Wall clock time and date at job start Tue Mar 31 2020 20:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 110.38694 * 2 1 4 4 C 1.54385 * 110.34298 * 237.77390 * 2 1 3 5 5 N 1.48143 * 104.61764 * 217.26086 * 4 2 1 6 6 C 1.34781 * 127.83702 * 219.60421 * 5 4 2 7 7 O 1.21634 * 119.99906 * 173.63969 * 6 5 4 8 8 C 1.47190 * 120.00132 * 353.64183 * 6 5 4 9 9 C 1.44427 * 123.45741 * 345.40865 * 8 6 5 10 10 C 1.32771 * 113.08057 * 180.02562 * 9 8 6 11 11 S 1.75498 * 110.57799 * 359.97438 * 10 9 8 12 12 C 1.36009 * 123.46274 * 165.11462 * 8 6 5 13 13 C 1.48148 * 104.32607 * 39.58110 * 5 4 2 14 14 C 1.54283 * 110.34673 * 122.23394 * 2 1 3 15 15 H 1.08993 * 110.34175 * 359.97438 * 14 2 1 16 16 N 1.46903 * 110.34089 * 237.74203 * 14 2 1 17 17 C 1.46906 * 110.99904 * 155.00021 * 16 14 2 18 18 C 1.50692 * 109.46991 * 180.02562 * 17 16 14 19 19 O 1.21297 * 120.00479 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99706 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99672 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00348 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99352 * 179.97438 * 21 20 18 24 24 N 1.31403 * 120.00567 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99362 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47364 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47139 * 120.00178 * 25 23 21 28 28 H 1.48501 * 109.46556 * 239.99885 * 25 23 21 29 29 H 1.09005 * 109.47089 * 297.76417 * 1 2 3 30 30 H 1.08997 * 109.47737 * 57.76523 * 1 2 3 31 31 H 1.09004 * 109.47052 * 177.77144 * 1 2 3 32 32 H 1.09005 * 110.40771 * 336.04242 * 4 2 1 33 33 H 1.08997 * 110.40927 * 98.47316 * 4 2 1 34 34 H 1.08001 * 123.46058 * 0.02562 * 9 8 6 35 35 H 1.08008 * 124.71071 * 180.02562 * 10 9 8 36 36 H 1.07997 * 124.58601 * 359.97438 * 12 8 6 37 37 H 1.08998 * 110.40921 * 201.62700 * 13 5 4 38 38 H 1.09000 * 110.40344 * 79.20018 * 13 5 4 39 39 H 1.00899 * 110.99853 * 278.94662 * 16 14 2 40 40 H 1.09007 * 109.46616 * 299.99990 * 17 16 14 41 41 H 1.09001 * 109.46848 * 59.99635 * 17 16 14 42 42 H 0.97002 * 120.00376 * 359.97438 * 20 18 17 43 43 H 0.96996 * 120.00179 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0666 -0.7719 -1.2246 5 7 3.2663 -1.4816 -0.7228 6 6 4.4425 -1.6659 -1.3546 7 8 5.3771 -2.1731 -0.7641 8 6 4.5960 -1.2534 -2.7592 9 6 3.4824 -0.9322 -3.6210 10 6 3.8560 -0.5862 -4.8472 11 16 5.6038 -0.6395 -4.9975 12 6 5.8013 -1.1300 -3.3772 13 6 2.8802 -1.9421 0.6313 14 6 2.0664 -0.7716 1.2236 15 1 1.2399 -1.1502 1.8249 16 7 2.9332 0.0947 2.0337 17 6 2.9733 -0.3588 3.4304 18 6 3.8697 0.5523 4.2288 19 8 4.4213 1.4872 3.6875 20 7 4.0592 0.3277 5.5441 21 6 4.8751 1.1563 6.2704 22 1 5.3656 1.9892 5.7886 23 6 5.0701 0.9250 7.6266 24 7 4.4729 -0.0880 8.2130 25 14 6.1812 2.0545 8.6163 26 1 6.7301 3.1110 7.7288 27 1 5.3992 2.6836 9.7107 28 1 7.2982 1.2661 9.1960 29 1 -0.3633 0.4787 0.9094 30 1 -0.3634 0.5481 -0.8692 31 1 -0.3633 -1.0269 -0.0400 32 1 1.3234 -1.4860 -1.5794 33 1 2.3399 -0.0793 -2.0206 34 1 2.4516 -0.9696 -3.3009 35 1 3.1785 -0.3095 -5.6415 36 1 6.7542 -1.3194 -2.9056 37 1 3.7673 -2.1325 1.2354 38 1 2.2640 -2.8389 0.5663 39 1 3.8621 0.1439 1.6427 40 1 1.9670 -0.3358 3.8488 41 1 3.3605 -1.3769 3.4708 42 1 3.6184 -0.4201 5.9770 43 1 4.6088 -0.2492 9.1597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214102343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:24 Heat of formation + Delta-G solvation = -19.928219 kcal Electronic energy + Delta-G solvation = -26385.022769 eV Core-core repulsion = 22557.313180 eV Total energy + Delta-G solvation = -3827.709589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54044 -38.64363 -37.88089 -36.98197 -34.57787 -33.72981 -32.62971 -31.18755 -30.12433 -29.19443 -26.66571 -26.56768 -24.86341 -23.96074 -22.70852 -20.89092 -20.28058 -19.38519 -19.14823 -18.22834 -17.84547 -16.53072 -16.34118 -16.04478 -15.91244 -15.14059 -14.82541 -14.56709 -14.46992 -14.12473 -13.99722 -13.62493 -13.45172 -13.22298 -13.11543 -12.88472 -12.82611 -12.63530 -12.37849 -12.08370 -12.00959 -11.59269 -11.53328 -11.45957 -11.12089 -11.05773 -10.94976 -10.74445 -10.31878 -10.19600 -10.08011 -9.49288 -9.39570 -9.03488 -8.77111 -8.41220 -8.01590 -7.92710 -6.39023 -3.79525 0.51484 1.20230 1.55066 1.68850 2.81397 3.14486 3.18681 3.28976 3.36647 3.93830 4.07208 4.24735 4.30515 4.38486 4.46740 4.71186 4.84425 4.94481 5.05474 5.12667 5.17044 5.18583 5.21165 5.28809 5.33865 5.43568 5.52443 5.54695 5.62642 5.68943 5.78783 5.85153 5.89636 5.99608 6.01239 6.05504 6.18633 6.33296 7.23089 7.37623 7.58292 7.63171 8.02037 8.09504 8.64273 9.20985 9.57298 10.08878 10.78894 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.002353 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.980813 B =11897.975032 C =12908.846972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.097 0.903 4 C 0.091 3.909 5 N -0.614 5.614 6 C 0.598 3.402 7 O -0.536 6.536 8 C -0.158 4.158 9 C -0.121 4.121 10 C -0.235 4.235 11 S 0.184 5.816 12 C -0.179 4.179 13 C 0.073 3.927 14 C 0.078 3.922 15 H 0.096 0.904 16 N -0.657 5.657 17 C 0.048 3.952 18 C 0.441 3.559 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.161 0.839 35 H 0.169 0.831 36 H 0.176 0.824 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.353 0.647 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.392 0.608 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.434 -5.153 -26.084 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.116 0.884 4 C -0.032 4.032 5 N -0.348 5.348 6 C 0.387 3.613 7 O -0.414 6.414 8 C -0.175 4.175 9 C -0.150 4.150 10 C -0.370 4.370 11 S 0.449 5.551 12 C -0.317 4.317 13 C -0.051 4.051 14 C -0.034 4.034 15 H 0.114 0.886 16 N -0.288 5.288 17 C -0.084 4.084 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.178 0.822 35 H 0.187 0.813 36 H 0.193 0.807 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.173 0.827 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.225 0.775 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.917 -4.095 -27.046 28.216 hybrid contribution -0.222 -1.123 2.064 2.360 sum -7.139 -5.218 -24.983 26.502 Atomic orbital electron populations 1.21783 0.93715 1.01726 1.02502 1.22207 0.96035 1.00996 0.92680 0.88437 1.23001 0.86639 0.95715 0.97858 1.48655 1.12873 1.55717 1.17514 1.17201 0.80819 0.78333 0.84982 1.90835 1.38350 1.44945 1.67248 1.20190 0.92737 1.09371 0.95201 1.21758 1.00066 1.00606 0.92574 1.25544 0.98877 1.10831 1.01706 1.83114 1.01819 1.63396 1.06781 1.25618 1.02619 1.03708 0.99779 1.23224 1.00164 0.98021 0.83690 1.22684 0.96029 0.90508 0.94228 0.88587 1.60236 1.17476 1.50175 1.00943 1.21743 1.00671 0.96624 0.89407 1.19793 0.86317 0.88005 0.83202 1.90531 1.52781 1.32960 1.70380 1.41866 1.42867 1.28408 1.06964 1.19753 1.22741 1.09395 0.90807 0.87904 1.25260 0.98328 0.97392 0.97023 1.69615 1.43656 1.28951 1.12154 0.85804 0.79414 0.79812 0.79347 1.19221 1.20749 1.20776 0.91641 0.92409 0.92647 0.90777 0.89066 0.82194 0.81316 0.80657 0.89625 0.90719 0.82656 0.89449 0.93778 0.77469 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.92 37.15 0.33 -0.69 16 2 C -0.10 -0.95 3.45 -89.23 -0.31 -1.26 16 3 H 0.10 1.13 7.95 -51.93 -0.41 0.72 16 4 C 0.09 0.76 4.83 -2.41 -0.01 0.75 16 5 N -0.61 -7.35 3.32 -170.66 -0.57 -7.91 16 6 C 0.60 8.58 7.83 -12.62 -0.10 8.48 16 7 O -0.54 -9.83 17.05 5.25 0.09 -9.74 16 8 C -0.16 -1.80 5.88 -104.63 -0.62 -2.42 16 9 C -0.12 -1.00 8.56 -39.02 -0.33 -1.33 16 10 C -0.23 -1.58 11.12 28.86 0.32 -1.26 16 11 S 0.18 1.32 23.02 -107.50 -2.48 -1.15 16 12 C -0.18 -1.86 10.55 29.93 0.32 -1.54 16 13 C 0.07 0.88 6.51 -2.41 -0.02 0.86 16 14 C 0.08 0.91 3.03 -66.31 -0.20 0.71 16 15 H 0.10 1.00 7.39 -51.93 -0.38 0.61 16 16 N -0.66 -10.72 5.80 -106.51 -0.62 -11.34 16 17 C 0.05 0.86 6.02 -4.98 -0.03 0.83 16 18 C 0.44 10.69 7.82 -10.99 -0.09 10.61 16 19 O -0.58 -16.32 15.78 5.54 0.09 -16.24 16 20 N -0.56 -14.63 5.29 -10.96 -0.06 -14.68 16 21 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 22 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.94 13.05 55.50 0.72 -24.22 16 25 Si 0.93 21.48 29.55 -169.99 -5.02 16.46 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.07 0.47 7.75 -51.93 -0.40 0.06 16 33 H 0.09 0.69 5.26 -51.93 -0.27 0.41 16 34 H 0.16 1.00 5.01 -52.49 -0.26 0.73 16 35 H 0.17 0.67 8.06 -52.48 -0.42 0.25 16 36 H 0.18 1.83 8.05 -52.49 -0.42 1.41 16 37 H 0.09 1.25 7.69 -51.93 -0.40 0.86 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.35 6.54 8.12 -39.29 -0.32 6.22 16 40 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 41 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 42 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -34.92 371.24 -8.88 -43.80 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -5.66 Total: 13.82 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.97 Total: 5.60 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.52 Total: -58.15 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: 0.18 Total: -25.97 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.48 Total: -1.15 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.92 -8.88 -43.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214102343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.875 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds