Wall clock time and date at job start Tue Mar 31 2020 20:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.88493 * 2 1 4 4 C 1.55127 * 110.93815 * 124.08000 * 2 1 3 5 5 N 1.47429 * 104.72303 * 155.29123 * 4 2 1 6 6 C 1.34773 * 125.64650 * 155.81861 * 5 4 2 7 7 O 1.21274 * 120.00314 * 359.71146 * 6 5 4 8 8 C 1.50704 * 119.99393 * 179.71398 * 6 5 4 9 9 N 1.46503 * 109.46551 * 179.97438 * 8 6 5 10 10 C 1.34785 * 119.99835 * 179.97438 * 9 8 6 11 11 O 1.21701 * 119.99585 * 0.02562 * 10 9 8 12 12 C 1.46580 * 120.00095 * 180.02562 * 10 9 8 13 13 C 1.36650 * 125.45869 * 180.02562 * 12 10 9 14 14 C 1.37469 * 113.29739 * 180.02562 * 13 12 10 15 15 C 1.33813 * 115.09923 * 0.27518 * 14 13 12 16 16 S 1.70620 * 110.95710 * 359.57795 * 15 14 13 17 17 C 1.47023 * 108.69838 * 335.55072 * 5 4 2 18 18 C 1.54320 * 107.27342 * 1.28870 * 17 5 4 19 19 H 1.09008 * 110.71974 * 263.64930 * 18 17 5 20 20 N 1.46495 * 110.71876 * 140.55719 * 18 17 5 21 21 C 1.36937 * 120.00159 * 86.45327 * 20 18 17 22 22 H 1.07997 * 120.00172 * 0.02562 * 21 20 18 23 23 C 1.38821 * 120.00130 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99848 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00026 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47092 * 90.00244 * 25 23 21 27 27 H 1.48497 * 109.46941 * 210.00173 * 25 23 21 28 28 H 1.48502 * 109.47151 * 330.00617 * 25 23 21 29 29 H 1.08999 * 109.47333 * 183.87647 * 1 2 3 30 30 H 1.08998 * 109.47628 * 303.88041 * 1 2 3 31 31 H 1.08999 * 109.47398 * 63.87877 * 1 2 3 32 32 H 1.09004 * 110.49794 * 36.44653 * 4 2 1 33 33 H 1.09005 * 110.34172 * 274.05224 * 4 2 1 34 34 H 1.09004 * 109.47274 * 60.00591 * 8 6 5 35 35 H 1.08993 * 109.47587 * 299.99361 * 8 6 5 36 36 H 0.96991 * 120.00506 * 0.02562 * 9 8 6 37 37 H 1.08001 * 123.34765 * 0.05528 * 13 12 10 38 38 H 1.08002 * 122.44599 * 179.97438 * 14 13 12 39 39 H 1.07998 * 124.52215 * 179.72942 * 15 14 13 40 40 H 1.09001 * 109.87992 * 120.70574 * 17 5 4 41 41 H 1.09005 * 109.88303 * 241.71734 * 17 5 4 42 42 H 0.97001 * 119.99876 * 266.44946 * 20 18 17 43 43 H 0.96994 * 120.00100 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0183 0.0000 4 6 2.0843 -0.8119 1.2000 5 7 3.4280 -1.2422 0.7725 6 6 4.4489 -1.5604 1.5928 7 8 4.3025 -1.4990 2.7951 8 6 5.7725 -1.9923 1.0159 9 7 6.7093 -2.2797 2.1050 10 6 7.9635 -2.6863 1.8253 11 8 8.3179 -2.8142 0.6681 12 6 8.9007 -2.9743 2.9149 13 6 10.1929 -3.3910 2.7598 14 6 10.8476 -3.5878 3.9524 15 6 10.1172 -3.3468 5.0474 16 16 8.5422 -2.8396 4.6310 17 6 3.4678 -1.2730 -0.6969 18 6 2.0861 -0.8074 -1.2025 19 1 1.4482 -1.6631 -1.4242 20 7 2.2278 0.0503 -2.3817 21 6 2.3024 -0.5083 -3.6297 22 1 2.2563 -1.5811 -3.7448 23 6 2.4361 0.3045 -4.7471 24 7 2.4917 1.6120 -4.6069 25 14 2.5385 -0.4575 -6.4495 26 1 1.1722 -0.5889 -7.0161 27 1 3.3589 0.4106 -7.3318 28 1 3.1659 -1.8001 -6.3539 29 1 -0.3634 -1.0253 0.0695 30 1 -0.3634 0.5729 0.8531 31 1 -0.3634 0.4524 -0.9227 32 1 1.4536 -1.6785 1.3985 33 1 2.1523 -0.1802 2.0858 34 1 6.1749 -1.1941 0.3921 35 1 5.6306 -2.8887 0.4123 36 1 6.4268 -2.1780 3.0272 37 1 10.6539 -3.5496 1.7961 38 1 11.8748 -3.9175 4.0020 39 1 10.4773 -3.4563 6.0597 40 1 4.2425 -0.5981 -1.0610 41 1 3.6685 -2.2876 -1.0412 42 1 2.2687 1.0139 -2.2784 43 1 2.5847 2.1800 -5.3877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274290679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:38 Heat of formation + Delta-G solvation = -41.529215 kcal Electronic energy + Delta-G solvation = -25945.128562 eV Core-core repulsion = 22116.482284 eV Total energy + Delta-G solvation = -3828.646278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55440 -40.67141 -39.10317 -38.40039 -35.92604 -35.68519 -34.03596 -32.51744 -31.36631 -29.45290 -29.08740 -27.00901 -25.91887 -25.46934 -23.11687 -22.43230 -21.39933 -21.03679 -20.12355 -19.70452 -19.07525 -17.96304 -17.74629 -17.32524 -16.87497 -16.79161 -16.51336 -16.18937 -15.77267 -15.42163 -15.27832 -14.75002 -14.71682 -14.45476 -14.21947 -14.04389 -13.79776 -13.70722 -13.50436 -13.36867 -13.24836 -13.01890 -12.85659 -12.82429 -12.24505 -12.13274 -12.02093 -11.95436 -11.68106 -11.43863 -11.40951 -11.21187 -10.92755 -10.53498 -9.89668 -9.75611 -9.56988 -9.05588 -7.93765 -5.23132 -0.54226 0.45342 0.91554 1.31891 1.37403 1.49626 1.51362 1.52166 1.59244 2.06052 2.15454 2.57492 3.18213 3.38080 3.64041 3.73359 3.81395 3.87756 4.12431 4.12713 4.23968 4.24358 4.32967 4.35784 4.46496 4.53389 4.62934 4.67418 4.89077 4.89423 4.95852 5.00472 5.09702 5.14512 5.18006 5.20036 5.34499 5.34660 5.50001 5.57117 6.19832 6.26825 6.33273 6.82693 6.90877 7.35259 8.07080 8.30078 9.29035 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.002409 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.849636 B =11619.740340 C =13278.035601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 H 0.072 0.928 4 C 0.118 3.882 5 N -0.604 5.604 6 C 0.527 3.473 7 O -0.569 6.569 8 C 0.107 3.893 9 N -0.710 5.710 10 C 0.591 3.409 11 O -0.568 6.568 12 C -0.307 4.307 13 C -0.053 4.053 14 C -0.159 4.159 15 C -0.213 4.213 16 S 0.226 5.774 17 C 0.078 3.922 18 C 0.170 3.830 19 H 0.073 0.927 20 N -0.722 5.722 21 C -0.238 4.238 22 H 0.081 0.919 23 C -0.070 4.070 24 N -0.967 5.967 25 Si 0.966 3.034 26 H -0.288 1.288 27 H -0.301 1.301 28 H -0.269 1.269 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.413 0.587 37 H 0.150 0.850 38 H 0.173 0.827 39 H 0.203 0.797 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.375 0.625 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.843 -10.279 22.313 26.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 H 0.090 0.910 4 C -0.004 4.004 5 N -0.336 5.336 6 C 0.316 3.684 7 O -0.449 6.449 8 C -0.020 4.020 9 N -0.364 5.364 10 C 0.379 3.621 11 O -0.449 6.449 12 C -0.427 4.427 13 C -0.088 4.088 14 C -0.189 4.189 15 C -0.351 4.351 16 S 0.493 5.507 17 C -0.048 4.048 18 C 0.060 3.940 19 H 0.091 0.909 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.099 0.901 23 C -0.263 4.263 24 N -0.617 5.617 25 Si 0.796 3.204 26 H -0.215 1.215 27 H -0.228 1.228 28 H -0.194 1.194 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.252 0.748 37 H 0.168 0.832 38 H 0.190 0.810 39 H 0.220 0.780 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.208 0.792 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.747 -10.048 22.866 26.464 hybrid contribution 1.357 0.008 -1.880 2.319 sum 10.104 -10.041 20.986 25.364 Atomic orbital electron populations 1.21568 0.92253 1.02766 1.01991 1.22574 0.97584 0.98786 0.93414 0.90978 1.22430 0.81717 0.98888 0.97359 1.48421 1.12440 1.65037 1.07735 1.20114 0.85165 0.77176 0.85982 1.90648 1.83353 1.55899 1.15038 1.21037 0.86878 1.03784 0.90260 1.45529 1.11357 1.68762 1.10801 1.17276 0.80999 0.76021 0.87800 1.90832 1.77782 1.54525 1.21768 1.24456 1.00215 1.19861 0.98133 1.21062 0.91488 0.95050 1.01209 1.20276 1.03368 1.05324 0.89974 1.25835 0.98409 1.05286 1.05563 1.83177 1.11519 1.60844 0.95150 1.23157 1.02165 1.01827 0.77653 1.21449 0.92299 0.93864 0.86378 0.90917 1.42481 1.87050 1.05242 1.01279 1.19612 1.40481 0.92286 0.84626 0.90086 1.25488 1.03655 0.95794 1.01374 1.69798 1.58897 1.03494 1.29507 0.85247 0.77162 0.77568 0.80423 1.21523 1.22802 1.19381 0.91300 0.90890 0.93521 0.89421 0.90178 0.88180 0.87329 0.74835 0.83231 0.81012 0.78041 0.92160 0.90679 0.79212 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.31 71.98 0.67 -2.47 16 2 C -0.10 -2.93 3.26 -9.33 -0.03 -2.96 16 3 H 0.07 2.24 8.00 -2.39 -0.02 2.23 16 4 C 0.12 2.98 6.38 86.93 0.55 3.54 16 5 N -0.60 -17.04 3.32 -811.34 -2.70 -19.74 16 6 C 0.53 15.10 7.92 87.66 0.69 15.80 16 7 O -0.57 -18.08 15.92 -3.01 -0.05 -18.13 16 8 C 0.11 2.87 5.35 85.63 0.46 3.33 16 9 N -0.71 -18.32 5.52 -470.89 -2.60 -20.92 16 10 C 0.59 16.48 7.78 86.42 0.67 17.15 16 11 O -0.57 -19.79 16.84 -4.35 -0.07 -19.87 16 12 C -0.31 -6.69 6.45 24.08 0.16 -6.53 16 13 C -0.05 -1.00 10.01 21.72 0.22 -0.78 16 14 C -0.16 -1.99 10.15 21.08 0.21 -1.77 16 15 C -0.21 -2.24 10.92 66.81 0.73 -1.51 16 16 S 0.23 3.33 22.16 -56.49 -1.25 2.08 16 17 C 0.08 2.43 6.24 86.73 0.54 2.98 16 18 C 0.17 5.84 3.05 46.18 0.14 5.98 16 19 H 0.07 2.45 8.02 -2.38 -0.02 2.43 16 20 N -0.72 -32.86 5.18 -317.33 -1.64 -34.50 16 21 C -0.24 -12.20 9.98 84.04 0.84 -11.36 16 22 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 23 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 24 N -0.97 -56.92 13.06 21.65 0.28 -56.64 16 25 Si 0.97 44.56 29.55 68.60 2.03 46.59 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 29 H 0.07 1.48 8.07 -2.39 -0.02 1.46 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.94 7.99 -2.38 -0.02 1.92 16 33 H 0.08 1.99 8.03 -2.38 -0.02 1.97 16 34 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 35 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.41 9.82 6.55 -92.72 -0.61 9.22 16 37 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 38 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.20 0.77 8.06 -2.91 -0.02 0.74 16 40 H 0.06 2.13 8.03 -2.39 -0.02 2.11 16 41 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 42 H 0.38 18.77 7.71 -92.71 -0.72 18.06 16 43 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -67.92 378.61 0.04 -67.88 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -0.28 Total: 35.24 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 6.32 Total: 18.00 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -6.66 Total: -131.80 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.12 Total: -37.99 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.25 Total: 2.08 kcal Total: -67.92 0.04 -67.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274290679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.349 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds