Wall clock time and date at job start Tue Mar 31 2020 20:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47251 * 2 1 4 4 N 1.46498 * 109.47212 * 240.00004 * 2 1 3 5 5 C 1.34775 * 120.00293 * 84.72744 * 4 2 1 6 6 O 1.21281 * 119.99951 * 0.26984 * 5 4 2 7 7 C 1.50695 * 120.00062 * 180.27698 * 5 4 2 8 8 N 1.46503 * 109.47307 * 179.97438 * 7 5 4 9 9 C 1.34769 * 120.00425 * 179.97438 * 8 7 5 10 10 O 1.21640 * 119.99836 * 359.97438 * 9 8 7 11 11 C 1.47189 * 120.00133 * 180.02562 * 9 8 7 12 12 C 1.44431 * 123.46056 * 179.72690 * 11 9 8 13 13 C 1.32771 * 113.07988 * 179.80611 * 12 11 9 14 14 S 1.75497 * 110.57886 * 0.44501 * 13 12 11 15 15 C 1.36004 * 123.46164 * 0.02562 * 11 9 8 16 16 C 1.53003 * 109.46822 * 119.99887 * 2 1 3 17 17 C 1.53947 * 113.74189 * 281.81993 * 16 2 1 18 18 N 1.47815 * 86.03781 * 222.08698 * 17 16 2 19 19 C 1.36928 * 134.45806 * 204.64708 * 18 17 16 20 20 H 1.08002 * 120.00471 * 179.86268 * 19 18 17 21 21 C 1.38811 * 119.99984 * 359.86280 * 19 18 17 22 22 N 1.31617 * 119.99981 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00168 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47273 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47508 * 120.00218 * 23 21 19 26 26 H 1.48506 * 109.47148 * 240.00283 * 23 21 19 27 27 C 1.47581 * 91.04841 * 24.54942 * 18 17 16 28 28 H 1.09003 * 109.46745 * 59.99731 * 1 2 3 29 29 H 1.08991 * 109.47092 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47264 * 300.00247 * 1 2 3 31 31 H 0.96999 * 119.99641 * 265.00042 * 4 2 1 32 32 H 1.09002 * 109.47138 * 299.99836 * 7 5 4 33 33 H 1.09001 * 109.47311 * 59.99691 * 7 5 4 34 34 H 0.97006 * 119.99401 * 0.02562 * 8 7 5 35 35 H 1.07998 * 123.45691 * 0.02562 * 12 11 9 36 36 H 1.08001 * 124.70469 * 180.17813 * 13 12 11 37 37 H 1.08000 * 124.59426 * 0.02562 * 15 11 9 38 38 H 1.08998 * 112.94394 * 53.41048 * 16 2 1 39 39 H 1.08999 * 113.76687 * 336.35076 * 17 16 2 40 40 H 1.08994 * 113.76782 * 107.74406 * 17 16 2 41 41 H 0.97006 * 119.99925 * 179.97438 * 22 21 19 42 42 H 1.09004 * 113.77140 * 221.15362 * 27 18 17 43 43 H 1.09000 * 113.87306 * 89.77388 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1419 -0.0197 -2.3585 6 8 1.8534 1.1571 -2.4130 7 6 2.6383 -0.7316 -3.5904 8 7 2.6821 0.2082 -4.7133 9 6 3.0982 -0.2089 -5.9254 10 8 3.4379 -1.3657 -6.0870 11 6 3.1427 0.7356 -7.0535 12 6 3.5807 0.3709 -8.3806 13 6 3.5341 1.3817 -9.2402 14 16 2.9583 2.8384 -8.4487 15 6 2.7812 2.0427 -6.9518 16 6 2.0400 -0.7213 1.2493 17 6 1.9744 0.1330 2.5283 18 7 3.3098 -0.4178 2.8417 19 6 4.0193 -0.6144 3.9962 20 1 5.0065 -1.0505 3.9558 21 6 3.4698 -0.2531 5.2187 22 7 2.2665 0.2779 5.2680 23 14 4.4380 -0.5205 6.7936 24 1 5.7533 -1.1285 6.4689 25 1 4.6488 0.7832 7.4726 26 1 3.6812 -1.4296 7.6916 27 6 3.5701 -0.6730 1.4116 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.2490 -1.6317 -1.1525 32 1 3.6383 -1.1238 -3.4052 33 1 1.9645 -1.5538 -3.8312 34 1 2.4123 1.1310 -4.5842 35 1 3.9088 -0.6229 -8.6472 36 1 3.8159 1.3175 -10.2808 37 1 2.4301 2.5131 -6.0452 38 1 1.6175 -1.7192 1.3660 39 1 1.9751 1.2066 2.3401 40 1 1.1953 -0.1775 3.2245 41 1 1.8823 0.5301 6.1224 42 1 4.0627 -1.6258 1.2179 43 1 4.0408 0.1622 0.8931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276460693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:33 Heat of formation + Delta-G solvation = -10.652085 kcal Electronic energy + Delta-G solvation = -25593.444727 eV Core-core repulsion = 21766.137382 eV Total energy + Delta-G solvation = -3827.307345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.45451 -40.65855 -39.62162 -37.77908 -36.34922 -35.53396 -34.17289 -32.25107 -31.04896 -29.37620 -28.58187 -26.54594 -25.87951 -25.53956 -23.12962 -22.26393 -21.57799 -20.92789 -20.29917 -19.22776 -18.78377 -18.29334 -17.58471 -17.36700 -16.95517 -16.86239 -16.42058 -15.88463 -15.75763 -15.64866 -15.17599 -14.78273 -14.55714 -14.19102 -14.11499 -13.97978 -13.89859 -13.55807 -13.36569 -13.30017 -13.23235 -13.07676 -12.96949 -12.70563 -12.36596 -12.09990 -12.00072 -11.81682 -11.59741 -11.23257 -11.13003 -10.96463 -10.88438 -10.37284 -10.08522 -9.99559 -9.37236 -8.92386 -7.91739 -5.24795 -0.23507 0.61695 0.96727 0.98687 1.45008 1.45761 1.50493 1.55992 1.72807 2.28359 2.39861 2.46616 3.29049 3.38889 3.52532 3.78463 3.85387 3.95053 3.97610 4.25286 4.31264 4.34216 4.36657 4.45652 4.47130 4.58474 4.78068 4.83740 4.84457 4.87086 4.96226 5.06540 5.13736 5.18242 5.25306 5.28206 5.32201 5.48806 5.54760 5.65913 5.93985 6.37014 6.49692 6.91807 7.06119 7.14962 7.60192 8.55739 9.25450 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.025793 B = 0.001770 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.303180 B =15814.187441 C =15917.092617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.164 3.836 3 H 0.065 0.935 4 N -0.701 5.701 5 C 0.513 3.487 6 O -0.574 6.574 7 C 0.104 3.896 8 N -0.710 5.710 9 C 0.579 3.421 10 O -0.574 6.574 11 C -0.183 4.183 12 C -0.108 4.108 13 C -0.232 4.232 14 S 0.239 5.761 15 C -0.212 4.212 16 C -0.109 4.109 17 C 0.170 3.830 18 N -0.645 5.645 19 C -0.234 4.234 20 H 0.083 0.917 21 C -0.069 4.069 22 N -0.953 5.953 23 Si 0.978 3.022 24 H -0.265 1.265 25 H -0.294 1.294 26 H -0.290 1.290 27 C 0.126 3.874 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.418 0.582 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.414 0.586 35 H 0.149 0.851 36 H 0.196 0.804 37 H 0.183 0.817 38 H 0.106 0.894 39 H 0.012 0.988 40 H 0.046 0.954 41 H 0.249 0.751 42 H 0.062 0.938 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.862 1.502 -30.014 30.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.058 3.942 3 H 0.083 0.917 4 N -0.352 5.352 5 C 0.300 3.700 6 O -0.454 6.454 7 C -0.023 4.023 8 N -0.364 5.364 9 C 0.367 3.633 10 O -0.455 6.455 11 C -0.202 4.202 12 C -0.137 4.137 13 C -0.367 4.367 14 S 0.505 5.495 15 C -0.351 4.351 16 C -0.129 4.129 17 C 0.044 3.956 18 N -0.372 5.372 19 C -0.363 4.363 20 H 0.101 0.899 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.806 3.194 24 H -0.190 1.190 25 H -0.222 1.222 26 H -0.217 1.217 27 C 0.002 3.998 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.255 0.745 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.252 0.748 35 H 0.167 0.833 36 H 0.213 0.787 37 H 0.200 0.800 38 H 0.124 0.876 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.002 2.985 -30.297 30.509 hybrid contribution 0.658 -1.285 2.115 2.560 sum -1.344 1.700 -28.182 28.265 Atomic orbital electron populations 1.22046 0.93987 1.03024 1.01983 1.20777 0.94711 0.95987 0.82716 0.91698 1.45819 1.65997 1.14988 1.08409 1.20676 0.77129 0.86973 0.85229 1.90681 1.52049 1.17355 1.85354 1.21146 1.04790 0.92701 0.83659 1.45548 1.67300 1.15183 1.08385 1.17859 0.76192 0.86993 0.82299 1.90774 1.50365 1.19887 1.84493 1.20230 1.10850 0.93817 0.95292 1.21184 1.00931 1.01208 0.90350 1.25893 1.09045 0.96309 1.05449 1.83021 1.59085 1.10742 0.96687 1.26033 1.04749 0.97935 1.06392 1.23457 0.95936 1.00414 0.93057 1.22143 0.88146 0.93764 0.91557 1.46429 1.17366 1.72113 1.01243 1.19464 0.98754 1.33850 0.84216 0.89934 1.25626 0.98179 1.01670 1.00676 1.69999 1.16867 1.48837 1.24551 0.85020 0.78144 0.76846 0.79377 1.18974 1.22164 1.21677 1.22696 0.94882 0.98510 0.83741 0.92638 0.90778 0.91937 0.74493 0.87017 0.86482 0.74753 0.83315 0.78680 0.79969 0.87598 0.97001 0.93581 0.94240 0.92017 0.94863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.44 71.98 0.68 -3.07 16 2 C 0.16 4.45 2.29 44.99 0.10 4.55 16 3 H 0.06 2.13 7.49 -2.38 -0.02 2.12 16 4 N -0.70 -14.45 4.95 -442.53 -2.19 -16.64 16 5 C 0.51 11.31 7.86 87.66 0.69 12.00 16 6 O -0.57 -16.58 15.33 -3.03 -0.05 -16.63 16 7 C 0.10 1.85 6.15 85.63 0.53 2.37 16 8 N -0.71 -14.00 5.50 -470.33 -2.59 -16.58 16 9 C 0.58 13.15 7.79 86.60 0.67 13.83 16 10 O -0.57 -16.49 16.80 -4.16 -0.07 -16.56 16 11 C -0.18 -3.39 5.98 -19.87 -0.12 -3.51 16 12 C -0.11 -1.75 10.10 22.67 0.23 -1.52 16 13 C -0.23 -2.45 11.12 66.64 0.74 -1.71 16 14 S 0.24 2.23 23.02 -56.49 -1.30 0.93 16 15 C -0.21 -2.90 10.38 67.30 0.70 -2.20 16 16 C -0.11 -3.58 3.35 -10.13 -0.03 -3.61 16 17 C 0.17 7.83 6.98 86.44 0.60 8.43 16 18 N -0.65 -32.69 3.70 -716.06 -2.65 -35.34 16 19 C -0.23 -13.16 10.70 84.03 0.90 -12.26 16 20 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 21 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 22 N -0.95 -57.54 11.39 21.65 0.25 -57.30 16 23 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 27 C 0.13 4.78 8.37 86.49 0.72 5.50 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.67 8.09 -2.39 -0.02 1.65 16 31 H 0.42 6.25 8.60 -92.71 -0.80 5.45 16 32 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.12 1.74 8.14 -2.39 -0.02 1.73 16 34 H 0.41 7.70 5.93 -92.70 -0.55 7.15 16 35 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 37 H 0.18 1.97 7.01 -2.91 -0.02 1.95 16 38 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.01 0.59 8.03 -2.39 -0.02 0.57 16 40 H 0.05 2.38 7.16 -2.39 -0.02 2.36 16 41 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 42 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.03 1.27 8.10 -2.39 -0.02 1.25 16 Total: -1.00 -76.14 379.10 0.02 -76.12 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -0.30 Total: 18.81 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 6.88 Total: 15.34 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -7.18 Total: -125.85 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.12 Total: -33.19 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.30 Total: 0.93 kcal Total: -76.14 0.02 -76.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276460693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.466 kcal (2) G-P(sol) polarization free energy of solvation -76.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds