Wall clock time and date at job start Tue Mar 31 2020 20:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21280 * 119.99909 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00100 * 179.97438 * 6 5 4 9 9 N 1.46500 * 109.47018 * 180.02562 * 8 6 5 10 10 C 1.34772 * 120.00194 * 179.97438 * 9 8 6 11 11 O 1.21706 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.46579 * 120.00232 * 180.02562 * 10 9 8 13 13 C 1.36652 * 125.45731 * 179.97438 * 12 10 9 14 14 C 1.37473 * 113.29973 * 179.97438 * 13 12 10 15 15 C 1.33826 * 115.09861 * 0.02562 * 14 13 12 16 16 S 1.70618 * 110.95058 * 359.76057 * 15 14 13 17 17 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 18 18 C 1.54914 * 104.82992 * 24.12623 * 17 5 4 19 19 H 1.09000 * 111.00339 * 81.07133 * 18 17 5 20 20 N 1.46505 * 111.00202 * 204.91694 * 18 17 5 21 21 C 1.36935 * 120.00217 * 273.54861 * 20 18 17 22 22 H 1.08006 * 119.99642 * 359.97438 * 21 20 18 23 23 C 1.38808 * 120.00007 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00356 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99913 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47230 * 359.97438 * 25 23 21 27 27 H 1.48491 * 109.47384 * 120.00033 * 25 23 21 28 28 H 1.48504 * 109.46904 * 239.99911 * 25 23 21 29 29 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 30 30 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 31 31 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 32 32 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 33 33 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 34 34 H 1.08996 * 109.47275 * 300.00392 * 8 6 5 35 35 H 1.09002 * 109.46941 * 60.00490 * 8 6 5 36 36 H 0.97003 * 119.99961 * 0.02562 * 9 8 6 37 37 H 1.08000 * 123.35085 * 359.94546 * 13 12 10 38 38 H 1.07993 * 122.45580 * 180.02562 * 14 13 12 39 39 H 1.07996 * 124.52379 * 180.02562 * 15 14 13 40 40 H 1.08999 * 110.36956 * 142.96999 * 17 5 4 41 41 H 1.09001 * 110.36709 * 265.18192 * 17 5 4 42 42 H 0.96998 * 119.99743 * 93.55096 * 20 18 17 43 43 H 0.96989 * 120.00348 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 3.7119 -2.5604 -2.6621 8 6 5.1630 -3.1076 -0.8831 9 7 5.8026 -3.9477 -1.8987 10 6 6.8824 -4.6879 -1.5785 11 8 7.3259 -4.6587 -0.4454 12 6 7.5228 -5.5279 -2.5947 13 6 8.6184 -6.3194 -2.3934 14 6 9.0103 -7.0024 -3.5203 15 6 8.2633 -6.7790 -4.6080 16 16 7.0006 -5.6836 -4.2664 17 6 3.4656 -1.2541 0.6849 18 6 2.0831 -0.7972 1.2139 19 1 1.4480 -1.6542 1.4382 20 7 2.2294 0.0667 2.3880 21 6 2.3264 -0.4860 3.6370 22 1 2.2947 -1.5590 3.7567 23 6 2.4645 0.3326 4.7495 24 7 2.5027 1.6401 4.6038 25 14 2.5976 -0.4215 6.4533 26 1 2.5290 -1.9011 6.3465 27 1 3.8905 -0.0286 7.0690 28 1 1.4784 0.0657 7.2990 29 1 -0.3633 -1.0272 0.0321 30 1 -0.3634 0.5414 0.8735 31 1 -0.3633 0.4858 -0.9056 32 1 2.3741 -0.1026 -1.9977 33 1 1.3121 -1.4741 -1.5791 34 1 5.8817 -2.3780 -0.5104 35 1 4.8185 -3.7322 -0.0589 36 1 5.4494 -3.9706 -2.8019 37 1 9.1263 -6.4000 -1.4437 38 1 9.8589 -7.6703 -3.5274 39 1 8.4341 -7.2349 -5.5720 40 1 3.7975 -2.1479 1.2131 41 1 4.1987 -0.4550 0.7952 42 1 2.2575 1.0303 2.2805 43 1 2.5996 2.2121 5.3810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216671836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:34 Heat of formation + Delta-G solvation = -21.038772 kcal Electronic energy + Delta-G solvation = -25928.803315 eV Core-core repulsion = 22101.045569 eV Total energy + Delta-G solvation = -3827.757746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.40179 -39.57362 -37.95431 -37.54882 -34.63111 -34.17345 -32.67604 -30.82736 -30.53245 -28.43819 -27.59712 -25.99487 -24.77234 -24.00925 -21.82717 -21.42728 -20.12540 -19.93127 -19.30467 -18.74539 -17.26280 -16.78631 -16.62050 -16.28522 -15.77936 -15.77249 -15.38070 -14.72346 -14.62244 -14.12330 -13.77659 -13.54463 -13.41434 -13.20991 -13.10417 -13.04122 -12.95682 -12.72125 -12.62996 -12.40076 -11.96161 -11.73859 -11.31268 -11.16751 -11.06804 -10.81209 -10.67840 -10.36095 -10.27282 -10.02714 -9.98345 -9.78547 -9.48211 -9.18080 -9.08220 -8.95355 -8.52487 -7.14654 -5.89832 -3.21122 0.16925 1.12009 1.53108 2.06663 2.52977 2.58738 2.96550 3.24851 3.37488 3.44394 3.45751 4.35494 4.50060 4.54717 4.65336 4.91248 4.94558 5.03105 5.12253 5.12498 5.23034 5.29687 5.46774 5.56489 5.59759 5.66644 5.74590 5.81193 5.82702 5.93253 5.95806 5.99539 6.12160 6.17442 6.26274 6.37214 6.39116 6.53013 6.78695 7.19497 7.55074 7.60410 7.89329 8.05831 8.27405 9.39908 9.92176 10.26971 11.31968 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.002396 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.246581 B =11682.540902 C =13365.923434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.086 0.914 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.522 3.478 7 O -0.554 6.554 8 C 0.105 3.895 9 N -0.714 5.714 10 C 0.592 3.408 11 O -0.526 6.526 12 C -0.266 4.266 13 C -0.055 4.055 14 C -0.151 4.151 15 C -0.232 4.232 16 S 0.209 5.791 17 C 0.065 3.935 18 C 0.178 3.822 19 H 0.067 0.933 20 N -0.710 5.710 21 C -0.249 4.249 22 H 0.073 0.927 23 C -0.007 4.007 24 N -0.928 5.928 25 Si 0.907 3.093 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.409 0.591 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.169 0.831 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.387 0.613 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.097 -13.071 -19.357 24.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 H 0.104 0.896 4 C -0.006 4.006 5 N -0.338 5.338 6 C 0.309 3.691 7 O -0.433 6.433 8 C -0.022 4.022 9 N -0.369 5.369 10 C 0.378 3.622 11 O -0.404 6.404 12 C -0.386 4.386 13 C -0.088 4.088 14 C -0.182 4.182 15 C -0.370 4.370 16 S 0.476 5.524 17 C -0.060 4.060 18 C 0.065 3.935 19 H 0.084 0.916 20 N -0.350 5.350 21 C -0.380 4.380 22 H 0.091 0.909 23 C -0.204 4.204 24 N -0.576 5.576 25 Si 0.738 3.262 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.246 0.754 37 H 0.173 0.827 38 H 0.164 0.836 39 H 0.187 0.813 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.222 0.778 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.096 -12.622 -19.877 24.322 hybrid contribution 1.313 -0.709 1.326 1.996 sum 7.409 -13.331 -18.551 24.016 Atomic orbital electron populations 1.21656 0.93779 1.01851 1.01865 1.22532 0.96547 0.99842 0.94390 0.89605 1.22014 0.87162 0.94336 0.97045 1.48433 1.29630 1.42973 1.12739 1.20023 0.83585 0.79416 0.86028 1.90659 1.71219 1.65057 1.16402 1.21082 0.94182 0.95347 0.91568 1.45556 1.30529 1.45774 1.15046 1.16884 0.79578 0.78922 0.86847 1.90871 1.63709 1.65454 1.20320 1.24585 1.05500 1.09920 0.98598 1.20835 0.94164 0.93552 1.00280 1.20066 1.02824 1.03504 0.91800 1.25386 1.01757 1.05593 1.04249 1.83253 1.27558 1.39010 1.02557 1.23697 1.03086 1.01298 0.77952 1.21410 0.91561 0.93790 0.86713 0.91561 1.42299 1.86766 1.05171 1.00717 1.19268 1.43194 0.91954 0.83579 0.90878 1.24768 1.02186 0.95346 0.98081 1.69660 1.56392 1.02121 1.29377 0.86122 0.77314 0.78289 0.84459 1.20403 1.21718 1.21780 0.92794 0.91334 0.93133 0.91752 0.91400 0.87821 0.87798 0.75359 0.82717 0.83625 0.81321 0.90822 0.90630 0.77797 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.14 37.15 0.34 -1.44 16 2 C -0.11 -1.65 3.19 -88.65 -0.28 -1.94 16 3 H 0.09 1.29 8.00 -51.93 -0.42 0.88 16 4 C 0.12 1.62 6.46 -3.07 -0.02 1.60 16 5 N -0.61 -8.86 3.33 -170.52 -0.57 -9.42 16 6 C 0.52 7.63 7.92 -10.98 -0.09 7.54 16 7 O -0.55 -9.11 15.99 5.56 0.09 -9.02 16 8 C 0.10 1.38 5.16 -5.19 -0.03 1.35 16 9 N -0.71 -9.04 5.52 -62.83 -0.35 -9.39 16 10 C 0.59 7.96 7.78 -12.90 -0.10 7.86 16 11 O -0.53 -8.70 16.84 5.18 0.09 -8.61 16 12 C -0.27 -2.89 6.45 -36.79 -0.24 -3.13 16 13 C -0.05 -0.53 10.01 -40.43 -0.40 -0.93 16 14 C -0.15 -1.11 10.15 -41.41 -0.42 -1.53 16 15 C -0.23 -1.56 10.92 29.18 0.32 -1.24 16 16 S 0.21 1.69 22.16 -107.50 -2.38 -0.69 16 17 C 0.07 1.04 6.39 -2.53 -0.02 1.02 16 18 C 0.18 3.13 3.14 -65.64 -0.21 2.92 16 19 H 0.07 1.20 8.03 -51.93 -0.42 0.79 16 20 N -0.71 -15.99 5.28 -51.21 -0.27 -16.26 16 21 C -0.25 -6.38 9.98 -15.06 -0.15 -6.53 16 22 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 24 N -0.93 -26.54 13.06 55.49 0.72 -25.82 16 25 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H 0.05 0.69 8.13 -51.93 -0.42 0.26 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.10 1.33 7.85 -51.93 -0.41 0.92 16 36 H 0.41 4.86 6.55 -40.82 -0.27 4.59 16 37 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.07 1.14 7.48 -51.93 -0.39 0.75 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.39 9.35 7.72 -40.82 -0.31 9.04 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -31.08 377.83 -9.35 -40.43 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.97 Total: 11.37 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -1.39 Total: 5.27 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.46 Total: -60.88 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.18 Total: -17.63 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.38 Total: -0.69 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.08 -9.35 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216671836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.395 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds