Wall clock time and date at job start Tue Mar 31 2020 20:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 110.38694 * 2 1 4 4 C 1.54385 * 110.34298 * 237.77390 * 2 1 3 5 5 N 1.48143 * 104.61764 * 217.26086 * 4 2 1 6 6 C 1.34781 * 127.83702 * 219.60421 * 5 4 2 7 7 O 1.21634 * 119.99906 * 173.63969 * 6 5 4 8 8 C 1.47190 * 120.00132 * 353.64183 * 6 5 4 9 9 C 1.44427 * 123.45741 * 345.40865 * 8 6 5 10 10 C 1.32771 * 113.08057 * 180.02562 * 9 8 6 11 11 S 1.75498 * 110.57799 * 359.97438 * 10 9 8 12 12 C 1.36009 * 123.46274 * 165.11462 * 8 6 5 13 13 C 1.48148 * 104.32607 * 39.58110 * 5 4 2 14 14 C 1.54283 * 110.34673 * 122.23394 * 2 1 3 15 15 H 1.08993 * 110.34175 * 359.97438 * 14 2 1 16 16 N 1.46903 * 110.34089 * 237.74203 * 14 2 1 17 17 C 1.46906 * 110.99904 * 155.00021 * 16 14 2 18 18 C 1.50692 * 109.46991 * 180.02562 * 17 16 14 19 19 O 1.21297 * 120.00479 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99706 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99672 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00348 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99352 * 179.97438 * 21 20 18 24 24 N 1.31403 * 120.00567 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99362 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47364 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47139 * 120.00178 * 25 23 21 28 28 H 1.48501 * 109.46556 * 239.99885 * 25 23 21 29 29 H 1.09005 * 109.47089 * 297.76417 * 1 2 3 30 30 H 1.08997 * 109.47737 * 57.76523 * 1 2 3 31 31 H 1.09004 * 109.47052 * 177.77144 * 1 2 3 32 32 H 1.09005 * 110.40771 * 336.04242 * 4 2 1 33 33 H 1.08997 * 110.40927 * 98.47316 * 4 2 1 34 34 H 1.08001 * 123.46058 * 0.02562 * 9 8 6 35 35 H 1.08008 * 124.71071 * 180.02562 * 10 9 8 36 36 H 1.07997 * 124.58601 * 359.97438 * 12 8 6 37 37 H 1.08998 * 110.40921 * 201.62700 * 13 5 4 38 38 H 1.09000 * 110.40344 * 79.20018 * 13 5 4 39 39 H 1.00899 * 110.99853 * 278.94662 * 16 14 2 40 40 H 1.09007 * 109.46616 * 299.99990 * 17 16 14 41 41 H 1.09001 * 109.46848 * 59.99635 * 17 16 14 42 42 H 0.97002 * 120.00376 * 359.97438 * 20 18 17 43 43 H 0.96996 * 120.00179 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0666 -0.7719 -1.2246 5 7 3.2663 -1.4816 -0.7228 6 6 4.4425 -1.6659 -1.3546 7 8 5.3771 -2.1731 -0.7641 8 6 4.5960 -1.2534 -2.7592 9 6 3.4824 -0.9322 -3.6210 10 6 3.8560 -0.5862 -4.8472 11 16 5.6038 -0.6395 -4.9975 12 6 5.8013 -1.1300 -3.3772 13 6 2.8802 -1.9421 0.6313 14 6 2.0664 -0.7716 1.2236 15 1 1.2399 -1.1502 1.8249 16 7 2.9332 0.0947 2.0337 17 6 2.9733 -0.3588 3.4304 18 6 3.8697 0.5523 4.2288 19 8 4.4213 1.4872 3.6875 20 7 4.0592 0.3277 5.5441 21 6 4.8751 1.1563 6.2704 22 1 5.3656 1.9892 5.7886 23 6 5.0701 0.9250 7.6266 24 7 4.4729 -0.0880 8.2130 25 14 6.1812 2.0545 8.6163 26 1 6.7301 3.1110 7.7288 27 1 5.3992 2.6836 9.7107 28 1 7.2982 1.2661 9.1960 29 1 -0.3633 0.4787 0.9094 30 1 -0.3634 0.5481 -0.8692 31 1 -0.3633 -1.0269 -0.0400 32 1 1.3234 -1.4860 -1.5794 33 1 2.3399 -0.0793 -2.0206 34 1 2.4516 -0.9696 -3.3009 35 1 3.1785 -0.3095 -5.6415 36 1 6.7542 -1.3194 -2.9056 37 1 3.7673 -2.1325 1.2354 38 1 2.2640 -2.8389 0.5663 39 1 3.8621 0.1439 1.6427 40 1 1.9670 -0.3358 3.8488 41 1 3.3605 -1.3769 3.4708 42 1 3.6184 -0.4201 5.9770 43 1 4.6088 -0.2492 9.1597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214102343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:23 Heat of formation + Delta-G solvation = -46.404702 kcal Electronic energy + Delta-G solvation = -26386.170875 eV Core-core repulsion = 22557.313180 eV Total energy + Delta-G solvation = -3828.857695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48850 -40.21019 -39.21850 -37.81008 -36.19220 -35.46045 -33.52513 -33.26361 -30.81107 -30.29571 -28.09454 -27.37641 -26.27640 -25.20054 -23.65115 -21.66346 -21.38882 -20.82603 -20.22091 -19.92490 -18.93966 -17.90081 -17.38876 -17.12053 -16.96918 -16.63703 -16.31240 -16.08989 -15.68574 -15.31391 -15.22011 -14.96922 -14.58054 -14.12008 -13.90487 -13.85578 -13.74566 -13.65730 -13.53675 -13.41317 -13.10420 -13.00826 -12.88494 -12.81457 -12.44533 -12.17326 -12.14644 -11.98232 -11.72654 -11.54783 -11.47222 -11.13174 -10.39749 -10.14305 -10.04811 -9.91725 -9.44126 -9.23729 -8.49766 -5.98662 -0.23108 0.57414 0.92827 0.98768 1.34083 1.39098 1.53716 1.91815 2.01416 2.21341 2.26868 2.86496 3.17004 3.36989 3.52950 3.55775 3.77962 3.92283 4.10255 4.15985 4.27683 4.33834 4.36272 4.43515 4.46563 4.49712 4.56129 4.65350 4.67098 4.75701 4.88427 4.92223 5.06883 5.19123 5.19842 5.27078 5.36896 5.38493 5.51209 5.89107 6.09883 6.22149 6.44191 6.56868 7.00177 7.09428 7.52274 8.08094 8.67935 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.002353 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.980813 B =11897.975032 C =12908.846972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 H 0.073 0.927 4 C 0.092 3.908 5 N -0.614 5.614 6 C 0.586 3.414 7 O -0.596 6.596 8 C -0.180 4.180 9 C -0.130 4.130 10 C -0.223 4.223 11 S 0.233 5.767 12 C -0.209 4.209 13 C 0.073 3.927 14 C 0.077 3.923 15 H 0.119 0.881 16 N -0.668 5.668 17 C 0.063 3.937 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.076 0.924 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.275 1.275 27 H -0.267 1.267 28 H -0.271 1.271 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.183 0.817 35 H 0.206 0.794 36 H 0.159 0.841 37 H 0.050 0.950 38 H 0.104 0.896 39 H 0.335 0.665 40 H 0.115 0.885 41 H 0.060 0.940 42 H 0.397 0.603 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.004 -5.320 -27.940 30.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 H 0.091 0.909 4 C -0.030 4.030 5 N -0.346 5.346 6 C 0.376 3.624 7 O -0.479 6.479 8 C -0.199 4.199 9 C -0.157 4.157 10 C -0.358 4.358 11 S 0.498 5.502 12 C -0.348 4.348 13 C -0.052 4.052 14 C -0.033 4.033 15 H 0.136 0.864 16 N -0.298 5.298 17 C -0.069 4.069 18 C 0.223 3.777 19 O -0.513 6.513 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.094 0.906 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.200 1.200 27 H -0.192 1.192 28 H -0.196 1.196 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.200 0.800 35 H 0.223 0.777 36 H 0.177 0.823 37 H 0.068 0.932 38 H 0.122 0.878 39 H 0.153 0.847 40 H 0.133 0.867 41 H 0.078 0.922 42 H 0.231 0.769 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.566 -4.275 -28.914 30.753 hybrid contribution 0.578 -1.059 2.557 2.827 sum -8.987 -5.334 -26.357 28.353 Atomic orbital electron populations 1.21750 0.91238 1.03218 1.02834 1.22168 0.97863 0.99395 0.91947 0.90855 1.23278 0.85717 0.96420 0.97540 1.48777 1.13251 1.55123 1.17419 1.17798 0.80658 0.77723 0.86209 1.90784 1.40389 1.47935 1.68817 1.20266 0.94424 1.10977 0.94202 1.21844 1.00054 1.01306 0.92516 1.26014 0.98978 1.08817 1.01967 1.82931 1.02348 1.61429 1.03446 1.25769 1.02115 1.04714 1.02173 1.23239 0.99084 0.99277 0.83572 1.22895 0.95472 0.90183 0.94780 0.86359 1.60307 1.16920 1.52023 1.00597 1.21625 1.00306 0.95413 0.89553 1.20929 0.85919 0.87978 0.82880 1.90494 1.54528 1.35136 1.71144 1.41931 1.42949 1.28388 1.07677 1.19683 1.24694 1.10092 0.91947 0.90601 1.26054 0.99224 0.98687 0.97294 1.69668 1.43944 1.29573 1.12810 0.84871 0.77849 0.77825 0.77774 1.19974 1.19208 1.19581 0.92754 0.90600 0.90648 0.87174 0.87848 0.80029 0.77728 0.82286 0.93150 0.87839 0.84692 0.86683 0.92166 0.76886 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.92 71.98 0.64 -0.81 16 2 C -0.09 -1.61 3.45 -9.89 -0.03 -1.64 16 3 H 0.07 1.65 7.95 -2.38 -0.02 1.63 16 4 C 0.09 1.30 4.83 86.53 0.42 1.72 16 5 N -0.61 -14.51 3.32 -812.09 -2.69 -17.20 16 6 C 0.59 17.63 7.83 86.59 0.68 18.30 16 7 O -0.60 -23.85 17.05 -4.14 -0.07 -23.92 16 8 C -0.18 -4.16 5.88 -19.87 -0.12 -4.27 16 9 C -0.13 -1.82 8.56 22.67 0.19 -1.62 16 10 C -0.22 -2.24 11.12 66.64 0.74 -1.50 16 11 S 0.23 2.96 23.02 -56.49 -1.30 1.66 16 12 C -0.21 -4.51 10.55 67.30 0.71 -3.80 16 13 C 0.07 1.71 6.51 86.53 0.56 2.27 16 14 C 0.08 1.72 3.03 45.82 0.14 1.85 16 15 H 0.12 2.11 7.39 -2.39 -0.02 2.10 16 16 N -0.67 -22.14 5.80 -490.90 -2.85 -24.98 16 17 C 0.06 2.26 6.02 85.55 0.51 2.77 16 18 C 0.44 21.83 7.82 87.65 0.69 22.51 16 19 O -0.63 -36.83 15.78 -3.08 -0.05 -36.88 16 20 N -0.57 -30.59 5.29 -306.98 -1.62 -32.21 16 21 C -0.33 -19.74 9.68 84.04 0.81 -18.93 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 24 N -0.92 -50.70 13.05 21.66 0.28 -50.42 16 25 Si 0.99 44.26 29.55 68.60 2.03 46.28 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 29 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.56 8.10 -2.38 -0.02 0.54 16 32 H 0.11 0.86 7.75 -2.38 -0.02 0.84 16 33 H 0.10 1.26 5.26 -2.39 -0.01 1.25 16 34 H 0.18 1.57 5.01 -2.91 -0.01 1.56 16 35 H 0.21 0.56 8.06 -2.91 -0.02 0.53 16 36 H 0.16 3.78 8.05 -2.91 -0.02 3.76 16 37 H 0.05 1.56 7.69 -2.39 -0.02 1.54 16 38 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.33 13.13 8.12 -89.69 -0.73 12.40 16 40 H 0.12 3.49 8.07 -2.38 -0.02 3.47 16 41 H 0.06 1.97 8.12 -2.39 -0.02 1.95 16 42 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 43 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -81.69 371.24 -0.25 -81.94 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -0.39 Total: 39.11 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 6.42 Total: 16.62 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -6.88 Total: -124.81 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -0.12 Total: -60.80 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.30 Total: 1.66 kcal Total: -81.69 -0.25 -81.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214102343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.535 kcal (2) G-P(sol) polarization free energy of solvation -81.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds