Wall clock time and date at job start Tue Mar 31 2020 20:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.88493 * 2 1 4 4 C 1.55127 * 110.93815 * 124.08000 * 2 1 3 5 5 N 1.47429 * 104.72303 * 155.29123 * 4 2 1 6 6 C 1.34773 * 125.64650 * 155.81861 * 5 4 2 7 7 O 1.21274 * 120.00314 * 359.71146 * 6 5 4 8 8 C 1.50704 * 119.99393 * 179.71398 * 6 5 4 9 9 N 1.46503 * 109.46551 * 179.97438 * 8 6 5 10 10 C 1.34785 * 119.99835 * 179.97438 * 9 8 6 11 11 O 1.21701 * 119.99585 * 0.02562 * 10 9 8 12 12 C 1.46580 * 120.00095 * 180.02562 * 10 9 8 13 13 C 1.36650 * 125.45869 * 180.02562 * 12 10 9 14 14 C 1.37469 * 113.29739 * 180.02562 * 13 12 10 15 15 C 1.33813 * 115.09923 * 0.27518 * 14 13 12 16 16 S 1.70620 * 110.95710 * 359.57795 * 15 14 13 17 17 C 1.47023 * 108.69838 * 335.55072 * 5 4 2 18 18 C 1.54320 * 107.27342 * 1.28870 * 17 5 4 19 19 H 1.09008 * 110.71974 * 263.64930 * 18 17 5 20 20 N 1.46495 * 110.71876 * 140.55719 * 18 17 5 21 21 C 1.36937 * 120.00159 * 86.45327 * 20 18 17 22 22 H 1.07997 * 120.00172 * 0.02562 * 21 20 18 23 23 C 1.38821 * 120.00130 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99848 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00026 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47092 * 90.00244 * 25 23 21 27 27 H 1.48497 * 109.46941 * 210.00173 * 25 23 21 28 28 H 1.48502 * 109.47151 * 330.00617 * 25 23 21 29 29 H 1.08999 * 109.47333 * 183.87647 * 1 2 3 30 30 H 1.08998 * 109.47628 * 303.88041 * 1 2 3 31 31 H 1.08999 * 109.47398 * 63.87877 * 1 2 3 32 32 H 1.09004 * 110.49794 * 36.44653 * 4 2 1 33 33 H 1.09005 * 110.34172 * 274.05224 * 4 2 1 34 34 H 1.09004 * 109.47274 * 60.00591 * 8 6 5 35 35 H 1.08993 * 109.47587 * 299.99361 * 8 6 5 36 36 H 0.96991 * 120.00506 * 0.02562 * 9 8 6 37 37 H 1.08001 * 123.34765 * 0.05528 * 13 12 10 38 38 H 1.08002 * 122.44599 * 179.97438 * 14 13 12 39 39 H 1.07998 * 124.52215 * 179.72942 * 15 14 13 40 40 H 1.09001 * 109.87992 * 120.70574 * 17 5 4 41 41 H 1.09005 * 109.88303 * 241.71734 * 17 5 4 42 42 H 0.97001 * 119.99876 * 266.44946 * 20 18 17 43 43 H 0.96994 * 120.00100 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0183 0.0000 4 6 2.0843 -0.8119 1.2000 5 7 3.4280 -1.2422 0.7725 6 6 4.4489 -1.5604 1.5928 7 8 4.3025 -1.4990 2.7951 8 6 5.7725 -1.9923 1.0159 9 7 6.7093 -2.2797 2.1050 10 6 7.9635 -2.6863 1.8253 11 8 8.3179 -2.8142 0.6681 12 6 8.9007 -2.9743 2.9149 13 6 10.1929 -3.3910 2.7598 14 6 10.8476 -3.5878 3.9524 15 6 10.1172 -3.3468 5.0474 16 16 8.5422 -2.8396 4.6310 17 6 3.4678 -1.2730 -0.6969 18 6 2.0861 -0.8074 -1.2025 19 1 1.4482 -1.6631 -1.4242 20 7 2.2278 0.0503 -2.3817 21 6 2.3024 -0.5083 -3.6297 22 1 2.2563 -1.5811 -3.7448 23 6 2.4361 0.3045 -4.7471 24 7 2.4917 1.6120 -4.6069 25 14 2.5385 -0.4575 -6.4495 26 1 1.1722 -0.5889 -7.0161 27 1 3.3589 0.4106 -7.3318 28 1 3.1659 -1.8001 -6.3539 29 1 -0.3634 -1.0253 0.0695 30 1 -0.3634 0.5729 0.8531 31 1 -0.3634 0.4524 -0.9227 32 1 1.4536 -1.6785 1.3985 33 1 2.1523 -0.1802 2.0858 34 1 6.1749 -1.1941 0.3921 35 1 5.6306 -2.8887 0.4123 36 1 6.4268 -2.1780 3.0272 37 1 10.6539 -3.5496 1.7961 38 1 11.8748 -3.9175 4.0020 39 1 10.4773 -3.4563 6.0597 40 1 4.2425 -0.5981 -1.0610 41 1 3.6685 -2.2876 -1.0412 42 1 2.2687 1.0139 -2.2784 43 1 2.5847 2.1800 -5.3877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274290679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:39 Heat of formation + Delta-G solvation = -20.593862 kcal Electronic energy + Delta-G solvation = -25944.220737 eV Core-core repulsion = 22116.482284 eV Total energy + Delta-G solvation = -3827.738453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.38556 -39.56089 -37.94691 -37.54060 -34.61446 -34.16305 -32.65619 -30.81163 -30.52024 -28.43018 -27.57280 -25.98511 -24.76078 -23.99935 -21.81887 -21.40303 -20.05299 -20.02992 -19.27992 -18.70490 -17.19670 -16.78506 -16.63059 -16.26651 -15.79778 -15.75893 -15.34469 -14.77450 -14.63210 -14.08794 -13.69641 -13.62745 -13.49538 -13.21424 -13.09189 -13.04787 -12.80440 -12.62087 -12.60209 -12.28808 -12.15737 -11.63069 -11.30188 -11.19436 -11.05271 -10.80690 -10.67401 -10.34414 -10.31042 -10.05026 -9.97210 -9.76809 -9.46424 -9.16714 -9.05248 -8.94245 -8.50886 -7.14862 -5.88996 -3.20385 0.18141 1.13164 1.54197 2.07895 2.54330 2.60588 2.98028 3.26778 3.37943 3.44156 3.45266 4.37970 4.50409 4.55280 4.66428 4.91772 4.95660 5.05965 5.12222 5.13574 5.24658 5.32758 5.49863 5.55544 5.60848 5.67912 5.74027 5.82324 5.83263 5.91166 5.97000 6.01468 6.11983 6.18983 6.27691 6.38870 6.42855 6.54324 6.79480 7.21189 7.56021 7.60922 7.91003 8.07101 8.28147 9.40479 9.93063 10.27739 11.32723 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.002409 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.849636 B =11619.740340 C =13278.035601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.085 0.915 4 C 0.114 3.886 5 N -0.605 5.605 6 C 0.522 3.478 7 O -0.554 6.554 8 C 0.105 3.895 9 N -0.714 5.714 10 C 0.592 3.408 11 O -0.526 6.526 12 C -0.265 4.265 13 C -0.055 4.055 14 C -0.151 4.151 15 C -0.232 4.232 16 S 0.209 5.791 17 C 0.065 3.935 18 C 0.178 3.822 19 H 0.068 0.932 20 N -0.711 5.711 21 C -0.250 4.250 22 H 0.073 0.927 23 C -0.007 4.007 24 N -0.928 5.928 25 Si 0.908 3.092 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.408 0.592 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.169 0.831 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.387 0.613 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.434 -8.642 19.974 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.337 5.337 6 C 0.310 3.690 7 O -0.434 6.434 8 C -0.022 4.022 9 N -0.369 5.369 10 C 0.377 3.623 11 O -0.403 6.403 12 C -0.386 4.386 13 C -0.088 4.088 14 C -0.182 4.182 15 C -0.370 4.370 16 S 0.476 5.524 17 C -0.061 4.061 18 C 0.065 3.935 19 H 0.086 0.914 20 N -0.351 5.351 21 C -0.381 4.381 22 H 0.091 0.909 23 C -0.204 4.204 24 N -0.575 5.575 25 Si 0.738 3.262 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.246 0.754 37 H 0.173 0.827 38 H 0.164 0.836 39 H 0.187 0.813 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.222 0.778 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.360 -8.366 20.465 23.636 hybrid contribution 1.456 -0.455 -1.330 2.023 sum 9.815 -8.821 19.135 23.244 Atomic orbital electron populations 1.21611 0.93738 1.01605 1.02194 1.22669 0.96429 0.99788 0.94430 0.89674 1.22363 0.82226 0.98278 0.97956 1.48451 1.11837 1.65038 1.08422 1.20025 0.85019 0.77640 0.86297 1.90655 1.83089 1.55177 1.14489 1.21082 0.87367 1.03704 0.90033 1.45556 1.11516 1.69050 1.10784 1.16888 0.80791 0.76988 0.87588 1.90870 1.77044 1.52467 1.19948 1.24588 0.99977 1.16884 0.97119 1.20834 0.91752 0.96029 1.00233 1.20062 1.02116 1.05086 0.90920 1.25381 0.99599 1.07863 1.04154 1.83253 1.10484 1.61127 0.97537 1.23526 1.03946 1.01767 0.76822 1.21240 0.91367 0.93922 0.86946 0.91431 1.42361 1.86885 1.05292 1.00527 1.19228 1.43430 0.91943 0.83517 0.90923 1.24774 1.02176 0.95358 0.98063 1.69654 1.56282 1.02313 1.29294 0.86190 0.77517 0.78158 0.84298 1.21609 1.21701 1.20587 0.92796 0.93124 0.91240 0.91336 0.90753 0.87722 0.87909 0.75374 0.82717 0.83628 0.81326 0.90348 0.91789 0.77825 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.31 37.16 0.35 -1.41 16 2 C -0.11 -1.66 3.26 -88.36 -0.29 -1.95 16 3 H 0.08 1.34 8.00 -51.93 -0.42 0.92 16 4 C 0.11 1.57 6.38 -2.41 -0.02 1.55 16 5 N -0.60 -8.92 3.32 -170.37 -0.57 -9.49 16 6 C 0.52 7.74 7.92 -10.98 -0.09 7.65 16 7 O -0.55 -9.19 15.92 5.56 0.09 -9.10 16 8 C 0.10 1.41 5.35 -5.19 -0.03 1.38 16 9 N -0.71 -9.21 5.52 -62.83 -0.35 -9.56 16 10 C 0.59 8.10 7.78 -12.89 -0.10 8.00 16 11 O -0.53 -8.83 16.84 5.19 0.09 -8.75 16 12 C -0.27 -2.94 6.45 -36.79 -0.24 -3.18 16 13 C -0.06 -0.54 10.01 -40.44 -0.40 -0.94 16 14 C -0.15 -1.13 10.15 -41.41 -0.42 -1.55 16 15 C -0.23 -1.59 10.92 29.18 0.32 -1.28 16 16 S 0.21 1.72 22.16 -107.50 -2.38 -0.66 16 17 C 0.07 1.04 6.24 -3.07 -0.02 1.02 16 18 C 0.18 3.11 3.05 -66.10 -0.20 2.91 16 19 H 0.07 1.19 8.02 -51.92 -0.42 0.78 16 20 N -0.71 -16.07 5.18 -51.65 -0.27 -16.33 16 21 C -0.25 -6.41 9.98 -15.06 -0.15 -6.56 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 24 N -0.93 -26.66 13.06 55.49 0.72 -25.93 16 25 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 29 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.87 7.99 -51.93 -0.41 0.45 16 33 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 34 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.41 4.95 6.55 -40.82 -0.27 4.68 16 37 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.17 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.39 9.44 7.71 -40.82 -0.31 9.13 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 378.61 15.07 5.71 5.71 Total: -1.00 -31.16 378.61 -9.37 -40.53 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.01 Total: 11.77 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.38 Total: 5.37 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.46 Total: -61.31 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.18 Total: -17.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.38 Total: -0.66 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.16 -9.37 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274290679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.939 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds