Wall clock time and date at job start Tue Mar 31 2020 20:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08993 * 110.06298 * 2 1 4 4 C 1.53996 * 109.91482 * 238.79685 * 2 1 3 5 5 H 1.09004 * 110.31117 * 358.33984 * 4 2 1 6 6 N 1.46496 * 110.30850 * 120.50708 * 4 2 1 7 7 C 1.34778 * 119.99882 * 202.17028 * 6 4 2 8 8 O 1.21633 * 120.00329 * 359.97438 * 7 6 4 9 9 C 1.47196 * 119.99817 * 180.02562 * 7 6 4 10 10 C 1.44421 * 123.45873 * 179.97438 * 9 7 6 11 11 C 1.32774 * 113.08451 * 179.97438 * 10 9 7 12 12 S 1.75513 * 110.57196 * 0.02562 * 11 10 9 13 13 C 1.36003 * 123.45879 * 359.69869 * 9 7 6 14 14 C 1.54598 * 105.13842 * 239.42346 * 4 2 1 15 15 C 1.54937 * 102.92295 * 338.04385 * 14 4 2 16 16 N 1.47895 * 109.91458 * 121.20728 * 2 1 3 17 17 C 1.46901 * 111.00067 * 265.19365 * 16 2 1 18 18 C 1.50700 * 109.46976 * 176.70745 * 17 16 2 19 19 O 1.21287 * 120.00492 * 353.75417 * 18 17 16 20 20 N 1.34780 * 119.99787 * 173.76254 * 18 17 16 21 21 C 1.37096 * 120.00067 * 179.72230 * 20 18 17 22 22 H 1.07997 * 119.99820 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99993 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00230 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00110 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47044 * 90.00272 * 25 23 21 27 27 H 1.48503 * 109.47298 * 210.00024 * 25 23 21 28 28 H 1.48496 * 109.47252 * 330.00264 * 25 23 21 29 29 H 1.08999 * 109.46739 * 300.24903 * 1 2 3 30 30 H 1.09000 * 109.46761 * 60.24756 * 1 2 3 31 31 H 1.08997 * 109.46830 * 180.24718 * 1 2 3 32 32 H 0.96998 * 119.99915 * 22.17060 * 6 4 2 33 33 H 1.07996 * 123.45846 * 0.02562 * 10 9 7 34 34 H 1.07995 * 124.71367 * 180.02562 * 11 10 9 35 35 H 1.08006 * 124.59516 * 0.02562 * 13 9 7 36 36 H 1.08995 * 110.72330 * 219.68437 * 14 4 2 37 37 H 1.08997 * 110.72719 * 96.39909 * 14 4 2 38 38 H 1.09002 * 110.66549 * 278.98568 * 15 14 4 39 39 H 1.08990 * 110.81529 * 155.91641 * 15 14 4 40 40 H 1.09001 * 109.46919 * 56.70648 * 17 16 2 41 41 H 1.08996 * 109.47448 * 296.70728 * 17 16 2 42 42 H 0.97006 * 120.00137 * 359.97438 * 20 18 17 43 43 H 0.96999 * 120.00604 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0547 -0.7501 -1.2384 5 1 1.2228 -1.1401 -1.8251 6 7 2.8836 0.1378 -2.0573 7 6 3.0743 -0.1334 -3.3637 8 8 2.5586 -1.1155 -3.8627 9 6 3.9077 0.7584 -4.1864 10 6 4.1620 0.5392 -5.5911 11 6 4.9400 1.4700 -6.1307 12 16 5.3977 2.6641 -4.9286 13 6 4.5128 1.8764 -3.7031 14 6 2.9059 -1.9117 -0.6763 15 6 3.2682 -1.4186 0.7471 16 7 2.0339 -0.7205 1.1893 17 6 2.3212 0.2122 2.2873 18 6 2.7541 -0.5633 3.5048 19 8 2.7089 -1.7753 3.4996 20 7 3.1913 0.0900 4.5996 21 6 3.5796 -0.6152 5.7092 22 1 3.5349 -1.6942 5.7062 23 6 4.0309 0.0583 6.8377 24 7 4.4036 -0.6176 7.9012 25 14 4.1090 1.9247 6.8426 26 1 2.8199 2.4728 7.3357 27 1 5.2100 2.3718 7.7332 28 1 4.3591 2.4133 5.4628 29 1 -0.3633 0.5177 0.8878 30 1 -0.3633 0.5100 -0.8922 31 1 -0.3633 -1.0276 0.0044 32 1 3.2952 0.9208 -1.6594 33 1 3.7600 -0.2956 -6.1458 34 1 5.2482 1.4897 -7.1656 35 1 4.4441 2.2176 -2.6807 36 1 3.8052 -2.0558 -1.2751 37 1 2.3214 -2.8305 -0.6290 38 1 4.1098 -0.7268 0.7120 39 1 3.4905 -2.2598 1.4035 40 1 1.4240 0.7852 2.5214 41 1 3.1185 0.8921 1.9872 42 1 3.2277 1.0594 4.6037 43 1 4.7190 -0.1475 8.6888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264130808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:20 Heat of formation + Delta-G solvation = -21.595191 kcal Electronic energy + Delta-G solvation = -26391.487912 eV Core-core repulsion = 22563.706038 eV Total energy + Delta-G solvation = -3827.781874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55008 -39.23005 -37.91638 -36.99709 -34.57212 -33.89387 -31.78165 -31.40744 -31.30288 -29.90779 -26.77029 -25.82806 -24.75728 -23.96453 -22.17272 -20.90280 -20.58780 -19.40106 -19.28121 -18.52066 -18.25544 -17.32015 -16.54646 -15.98627 -15.43742 -15.19757 -14.97177 -14.87047 -14.63665 -14.21389 -13.87023 -13.56092 -13.46924 -13.29440 -13.17552 -12.98949 -12.85122 -12.63134 -12.45963 -12.17041 -11.97492 -11.65895 -11.55468 -11.40521 -11.29993 -11.26276 -10.93071 -10.79198 -10.62342 -10.14080 -9.99533 -9.57759 -9.51630 -9.28265 -8.85183 -8.61943 -8.21385 -8.12770 -6.32691 -3.84146 0.33799 1.09962 1.47676 1.63628 2.85356 2.99053 3.04087 3.08314 3.12494 3.71786 3.91365 4.08010 4.26908 4.36219 4.60528 4.62528 4.80542 4.82518 4.94759 4.97895 5.18236 5.20860 5.31801 5.37580 5.40570 5.50264 5.57036 5.63867 5.71846 5.78571 5.83544 5.85914 5.88489 5.92507 6.09598 6.21653 6.31799 6.41553 7.03368 7.07647 7.21801 7.56509 7.95431 8.12689 8.58456 8.93750 9.40573 9.81613 10.80472 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.002440 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.839230 B =11472.723740 C =12569.478428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.054 0.946 4 C 0.139 3.861 5 H 0.102 0.898 6 N -0.718 5.718 7 C 0.578 3.422 8 O -0.533 6.533 9 C -0.153 4.153 10 C -0.085 4.085 11 C -0.237 4.237 12 S 0.187 5.813 13 C -0.213 4.213 14 C -0.130 4.130 15 C 0.039 3.961 16 N -0.484 5.484 17 C 0.035 3.965 18 C 0.453 3.547 19 O -0.557 6.557 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.271 1.271 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.396 0.604 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.037 0.963 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.369 0.631 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 10.989 -26.588 28.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.054 4.054 3 H 0.072 0.928 4 C 0.034 3.966 5 H 0.120 0.880 6 N -0.369 5.369 7 C 0.364 3.636 8 O -0.410 6.410 9 C -0.171 4.171 10 C -0.114 4.114 11 C -0.372 4.372 12 S 0.452 5.548 13 C -0.351 4.351 14 C -0.169 4.169 15 C -0.088 4.088 16 N -0.209 5.209 17 C -0.097 4.097 18 C 0.238 3.762 19 O -0.438 6.438 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.172 0.828 34 H 0.188 0.812 35 H 0.187 0.813 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.202 0.798 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.021 10.377 -26.555 28.510 hybrid contribution 0.142 1.364 0.389 1.425 sum 0.163 11.741 -26.165 28.679 Atomic orbital electron populations 1.21718 0.92952 1.03075 1.01348 1.22664 0.97225 0.95920 0.89546 0.92791 1.21935 0.93674 0.90052 0.90932 0.87994 1.46050 1.52280 1.29242 1.09357 1.17584 0.80130 0.84517 0.81415 1.90804 1.49534 1.28219 1.72482 1.20362 1.04290 0.97440 0.95058 1.21159 0.97996 0.99910 0.92334 1.25550 1.06949 1.00476 1.04177 1.83144 1.47066 1.26650 0.97918 1.25703 1.03730 1.00288 1.05403 1.22915 1.00055 0.98287 0.95678 1.23329 0.90294 0.99687 0.95510 1.64503 1.27756 1.24582 1.04032 1.22110 1.00730 0.94286 0.92557 1.19569 0.83862 0.88562 0.84171 1.90556 1.57174 1.13528 1.82508 1.42214 1.59611 1.07642 1.13724 1.19420 1.39852 0.94861 0.89101 0.86260 1.25036 0.97417 0.98384 0.95361 1.69618 1.43031 1.35727 1.03761 0.86677 0.78909 0.85525 0.78268 1.19604 1.20203 1.19636 0.92097 0.92584 0.91301 0.76913 0.82760 0.81225 0.81335 0.90854 0.89570 0.94498 0.87741 0.89035 0.93542 0.79809 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.32 37.16 0.35 -1.07 16 2 C 0.06 0.64 2.87 -66.64 -0.19 0.45 16 3 H 0.05 0.54 7.23 -51.93 -0.38 0.17 16 4 C 0.14 1.60 2.93 -66.57 -0.20 1.40 16 5 H 0.10 1.26 7.19 -51.93 -0.37 0.89 16 6 N -0.72 -7.15 5.05 -53.63 -0.27 -7.42 16 7 C 0.58 6.73 7.79 -12.62 -0.10 6.64 16 8 O -0.53 -8.05 16.50 5.25 0.09 -7.96 16 9 C -0.15 -1.44 5.98 -104.63 -0.63 -2.07 16 10 C -0.09 -0.73 10.10 -39.02 -0.39 -1.12 16 11 C -0.24 -1.51 11.12 28.86 0.32 -1.19 16 12 S 0.19 1.07 23.02 -107.50 -2.48 -1.40 16 13 C -0.21 -1.50 10.38 29.93 0.31 -1.19 16 14 C -0.13 -1.69 6.78 -24.87 -0.17 -1.86 16 15 C 0.04 0.60 5.79 -1.89 -0.01 0.59 16 16 N -0.48 -7.40 4.62 -224.00 -1.03 -8.44 16 17 C 0.04 0.56 5.18 -4.98 -0.03 0.54 16 18 C 0.45 10.06 7.47 -10.98 -0.08 9.98 16 19 O -0.56 -14.64 14.39 5.55 0.08 -14.56 16 20 N -0.59 -13.86 5.09 -10.97 -0.06 -13.91 16 21 C -0.30 -8.49 10.16 -14.94 -0.15 -8.64 16 22 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 25 Si 0.88 19.10 27.73 -169.99 -4.71 14.39 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.40 3.05 6.78 -40.82 -0.28 2.77 16 33 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.17 0.83 7.01 -52.48 -0.37 0.47 16 36 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.04 0.53 7.91 -51.93 -0.41 0.12 16 39 H 0.10 1.94 6.84 -51.93 -0.36 1.59 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.05 0.65 7.99 -51.93 -0.41 0.23 16 42 H 0.37 7.56 5.77 -40.82 -0.24 7.32 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -34.28 369.74 -8.84 -43.12 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.74 Total: 11.97 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.06 Total: 3.46 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.59 Total: -54.59 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.17 Total: -22.52 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.39 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.48 Total: -1.40 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.28 -8.84 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264130808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.529 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds