000 * 120.00140 * 0.02562 * 9 7 6 37 37 H 0.97004 * 119.99542 * 180.02562 * 13 12 10 38 38 H 1.08995 * 110.66700 * 157.64545 * 18 5 4 39 39 H 1.08998 * 110.66599 * 280.77270 * 18 5 4 40 40 H 0.97003 * 119.99755 * 334.99758 * 21 19 2 41 41 H 1.08004 * 123.45682 * 0.02562 * 25 24 22 42 42 H 1.08006 * 124.71061 * 180.17865 * 26 25 24 43 43 H 1.08002 * 124.58987 * 0.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0221 0.0000 4 6 2.0645 -0.7682 -1.2229 5 7 2.8314 -1.9234 -0.7083 6 6 3.9752 -2.2259 -1.5790 7 6 4.8666 -3.2365 -0.9043 8 8 4.5777 -3.6626 0.1940 9 7 5.9848 -3.6671 -1.5213 10 6 6.7955 -4.5869 -0.9078 11 1 6.5382 -4.9662 0.0702 12 6 7.9513 -5.0264 -1.5414 13 7 8.2646 -4.5644 -2.7311 14 14 9.0599 -6.2739 -0.7021 15 1 8.2957 -7.5208 -0.4445 16 1 10.2185 -6.5764 -1.5804 17 1 9.5464 -5.7165 0.5854 18 6 3.2856 -1.5346 0.6515 19 6 2.0666 -0.7713 1.2276 20 1 1.3174 -1.4682 1.6030 21 7 2.4827 0.1570 2.2819 22 6 2.4982 -0.2467 3.5676 23 8 2.1673 -1.3820 3.8527 24 6 2.9168 0.6858 4.6268 25 6 2.9561 0.3346 6.0271 26 6 3.3685 1.3305 6.8022 27 16 3.7169 2.7568 5.8407 28 6 3.3007 1.9685 4.3879 29 1 -0.3633 -1.0277 0.0123 30 1 -0.3634 0.5244 0.8837 31 1 -0.3634 0.5031 -0.8961 32 1 2.7162 -0.1224 -1.8114 33 1 1.2327 -1.1175 -1.8346 34 1 4.5395 -1.3127 -1.7679 35 1 3.6151 -2.6326 -2.5239 36 1 6.2161 -3.3261 -2.3995 37 1 9.0714 -4.8715 -3.1736 38 1 3.5049 -2.4180 1.2511 39 1 4.1564 -0.8815 0.5941 40 1 2.7470 1.0622 2.0545 41 1 2.6818 -0.6395 6.4046 42 1 3.4709 1.2725 7.8758 43 1 3.3362 2.4259 3.4102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205922367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:16 Heat of formation + Delta-G solvation = -54.112907 kcal Electronic energy + Delta-G solvation = -26485.514625 eV Core-core repulsion = 22656.322677 eV Total energy + Delta-G solvation = -3829.191948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44387 -40.50268 -39.26920 -37.73592 -36.13962 -35.54267 -33.71887 -33.29628 -31.17128 -29.88961 -28.54592 -26.82562 -26.20855 -25.11942 -23.03556 -22.00884 -21.56239 -21.08592 -20.10969 -19.89511 -19.02985 -18.17534 -17.72162 -17.41839 -16.65173 -16.39927 -16.27253 -15.92600 -15.71453 -15.60640 -15.02071 -14.81737 -14.54679 -14.32895 -14.19125 -13.96124 -13.82880 -13.64135 -13.53609 -13.38588 -13.15747 -12.99978 -12.86580 -12.51168 -12.46490 -12.24815 -12.16035 -12.07997 -11.86100 -11.69615 -11.50137 -11.04912 -10.34407 -10.13352 -10.03952 -9.97956 -9.37203 -9.32570 -8.49676 -5.98312 -0.24104 0.61329 0.92510 0.96418 1.36550 1.38443 1.49481 2.01005 2.01702 2.26579 2.29374 2.88398 3.16845 3.32698 3.53389 3.65846 3.82078 3.91719 3.95872 4.17669 4.26097 4.28870 4.34342 4.42698 4.44850 4.52477 4.55666 4.69495 4.80436 4.85288 4.95830 5.05863 5.06958 5.12599 5.19638 5.25901 5.33339 5.37922 5.45701 5.81643 5.93610 6.10714 6.46231 6.58175 7.10298 7.16428 7.52190 8.09773 8.67557 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.002831 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.524084 B = 9887.261545 C =11769.177941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.109 0.891 4 C 0.037 3.963 5 N -0.514 5.514 6 C 0.050 3.950 7 C 0.434 3.566 8 O -0.617 6.617 9 N -0.571 5.571 10 C -0.335 4.335 11 H 0.074 0.926 12 C -0.010 4.010 13 N -0.918 5.918 14 Si 0.991 3.009 15 H -0.273 1.273 16 H -0.266 1.266 17 H -0.273 1.273 18 C 0.038 3.962 19 C 0.149 3.851 20 H 0.077 0.923 21 N -0.700 5.700 22 C 0.569 3.431 23 O -0.585 6.585 24 C -0.185 4.185 25 C -0.117 4.117 26 C -0.233 4.233 27 S 0.253 5.747 28 C -0.205 4.205 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.397 0.603 37 H 0.279 0.721 38 H 0.062 0.938 39 H 0.033 0.967 40 H 0.414 0.586 41 H 0.137 0.863 42 H 0.194 0.806 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.714 22.866 8.859 27.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.127 0.873 4 C -0.091 4.091 5 N -0.239 5.239 6 C -0.081 4.081 7 C 0.222 3.778 8 O -0.504 6.504 9 N -0.208 5.208 10 C -0.465 4.465 11 H 0.092 0.908 12 C -0.210 4.210 13 N -0.559 5.559 14 Si 0.814 3.186 15 H -0.199 1.199 16 H -0.190 1.190 17 H -0.199 1.199 18 C -0.091 4.091 19 C 0.043 3.957 20 H 0.095 0.905 21 N -0.352 5.352 22 C 0.357 3.643 23 O -0.466 6.466 24 C -0.204 4.204 25 C -0.146 4.146 26 C -0.368 4.368 27 S 0.518 5.482 28 C -0.344 4.344 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.231 0.769 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.252 0.748 41 H 0.154 0.846 42 H 0.211 0.789 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -11.789 22.732 9.993 27.488 hybrid contribution 1.043 -1.603 -0.662 2.024 sum -10.746 21.129 9.331 25.475 Atomic orbital electron populations 1.21794 0.92418 1.02094 1.03017 1.22248 0.97943 0.99635 0.91489 0.87282 1.23194 0.98573 0.90315 0.96984 1.64483 1.20376 1.37461 1.01630 1.22018 0.91379 0.97482 0.97240 1.20859 0.83243 0.86590 0.87152 1.90491 1.74523 1.62239 1.23111 1.41892 1.20810 1.38766 1.19341 1.19587 1.03841 1.19965 1.03062 0.90758 1.25999 0.98470 1.00059 0.96468 1.69659 1.27094 1.44759 1.14399 0.85029 0.77509 0.78028 0.78015 1.19867 1.19043 1.19863 1.23496 0.95778 0.98643 0.91217 1.21879 0.95223 0.91192 0.87405 0.90507 1.45627 1.68054 1.16323 1.05201 1.18173 0.76540 0.86489 0.83114 1.90802 1.50368 1.22005 1.83452 1.20201 1.11223 0.94832 0.94127 1.21186 1.01538 1.00957 0.90916 1.25859 1.08328 0.97164 1.05473 1.82844 1.60752 1.11957 0.92619 1.26053 1.03556 0.97522 1.07261 0.93385 0.92190 0.89832 0.91423 0.88462 0.90806 0.86737 0.76897 0.91182 0.91950 0.94915 0.74775 0.84553 0.78898 0.78596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.89 71.98 0.64 -1.53 16 2 C -0.09 -1.78 3.32 -9.92 -0.03 -1.81 16 3 H 0.11 1.40 7.75 -2.38 -0.02 1.38 16 4 C 0.04 0.81 6.36 86.44 0.55 1.36 16 5 N -0.51 -17.56 5.26 -887.60 -4.67 -22.23 16 6 C 0.05 1.80 5.52 85.56 0.47 2.27 16 7 C 0.43 21.65 7.49 87.66 0.66 22.31 16 8 O -0.62 -36.20 13.09 -3.07 -0.04 -36.24 16 9 N -0.57 -30.26 5.29 -306.98 -1.62 -31.89 16 10 C -0.33 -19.70 9.68 84.04 0.81 -18.88 16 11 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 12 C -0.01 -0.55 5.50 84.92 0.47 -0.08 16 13 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 14 Si 0.99 44.22 29.55 68.60 2.03 46.24 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 16 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 C 0.04 1.42 4.99 86.65 0.43 1.85 16 19 C 0.15 4.26 2.97 46.19 0.14 4.40 16 20 H 0.08 2.68 7.26 -2.39 -0.02 2.66 16 21 N -0.70 -17.04 5.15 -440.31 -2.27 -19.31 16 22 C 0.57 17.53 7.79 86.60 0.67 18.21 16 23 O -0.59 -24.36 16.44 -4.15 -0.07 -24.43 16 24 C -0.19 -4.37 5.98 -19.87 -0.12 -4.49 16 25 C -0.12 -2.65 10.10 22.67 0.23 -2.42 16 26 C -0.23 -3.49 11.12 66.64 0.74 -2.75 16 27 S 0.25 2.76 23.02 -56.49 -1.30 1.46 16 28 C -0.21 -3.04 10.38 67.30 0.70 -2.34 16 29 H 0.05 0.94 8.13 -2.38 -0.02 0.92 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.24 7.57 -2.39 -0.02 1.22 16 33 H 0.10 1.91 7.68 -2.39 -0.02 1.89 16 34 H 0.07 2.28 7.81 -2.39 -0.02 2.26 16 35 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 36 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 37 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 38 H 0.06 3.14 5.97 -2.39 -0.01 3.12 16 39 H 0.03 1.21 8.02 -2.39 -0.02 1.19 16 40 H 0.41 6.47 6.89 -92.71 -0.64 5.83 16 41 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 42 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 43 H 0.20 1.58 7.01 -2.91 -0.02 1.56 16 Total: -1.00 -82.04 370.27 -1.61 -83.65 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -0.31 Total: 36.62 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 6.36 Total: 16.09 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -8.28 Total: -123.39 kcal Atomic # 8 Polarization: -60.57 SS G_CDS: -0.11 Total: -60.68 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.30 Total: 1.46 kcal Total: -82.04 -1.61 -83.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205922367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.542 kcal (2) G-P(sol) polarization free energy of solvation -82.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds