Wall clock time and date at job start Tue Mar 31 2020 20:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.77970 * 2 1 4 4 C 1.54326 * 110.72261 * 236.76112 * 2 1 3 5 5 N 1.47020 * 107.26938 * 219.44371 * 4 2 1 6 6 C 1.36933 * 125.64967 * 178.98775 * 5 4 2 7 7 H 1.07999 * 119.99979 * 349.93951 * 6 5 4 8 8 C 1.38814 * 120.00475 * 169.94104 * 6 5 4 9 9 N 1.31622 * 119.99902 * 350.42101 * 8 6 5 10 10 Si 1.86801 * 120.00229 * 170.41671 * 8 6 5 11 11 H 1.48494 * 109.47175 * 94.13819 * 10 8 6 12 12 H 1.48496 * 109.47165 * 214.14328 * 10 8 6 13 13 H 1.48505 * 109.46984 * 334.13874 * 10 8 6 14 14 C 1.47430 * 108.70731 * 358.93770 * 5 4 2 15 15 C 1.54909 * 104.82712 * 24.12669 * 14 5 4 16 16 H 1.09005 * 111.03419 * 81.08628 * 15 14 5 17 17 N 1.46503 * 111.00431 * 204.91586 * 15 14 5 18 18 C 1.34781 * 120.00143 * 266.92854 * 17 15 14 19 19 O 1.21283 * 119.99933 * 0.26698 * 18 17 15 20 20 C 1.50694 * 119.99928 * 180.27506 * 18 17 15 21 21 N 1.46502 * 109.47187 * 179.97438 * 20 18 17 22 22 C 1.34779 * 120.00420 * 179.97438 * 21 20 18 23 23 O 1.21642 * 119.99625 * 359.97438 * 22 21 20 24 24 C 1.47180 * 120.00011 * 180.02562 * 22 21 20 25 25 C 1.44432 * 123.45989 * 179.72815 * 24 22 21 26 26 C 1.32766 * 113.08225 * 179.80199 * 25 24 22 27 27 S 1.75501 * 110.58029 * 0.44480 * 26 25 24 28 28 C 1.36008 * 123.46714 * 0.02562 * 24 22 21 29 29 H 1.09000 * 109.47645 * 296.76019 * 1 2 3 30 30 H 1.09000 * 109.47440 * 56.76432 * 1 2 3 31 31 H 1.08999 * 109.46886 * 176.76246 * 1 2 3 32 32 H 1.09000 * 109.87923 * 338.85777 * 4 2 1 33 33 H 1.08994 * 109.88103 * 100.02484 * 4 2 1 34 34 H 0.96999 * 119.99752 * 180.02562 * 9 8 6 35 35 H 1.09003 * 110.36715 * 265.29740 * 14 5 4 36 36 H 1.08997 * 110.36802 * 142.96737 * 14 5 4 37 37 H 0.96995 * 119.99857 * 87.19812 * 17 15 14 38 38 H 1.09001 * 109.47356 * 299.99414 * 20 18 17 39 39 H 1.09007 * 109.47283 * 59.99941 * 20 18 17 40 40 H 0.97005 * 119.99730 * 0.02562 * 21 20 18 41 41 H 1.07999 * 123.45770 * 0.02562 * 25 24 22 42 42 H 1.08005 * 124.70838 * 180.17963 * 26 25 24 43 43 H 1.08001 * 124.58461 * 359.94533 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 3.2445 -1.5507 -0.7389 6 6 4.0045 -2.3967 -1.5016 7 1 3.6726 -2.6775 -2.4903 8 6 5.2014 -2.8935 -1.0042 9 7 5.7004 -2.4106 0.1140 10 14 6.1041 -4.2474 -1.9217 11 1 7.1178 -3.6435 -2.8232 12 1 6.7785 -5.1414 -0.9466 13 1 5.1331 -5.0335 -2.7246 14 6 3.4633 -1.2497 0.6876 15 6 2.0790 -0.7953 1.2138 16 1 1.4448 -1.6531 1.4380 17 7 2.2214 0.0698 2.3875 18 6 2.1817 -0.4619 3.6254 19 8 2.0330 -1.6571 3.7675 20 6 2.3220 0.4288 4.8328 21 7 2.2457 -0.3829 6.0500 22 6 2.3479 0.2040 7.2590 23 8 2.5039 1.4077 7.3394 24 6 2.2718 -0.6116 8.4817 25 6 2.3777 -0.0623 9.8133 26 6 2.2768 -0.9821 10.7654 27 16 2.0583 -2.5756 10.0631 28 6 2.1003 -1.9609 8.4739 29 1 -0.3634 0.4627 0.9176 30 1 -0.3634 0.5632 -0.8595 31 1 -0.3633 -1.0260 -0.0580 32 1 1.3130 -1.4759 -1.5775 33 1 2.3741 -0.1024 -1.9977 34 1 6.5370 -2.7574 0.4613 35 1 4.1931 -0.4476 0.7985 36 1 3.7960 -2.1425 1.2170 37 1 2.3403 1.0257 2.2738 38 1 3.2836 0.9408 4.7969 39 1 1.5182 1.1651 4.8366 40 1 2.1224 -1.3429 5.9858 41 1 2.5205 0.9892 10.0140 42 1 2.3268 -0.7786 11.8249 43 1 2.0032 -2.5613 7.5814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211114259.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:16 Heat of formation + Delta-G solvation = -39.295129 kcal Electronic energy + Delta-G solvation = -26125.306398 eV Core-core repulsion = 22296.756997 eV Total energy + Delta-G solvation = -3828.549401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44926 -40.61161 -39.20346 -37.78103 -35.80036 -35.52910 -34.35828 -32.21059 -31.36048 -29.99928 -28.38621 -27.33950 -25.86780 -25.11668 -22.74461 -22.16098 -21.68857 -21.18391 -20.37527 -19.24883 -18.90045 -18.32529 -17.63732 -17.44522 -16.98086 -16.74770 -16.56332 -15.79436 -15.74309 -15.64256 -14.86830 -14.46649 -14.43216 -14.32245 -14.18274 -14.08291 -13.91870 -13.85836 -13.44555 -13.37969 -13.28288 -13.04649 -12.86914 -12.65591 -12.23208 -12.11053 -12.07706 -11.87267 -11.69718 -11.47271 -11.15330 -11.07522 -10.72603 -10.38838 -10.05630 -10.00360 -9.38412 -8.89323 -7.90927 -5.26439 -0.25162 0.60315 0.95686 0.97758 1.42873 1.45268 1.47163 1.54848 1.71115 2.26530 2.36027 2.48675 3.28975 3.48463 3.64580 3.79256 3.84934 3.93343 4.01884 4.07035 4.29474 4.30489 4.32781 4.45164 4.50892 4.59927 4.64769 4.83008 4.90063 5.04327 5.07899 5.11320 5.13621 5.20054 5.27506 5.28954 5.41643 5.48619 5.54949 5.71747 6.16376 6.34331 6.46905 7.02973 7.03391 7.14426 7.73048 8.37736 9.20033 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.002395 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.307767 B =11688.204882 C =13026.149171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 H 0.098 0.902 4 C 0.132 3.868 5 N -0.626 5.626 6 C -0.245 4.245 7 H 0.083 0.917 8 C -0.066 4.066 9 N -0.947 5.947 10 Si 0.977 3.023 11 H -0.283 1.283 12 H -0.296 1.296 13 H -0.267 1.267 14 C 0.180 3.820 15 C 0.136 3.864 16 H 0.077 0.923 17 N -0.694 5.694 18 C 0.510 3.490 19 O -0.576 6.576 20 C 0.109 3.891 21 N -0.711 5.711 22 C 0.580 3.420 23 O -0.573 6.573 24 C -0.183 4.183 25 C -0.107 4.107 26 C -0.230 4.230 27 S 0.240 5.760 28 C -0.215 4.215 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.246 0.754 35 H 0.004 0.996 36 H 0.020 0.980 37 H 0.418 0.582 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.413 0.587 41 H 0.151 0.849 42 H 0.199 0.801 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.952 5.675 18.707 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.116 0.884 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.374 4.374 7 H 0.101 0.899 8 C -0.259 4.259 9 N -0.595 5.595 10 Si 0.805 3.195 11 H -0.210 1.210 12 H -0.222 1.222 13 H -0.192 1.192 14 C 0.054 3.946 15 C 0.030 3.970 16 H 0.095 0.905 17 N -0.345 5.345 18 C 0.296 3.704 19 O -0.456 6.456 20 C -0.018 4.018 21 N -0.365 5.365 22 C 0.367 3.633 23 O -0.454 6.454 24 C -0.201 4.201 25 C -0.136 4.136 26 C -0.365 4.365 27 S 0.506 5.494 28 C -0.354 4.354 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.039 0.961 37 H 0.256 0.744 38 H 0.127 0.873 39 H 0.142 0.858 40 H 0.251 0.749 41 H 0.169 0.831 42 H 0.216 0.784 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -11.957 4.130 19.435 23.189 hybrid contribution 1.301 0.603 -1.507 2.081 sum -10.656 4.733 17.928 21.386 Atomic orbital electron populations 1.21691 0.91824 1.02060 1.03095 1.22371 0.97527 0.99095 0.92223 0.88378 1.21621 0.88719 0.93260 0.95701 1.44667 1.32215 1.51263 1.07123 1.19418 0.99942 1.19183 0.98815 0.89946 1.25703 0.98127 1.02957 0.99135 1.70165 1.20678 1.44949 1.23728 0.85091 0.78377 0.78761 0.77271 1.21011 1.22240 1.19189 1.21378 0.92174 0.96777 0.84294 1.22197 0.97003 0.93315 0.84507 0.90521 1.45556 1.72595 1.11977 1.04356 1.20836 0.75512 0.88606 0.85411 1.90693 1.51111 1.17327 1.86485 1.21114 1.06216 0.93126 0.81378 1.45586 1.73881 1.12613 1.04450 1.17869 0.75520 0.86866 0.83030 1.90762 1.51453 1.15573 1.87608 1.20240 1.12674 0.93078 0.94131 1.21177 1.01410 1.01654 0.89316 1.25904 1.09713 0.95965 1.04939 1.82987 1.66061 1.07688 0.92705 1.26028 1.04881 0.98298 1.06188 0.91082 0.90504 0.93380 0.94845 0.95245 0.94485 0.97826 0.96117 0.74410 0.87289 0.85788 0.74892 0.83100 0.78446 0.80360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.16 71.98 0.66 -2.23 16 2 C -0.09 -2.75 3.19 -9.61 -0.03 -2.78 16 3 H 0.10 2.52 8.00 -2.39 -0.02 2.50 16 4 C 0.13 5.17 6.84 86.73 0.59 5.77 16 5 N -0.63 -32.32 3.39 -691.99 -2.35 -34.67 16 6 C -0.24 -13.89 10.24 84.03 0.86 -13.03 16 7 H 0.08 4.46 7.85 -2.91 -0.02 4.44 16 8 C -0.07 -3.82 5.40 84.86 0.46 -3.36 16 9 N -0.95 -58.36 10.68 21.65 0.23 -58.13 16 10 Si 0.98 46.55 29.56 68.60 2.03 48.58 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 C 0.18 8.96 5.12 86.85 0.44 9.40 16 15 C 0.14 4.91 2.87 46.38 0.13 5.05 16 16 H 0.08 3.09 7.44 -2.38 -0.02 3.07 16 17 N -0.69 -19.36 5.20 -435.96 -2.27 -21.62 16 18 C 0.51 15.02 7.90 87.65 0.69 15.71 16 19 O -0.58 -21.78 15.31 -3.04 -0.05 -21.83 16 20 C 0.11 2.50 6.15 85.63 0.53 3.02 16 21 N -0.71 -17.57 5.50 -470.32 -2.59 -20.15 16 22 C 0.58 15.32 7.79 86.59 0.67 15.99 16 23 O -0.57 -18.17 16.80 -4.16 -0.07 -18.24 16 24 C -0.18 -3.99 5.98 -19.87 -0.12 -4.11 16 25 C -0.11 -1.99 10.10 22.67 0.23 -1.76 16 26 C -0.23 -2.94 11.12 66.64 0.74 -2.20 16 27 S 0.24 2.93 23.02 -56.49 -1.30 1.63 16 28 C -0.22 -3.76 10.38 67.30 0.70 -3.06 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.18 8.06 -2.39 -0.02 1.16 16 32 H 0.03 1.28 7.76 -2.39 -0.02 1.26 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.00 0.20 8.07 -2.39 -0.02 0.18 16 36 H 0.02 1.22 6.93 -2.39 -0.02 1.20 16 37 H 0.42 8.52 8.57 -92.71 -0.79 7.72 16 38 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.41 10.07 5.93 -92.70 -0.55 9.52 16 41 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 42 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.18 2.78 7.01 -2.91 -0.02 2.76 16 Total: -1.00 -78.91 373.80 -0.09 -78.99 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -0.29 Total: 23.04 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 6.56 Total: 22.40 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -6.97 Total: -134.58 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.12 Total: -40.07 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.30 Total: 1.63 kcal Total: -78.91 -0.09 -78.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211114259.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.700 kcal (2) G-P(sol) polarization free energy of solvation -78.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds