Wall clock time and date at job start Tue Mar 31 2020 20:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.29061 * 2 1 4 4 C 1.54000 * 110.32713 * 122.13878 * 2 1 3 5 5 N 1.47484 * 107.08409 * 120.19590 * 4 2 1 6 6 C 1.34781 * 127.03734 * 154.28456 * 5 4 2 7 7 O 1.21679 * 120.00399 * 176.52384 * 6 5 4 8 8 C 1.46735 * 119.99448 * 356.53106 * 6 5 4 9 9 C 1.34880 * 125.05164 * 186.57727 * 8 6 5 10 10 C 1.38947 * 113.65006 * 179.80147 * 9 8 6 11 11 C 1.47327 * 122.95966 * 180.21893 * 10 9 8 12 12 N 1.34779 * 120.00060 * 180.31449 * 11 10 9 13 13 O 1.21621 * 120.00287 * 0.31211 * 11 10 9 14 14 C 1.36658 * 114.07439 * 0.48420 * 10 9 8 15 15 S 1.70591 * 110.53602 * 359.73654 * 14 10 9 16 16 C 1.48121 * 105.93515 * 334.55265 * 5 4 2 17 17 C 1.54623 * 110.32453 * 237.75818 * 2 1 3 18 18 H 1.08999 * 110.73916 * 144.43870 * 17 2 1 19 19 C 1.53007 * 110.73606 * 21.29401 * 17 2 1 20 20 N 1.46499 * 109.46826 * 174.99843 * 19 17 2 21 21 C 1.36933 * 120.00230 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99717 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00337 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99857 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00100 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47115 * 89.99616 * 25 23 21 27 27 H 1.48500 * 109.46969 * 209.99840 * 25 23 21 28 28 H 1.48510 * 109.47141 * 329.99833 * 25 23 21 29 29 H 1.09009 * 109.47295 * 299.31533 * 1 2 3 30 30 H 1.08998 * 109.47830 * 59.31613 * 1 2 3 31 31 H 1.09002 * 109.47449 * 179.31922 * 1 2 3 32 32 H 1.08998 * 109.91402 * 0.83606 * 4 2 1 33 33 H 1.09005 * 110.07272 * 239.64405 * 4 2 1 34 34 H 1.07992 * 123.17811 * 359.95800 * 9 8 6 35 35 H 0.96996 * 119.99589 * 359.97438 * 12 11 10 36 36 H 0.97002 * 120.00022 * 180.02562 * 12 11 10 37 37 H 1.08006 * 124.72926 * 179.73362 * 14 10 9 38 38 H 1.08992 * 110.66342 * 157.73150 * 16 5 4 39 39 H 1.09003 * 110.65693 * 280.85189 * 16 5 4 40 40 H 1.08995 * 109.47205 * 294.99699 * 19 17 2 41 41 H 1.08993 * 109.47106 * 55.00110 * 19 17 2 42 42 H 0.97003 * 120.00214 * 0.02562 * 20 19 17 43 43 H 0.96995 * 119.99641 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0649 -0.7682 1.2228 5 7 2.8803 -1.8851 0.7101 6 6 3.8951 -2.5067 1.3428 7 8 4.4429 -3.4609 0.8230 8 6 4.3392 -2.0330 2.6587 9 6 5.4181 -2.4936 3.3243 10 6 5.6227 -1.8740 4.5510 11 6 6.7432 -2.2156 5.4445 12 7 6.8813 -1.5804 6.6252 13 8 7.5435 -3.0707 5.1168 14 6 4.6897 -0.9238 4.8581 15 16 3.5404 -0.7867 3.6050 16 6 2.3603 -2.1796 -0.6452 17 6 2.0670 -0.7735 -1.2264 18 1 2.9787 -0.3116 -1.6052 19 6 1.0050 -0.8521 -2.3250 20 7 1.5797 -1.4835 -3.5155 21 6 0.8106 -1.6629 -4.6341 22 1 -0.2198 -1.3394 -4.6386 23 6 1.3550 -2.2617 -5.7620 24 7 2.6106 -2.6564 -5.7563 25 14 0.3060 -2.5058 -7.2882 26 1 0.4260 -1.3149 -8.1670 27 1 0.7713 -3.7107 -8.0210 28 1 -1.1132 -2.6860 -6.8899 29 1 -0.3634 0.5032 0.8961 30 1 -0.3635 0.5244 -0.8837 31 1 -0.3634 -1.0276 -0.0122 32 1 1.2330 -1.1554 1.8111 33 1 2.6801 -0.1111 1.8377 34 1 6.0635 -3.2690 2.9390 35 1 6.2433 -0.8982 6.8864 36 1 7.6193 -1.8051 7.2133 37 1 4.6813 -0.3410 5.7674 38 1 3.1132 -2.6933 -1.2428 39 1 1.4458 -2.7698 -0.5863 40 1 0.1602 -1.4435 -1.9720 41 1 0.6656 0.1531 -2.5748 42 1 2.5048 -1.7751 -3.5111 43 1 2.9910 -3.0744 -6.5446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279193381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:40 Heat of formation + Delta-G solvation = -22.972628 kcal Electronic energy + Delta-G solvation = -26202.488535 eV Core-core repulsion = 22374.646931 eV Total energy + Delta-G solvation = -3827.841604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41666 -40.02929 -38.28710 -36.91698 -34.74114 -34.15360 -33.00790 -31.25622 -30.51290 -28.92028 -26.89892 -25.89703 -25.43445 -23.75936 -22.51972 -21.94961 -20.19042 -19.49017 -19.06716 -18.53537 -17.50556 -17.31775 -16.84947 -16.32107 -15.90668 -15.49887 -15.25497 -14.95698 -14.76951 -14.49783 -14.01793 -13.77014 -13.54109 -13.31179 -13.13871 -13.06025 -12.84491 -12.49181 -12.36632 -12.23654 -12.04571 -11.86121 -11.35306 -11.00530 -10.85467 -10.60686 -10.47301 -10.37719 -10.29132 -10.13996 -10.10160 -9.96791 -9.68293 -9.38187 -9.03563 -8.87452 -8.70574 -6.92314 -5.75067 -3.04739 0.00878 0.99034 1.34998 1.39178 2.74886 2.85158 3.15218 3.15986 3.44494 3.49211 3.51651 4.19998 4.40711 4.42791 4.58583 4.60281 4.71205 4.80728 4.81576 5.14706 5.28500 5.34459 5.37202 5.47053 5.58363 5.61103 5.72260 5.75673 5.85077 5.90361 6.01026 6.08724 6.12216 6.23033 6.33990 6.34913 6.42748 6.67781 6.80566 6.87134 7.42254 7.70038 7.84697 8.02729 8.43016 9.54162 10.11266 10.45063 11.47501 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022636 B = 0.002358 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.694346 B =11869.135914 C =12913.945477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.086 0.914 4 C 0.097 3.903 5 N -0.618 5.618 6 C 0.603 3.397 7 O -0.519 6.519 8 C -0.259 4.259 9 C -0.015 4.015 10 C -0.163 4.163 11 C 0.582 3.418 12 N -0.851 5.851 13 O -0.534 6.534 14 C -0.226 4.226 15 S 0.263 5.737 16 C 0.119 3.881 17 C -0.104 4.104 18 H 0.085 0.915 19 C 0.165 3.835 20 N -0.734 5.734 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.165 0.835 35 H 0.399 0.601 36 H 0.406 0.594 37 H 0.172 0.828 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.384 0.616 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 9.860 28.438 30.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 H 0.104 0.896 4 C -0.028 4.028 5 N -0.352 5.352 6 C 0.390 3.610 7 O -0.396 6.396 8 C -0.379 4.379 9 C -0.046 4.046 10 C -0.180 4.180 11 C 0.366 3.634 12 N -0.415 5.415 13 O -0.410 6.410 14 C -0.365 4.365 15 S 0.533 5.467 16 C -0.003 4.003 17 C -0.124 4.124 18 H 0.103 0.897 19 C 0.037 3.963 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.182 0.818 35 H 0.228 0.772 36 H 0.237 0.763 37 H 0.190 0.810 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.218 0.782 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.291 9.598 27.509 29.137 hybrid contribution 1.101 -0.673 -0.017 1.291 sum 0.810 8.924 27.492 28.915 Atomic orbital electron populations 1.21925 0.93634 1.02680 1.02143 1.22004 0.96863 0.99311 0.93176 0.89597 1.22470 0.94620 0.88495 0.97202 1.48708 1.32660 1.34778 1.19040 1.16494 0.78999 0.82569 0.82901 1.90893 1.55647 1.26727 1.66297 1.24202 1.04560 1.07485 1.01671 1.20332 0.95046 0.97907 0.91319 1.19002 0.99359 1.01851 0.97824 1.17668 0.84006 0.80708 0.81044 1.43658 1.33509 1.43325 1.21005 1.90874 1.43797 1.32098 1.74275 1.26545 1.01605 1.02384 1.05980 1.83459 1.25083 1.32831 1.05375 1.22629 0.99847 0.97431 0.80352 1.22553 1.00612 0.94436 0.94767 0.89690 1.20711 0.93213 0.96212 0.86133 1.42406 1.13078 1.72083 1.10270 1.19183 0.94406 1.32853 0.90840 0.91178 1.24760 0.96298 1.01528 0.98344 1.69660 1.12477 1.46299 1.29462 0.86199 0.79352 0.77282 0.83383 1.21759 1.21775 1.20773 0.92855 0.91063 0.91962 0.90409 0.91259 0.81807 0.77209 0.76267 0.81010 0.88927 0.90291 0.95639 0.95768 0.78242 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 7.78 37.16 0.29 -1.11 16 2 C -0.09 -0.99 3.53 -89.25 -0.32 -1.31 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.10 0.95 5.42 -2.98 -0.02 0.94 16 5 N -0.62 -8.55 3.29 -171.28 -0.56 -9.11 16 6 C 0.60 9.35 7.85 -12.83 -0.10 9.25 16 7 O -0.52 -10.24 17.04 5.21 0.09 -10.15 16 8 C -0.26 -3.12 6.31 -37.34 -0.24 -3.36 16 9 C -0.01 -0.18 9.48 -40.51 -0.38 -0.57 16 10 C -0.16 -1.56 5.82 -106.51 -0.62 -2.18 16 11 C 0.58 5.87 8.06 -12.56 -0.10 5.76 16 12 N -0.85 -4.31 8.84 30.41 0.27 -4.04 16 13 O -0.53 -7.82 17.53 5.26 0.09 -7.73 16 14 C -0.23 -1.40 10.41 30.16 0.31 -1.09 16 15 S 0.26 1.87 18.59 -107.50 -2.00 -0.13 16 16 C 0.12 1.89 6.44 -2.13 -0.01 1.87 16 17 C -0.10 -1.55 3.01 -88.74 -0.27 -1.82 16 18 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 19 C 0.17 3.04 4.44 -4.04 -0.02 3.02 16 20 N -0.73 -18.05 5.52 -59.91 -0.33 -18.38 16 21 C -0.24 -6.65 9.99 -15.06 -0.15 -6.81 16 22 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 25 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.07 0.75 6.76 -51.93 -0.35 0.39 16 31 H 0.06 0.64 7.51 -51.93 -0.39 0.25 16 32 H 0.08 0.65 7.68 -51.93 -0.40 0.25 16 33 H 0.07 0.56 4.85 -28.35 -0.14 0.42 16 34 H 0.16 2.30 7.96 -52.49 -0.42 1.88 16 35 H 0.40 0.72 7.29 -40.82 -0.30 0.42 16 36 H 0.41 1.59 8.93 -40.82 -0.36 1.22 16 37 H 0.17 0.36 6.99 -52.48 -0.37 0.00 16 38 H 0.09 1.75 7.88 -51.93 -0.41 1.35 16 39 H 0.08 1.25 7.94 -51.93 -0.41 0.84 16 40 H 0.03 0.47 6.80 -51.93 -0.35 0.11 16 41 H 0.02 0.45 7.37 -51.93 -0.38 0.07 16 42 H 0.38 10.12 7.67 -40.82 -0.31 9.80 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -36.81 364.95 -8.36 -45.17 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.41 Total: 7.01 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.71 Total: 2.13 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.10 Total: -59.18 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.18 Total: -17.88 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.00 Total: -0.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.81 -8.36 -45.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279193381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.200 kcal (2) G-P(sol) polarization free energy of solvation -36.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds