Wall clock time and date at job start Tue Mar 31 2020 20:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.77970 * 2 1 4 4 C 1.54326 * 110.72261 * 236.76112 * 2 1 3 5 5 N 1.47020 * 107.26938 * 219.44371 * 4 2 1 6 6 C 1.36933 * 125.64967 * 178.98775 * 5 4 2 7 7 H 1.07999 * 119.99979 * 349.93951 * 6 5 4 8 8 C 1.38814 * 120.00475 * 169.94104 * 6 5 4 9 9 N 1.31622 * 119.99902 * 350.42101 * 8 6 5 10 10 Si 1.86801 * 120.00229 * 170.41671 * 8 6 5 11 11 H 1.48494 * 109.47175 * 94.13819 * 10 8 6 12 12 H 1.48496 * 109.47165 * 214.14328 * 10 8 6 13 13 H 1.48505 * 109.46984 * 334.13874 * 10 8 6 14 14 C 1.47430 * 108.70731 * 358.93770 * 5 4 2 15 15 C 1.54909 * 104.82712 * 24.12669 * 14 5 4 16 16 H 1.09005 * 111.03419 * 81.08628 * 15 14 5 17 17 N 1.46503 * 111.00431 * 204.91586 * 15 14 5 18 18 C 1.34781 * 120.00143 * 266.92854 * 17 15 14 19 19 O 1.21283 * 119.99933 * 0.26698 * 18 17 15 20 20 C 1.50694 * 119.99928 * 180.27506 * 18 17 15 21 21 N 1.46502 * 109.47187 * 179.97438 * 20 18 17 22 22 C 1.34779 * 120.00420 * 179.97438 * 21 20 18 23 23 O 1.21642 * 119.99625 * 359.97438 * 22 21 20 24 24 C 1.47180 * 120.00011 * 180.02562 * 22 21 20 25 25 C 1.44432 * 123.45989 * 179.72815 * 24 22 21 26 26 C 1.32766 * 113.08225 * 179.80199 * 25 24 22 27 27 S 1.75501 * 110.58029 * 0.44480 * 26 25 24 28 28 C 1.36008 * 123.46714 * 0.02562 * 24 22 21 29 29 H 1.09000 * 109.47645 * 296.76019 * 1 2 3 30 30 H 1.09000 * 109.47440 * 56.76432 * 1 2 3 31 31 H 1.08999 * 109.46886 * 176.76246 * 1 2 3 32 32 H 1.09000 * 109.87923 * 338.85777 * 4 2 1 33 33 H 1.08994 * 109.88103 * 100.02484 * 4 2 1 34 34 H 0.96999 * 119.99752 * 180.02562 * 9 8 6 35 35 H 1.09003 * 110.36715 * 265.29740 * 14 5 4 36 36 H 1.08997 * 110.36802 * 142.96737 * 14 5 4 37 37 H 0.96995 * 119.99857 * 87.19812 * 17 15 14 38 38 H 1.09001 * 109.47356 * 299.99414 * 20 18 17 39 39 H 1.09007 * 109.47283 * 59.99941 * 20 18 17 40 40 H 0.97005 * 119.99730 * 0.02562 * 21 20 18 41 41 H 1.07999 * 123.45770 * 0.02562 * 25 24 22 42 42 H 1.08005 * 124.70838 * 180.17963 * 26 25 24 43 43 H 1.08001 * 124.58461 * 359.94533 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 3.2445 -1.5507 -0.7389 6 6 4.0045 -2.3967 -1.5016 7 1 3.6726 -2.6775 -2.4903 8 6 5.2014 -2.8935 -1.0042 9 7 5.7004 -2.4106 0.1140 10 14 6.1041 -4.2474 -1.9217 11 1 7.1178 -3.6435 -2.8232 12 1 6.7785 -5.1414 -0.9466 13 1 5.1331 -5.0335 -2.7246 14 6 3.4633 -1.2497 0.6876 15 6 2.0790 -0.7953 1.2138 16 1 1.4448 -1.6531 1.4380 17 7 2.2214 0.0698 2.3875 18 6 2.1817 -0.4619 3.6254 19 8 2.0330 -1.6571 3.7675 20 6 2.3220 0.4288 4.8328 21 7 2.2457 -0.3829 6.0500 22 6 2.3479 0.2040 7.2590 23 8 2.5039 1.4077 7.3394 24 6 2.2718 -0.6116 8.4817 25 6 2.3777 -0.0623 9.8133 26 6 2.2768 -0.9821 10.7654 27 16 2.0583 -2.5756 10.0631 28 6 2.1003 -1.9609 8.4739 29 1 -0.3634 0.4627 0.9176 30 1 -0.3634 0.5632 -0.8595 31 1 -0.3633 -1.0260 -0.0580 32 1 1.3130 -1.4759 -1.5775 33 1 2.3741 -0.1024 -1.9977 34 1 6.5370 -2.7574 0.4613 35 1 4.1931 -0.4476 0.7985 36 1 3.7960 -2.1425 1.2170 37 1 2.3403 1.0257 2.2738 38 1 3.2836 0.9408 4.7969 39 1 1.5182 1.1651 4.8366 40 1 2.1224 -1.3429 5.9858 41 1 2.5205 0.9892 10.0140 42 1 2.3268 -0.7786 11.8249 43 1 2.0032 -2.5613 7.5814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211114259.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:17 Heat of formation + Delta-G solvation = -13.991542 kcal Electronic energy + Delta-G solvation = -26124.209152 eV Core-core repulsion = 22296.756997 eV Total energy + Delta-G solvation = -3827.452155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32919 -39.42133 -37.69525 -36.98718 -34.60153 -34.02748 -32.73075 -30.55652 -30.43082 -28.68016 -27.02132 -25.68764 -24.98261 -23.55127 -21.67252 -20.80381 -20.22497 -19.87716 -19.36587 -18.47795 -17.45075 -16.96599 -16.32256 -16.25938 -15.87919 -15.43714 -14.88813 -14.76493 -14.56523 -13.87927 -13.72328 -13.34072 -13.27171 -13.20829 -13.02419 -12.92893 -12.71509 -12.64185 -12.51351 -12.22736 -11.70499 -11.43557 -11.38847 -11.04720 -10.83572 -10.71843 -10.45706 -10.16036 -10.00853 -9.96812 -9.82691 -9.72343 -9.42556 -9.30112 -8.74510 -8.66058 -8.56588 -6.84137 -5.76521 -3.10254 0.46747 1.22259 1.60176 1.73289 2.69459 2.77393 3.17431 3.38834 3.44657 3.47005 3.49528 4.44878 4.47940 4.66276 4.80539 4.93950 5.05131 5.07697 5.21627 5.25303 5.29887 5.37600 5.49337 5.49611 5.69484 5.76495 5.89011 5.94492 5.96509 6.07142 6.11497 6.16394 6.32159 6.38990 6.63652 6.66752 6.88130 7.32343 7.35979 7.54486 7.69463 7.76807 8.02101 8.22019 8.33089 9.15827 9.78321 10.43928 11.36012 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.002395 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.307767 B =11688.204882 C =13026.149171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.602 5.602 6 C -0.232 4.232 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.170 3.830 15 C 0.117 3.883 16 H 0.094 0.906 17 N -0.705 5.705 18 C 0.508 3.492 19 O -0.538 6.538 20 C 0.101 3.899 21 N -0.710 5.710 22 C 0.581 3.419 23 O -0.540 6.540 24 C -0.155 4.155 25 C -0.084 4.084 26 C -0.240 4.240 27 S 0.189 5.811 28 C -0.207 4.207 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.028 0.972 33 H 0.025 0.975 34 H 0.253 0.747 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.399 0.601 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.411 0.589 41 H 0.155 0.845 42 H 0.170 0.830 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 5.208 18.069 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.328 5.328 6 C -0.360 4.360 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.562 5.562 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.044 3.956 15 C 0.011 3.989 16 H 0.112 0.888 17 N -0.355 5.355 18 C 0.293 3.707 19 O -0.415 6.415 20 C -0.027 4.027 21 N -0.365 5.365 22 C 0.366 3.634 23 O -0.418 6.418 24 C -0.173 4.173 25 C -0.113 4.113 26 C -0.374 4.374 27 S 0.454 5.546 28 C -0.345 4.345 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.233 0.767 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.250 0.750 41 H 0.172 0.828 42 H 0.187 0.813 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -10.364 3.629 18.816 21.786 hybrid contribution 0.834 0.817 -1.335 1.773 sum -9.530 4.446 17.482 20.401 Atomic orbital electron populations 1.21740 0.94875 1.01900 1.00977 1.22422 0.95268 0.99289 0.96023 0.90599 1.21358 0.90383 0.93102 0.93712 1.44355 1.31226 1.50769 1.06489 1.19002 0.99681 1.18971 0.98394 0.90472 1.24845 0.96899 1.00504 0.98030 1.69948 1.20587 1.43605 1.22077 0.86121 0.79549 0.81612 0.78566 1.21589 1.21580 1.20545 1.21676 0.89358 0.99896 0.84672 1.22737 1.01092 0.92577 0.82447 0.88791 1.45764 1.72934 1.11373 1.05423 1.20333 0.76814 0.88857 0.84707 1.90705 1.49500 1.15403 1.85911 1.21093 1.04857 0.93656 0.83044 1.45539 1.74133 1.12502 1.04364 1.17533 0.76367 0.87046 0.82427 1.90794 1.49629 1.14262 1.87148 1.20248 1.10211 0.92468 0.94415 1.21131 0.99612 1.01170 0.89359 1.25533 1.11877 0.96190 1.03845 1.83126 1.67965 1.08696 0.94830 1.25816 1.05684 0.98665 1.04372 0.93103 0.92754 0.92485 0.95433 0.95722 0.93670 0.95321 0.90871 0.76683 0.88044 0.88323 0.75017 0.82780 0.81264 0.80890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.16 37.15 0.34 -1.43 16 2 C -0.11 -1.75 3.19 -88.79 -0.28 -2.04 16 3 H 0.08 1.10 8.00 -51.93 -0.42 0.68 16 4 C 0.14 2.82 6.84 -3.06 -0.02 2.80 16 5 N -0.60 -15.23 3.39 -170.07 -0.58 -15.80 16 6 C -0.23 -6.47 10.24 -15.06 -0.15 -6.63 16 7 H 0.08 2.08 7.85 -52.49 -0.41 1.66 16 8 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 9 N -0.92 -27.06 10.68 55.49 0.59 -26.47 16 10 Si 0.91 22.17 29.56 -169.99 -5.03 17.15 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.17 4.07 5.12 -2.53 -0.01 4.05 16 15 C 0.12 2.11 2.87 -65.78 -0.19 1.92 16 16 H 0.09 1.87 7.44 -51.93 -0.39 1.48 16 17 N -0.71 -10.14 5.20 -51.73 -0.27 -10.41 16 18 C 0.51 7.55 7.90 -10.99 -0.09 7.46 16 19 O -0.54 -9.95 15.31 5.55 0.09 -9.86 16 20 C 0.10 1.20 6.15 -5.20 -0.03 1.17 16 21 N -0.71 -8.79 5.50 -62.64 -0.34 -9.13 16 22 C 0.58 7.62 7.79 -12.63 -0.10 7.52 16 23 O -0.54 -8.49 16.80 5.24 0.09 -8.40 16 24 C -0.16 -1.71 5.98 -104.63 -0.63 -2.33 16 25 C -0.08 -0.80 10.10 -39.02 -0.39 -1.20 16 26 C -0.24 -1.77 11.12 28.86 0.32 -1.45 16 27 S 0.19 1.35 23.02 -107.50 -2.48 -1.13 16 28 C -0.21 -1.88 10.38 29.93 0.31 -1.57 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 32 H 0.03 0.54 7.76 -51.93 -0.40 0.14 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 36 H 0.07 2.05 6.93 -51.93 -0.36 1.69 16 37 H 0.40 4.47 8.57 -40.82 -0.35 4.12 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 40 H 0.41 4.95 5.93 -40.82 -0.24 4.71 16 41 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.17 0.81 8.06 -52.48 -0.42 0.38 16 43 H 0.17 1.38 7.01 -52.49 -0.37 1.01 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -34.52 373.80 -9.18 -43.70 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.87 Total: 6.71 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -1.02 Total: 8.02 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.60 Total: -61.82 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.17 Total: -18.27 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.48 Total: -1.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.52 -9.18 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211114259.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.708 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds