Wall clock time and date at job start Tue Mar 31 2020 20:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.30656 * 2 1 4 4 C 1.54388 * 110.34570 * 122.28727 * 2 1 3 5 5 N 1.48147 * 104.61833 * 142.73396 * 4 2 1 6 6 C 1.34777 * 127.83721 * 140.40875 * 5 4 2 7 7 O 1.21677 * 119.99984 * 353.87739 * 6 5 4 8 8 C 1.46732 * 120.00056 * 173.87407 * 6 5 4 9 9 C 1.34878 * 125.05579 * 173.00531 * 8 6 5 10 10 C 1.38939 * 113.65203 * 179.97438 * 9 8 6 11 11 C 1.47332 * 122.95894 * 179.97438 * 10 9 8 12 12 N 1.34774 * 120.00201 * 180.02562 * 11 10 9 13 13 O 1.21622 * 120.00303 * 0.02562 * 11 10 9 14 14 C 1.36657 * 114.07685 * 0.02562 * 10 9 8 15 15 S 1.70597 * 110.53485 * 359.72396 * 14 10 9 16 16 C 1.48420 * 104.33755 * 320.39272 * 5 4 2 17 17 C 1.54285 * 110.33952 * 237.82641 * 2 1 3 18 18 H 1.08999 * 110.34468 * 0.10075 * 17 2 1 19 19 C 1.53006 * 110.34440 * 122.25934 * 17 2 1 20 20 N 1.46498 * 109.47163 * 183.52254 * 19 17 2 21 21 C 1.36937 * 119.99596 * 180.27493 * 20 19 17 22 22 H 1.07994 * 120.00547 * 359.72339 * 21 20 19 23 23 C 1.38814 * 119.99426 * 179.72837 * 21 20 19 24 24 N 1.31614 * 120.00659 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99736 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46929 * 59.99718 * 25 23 21 27 27 H 1.48498 * 109.47010 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47123 * 300.00125 * 25 23 21 29 29 H 1.08996 * 109.46929 * 182.17502 * 1 2 3 30 30 H 1.09003 * 109.47091 * 302.17536 * 1 2 3 31 31 H 1.08999 * 109.47145 * 62.17486 * 1 2 3 32 32 H 1.08994 * 110.40733 * 261.52581 * 4 2 1 33 33 H 1.09008 * 110.40458 * 23.83664 * 4 2 1 34 34 H 1.07998 * 123.17089 * 0.02562 * 9 8 6 35 35 H 0.97006 * 119.99854 * 0.02562 * 12 11 10 36 36 H 0.96996 * 120.00553 * 179.97438 * 12 11 10 37 37 H 1.08002 * 124.73366 * 179.97438 * 14 10 9 38 38 H 1.09002 * 110.44570 * 280.86673 * 16 5 4 39 39 H 1.09003 * 110.49110 * 158.35722 * 16 5 4 40 40 H 1.09004 * 109.47113 * 63.52154 * 19 17 2 41 41 H 1.08995 * 109.46679 * 303.52653 * 19 17 2 42 42 H 0.97000 * 119.99810 * 0.02562 * 20 19 17 43 43 H 0.96997 * 120.00420 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0668 -0.7732 1.2237 5 7 3.2665 -1.4824 0.7211 6 6 4.4425 -1.6677 1.3528 7 8 4.6478 -1.1319 2.4258 8 6 5.4754 -2.5155 0.7465 9 6 6.7304 -2.6642 1.2176 10 6 7.5123 -3.5259 0.4584 11 6 8.9146 -3.8357 0.7873 12 7 9.6188 -4.6806 0.0084 13 8 9.4369 -3.3290 1.7618 14 6 6.8663 -4.0600 -0.6210 15 16 5.2590 -3.4935 -0.6969 16 6 2.8795 -1.9431 -0.6357 17 6 2.0663 -0.7703 -1.2245 18 1 1.2397 -1.1472 -1.8269 19 6 2.9692 0.1327 -2.0674 20 7 3.3995 -0.5898 -3.2670 21 6 4.2242 0.0198 -4.1744 22 1 4.5538 1.0346 -4.0080 23 6 4.6364 -0.6669 -5.3082 24 7 4.2351 -1.9038 -5.5109 25 14 5.7610 0.1649 -6.5464 26 1 7.0303 0.5523 -5.8801 27 1 6.0530 -0.7744 -7.6589 28 1 5.0940 1.3778 -7.0842 29 1 -0.3633 -1.0269 0.0390 30 1 -0.3633 0.5473 0.8699 31 1 -0.3633 0.4797 -0.9088 32 1 2.3401 -0.0815 2.0205 33 1 1.3227 -1.4862 1.5791 34 1 7.0930 -2.1616 2.1021 35 1 9.2023 -5.0845 -0.7691 36 1 10.5421 -4.8843 0.2247 37 1 7.3101 -4.7481 -1.3252 38 1 2.2625 -2.8394 -0.5719 39 1 3.7657 -2.1331 -1.2413 40 1 3.8434 0.4198 -1.4830 41 1 2.4180 1.0265 -2.3596 42 1 3.1030 -1.5012 -3.4166 43 1 4.5235 -2.3837 -6.3030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279193383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:45 Heat of formation + Delta-G solvation = -26.487644 kcal Electronic energy + Delta-G solvation = -27017.739977 eV Core-core repulsion = 23189.745951 eV Total energy + Delta-G solvation = -3827.994027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.21634 -39.77710 -38.08953 -36.62337 -34.60713 -33.85809 -33.03487 -31.53480 -29.99764 -29.05049 -26.74636 -25.86368 -25.25734 -23.57816 -22.67240 -21.13961 -19.96728 -19.90649 -19.03722 -18.29390 -17.29688 -17.04736 -16.92861 -15.99812 -15.84927 -15.28152 -14.93660 -14.82642 -14.52787 -14.16010 -14.04005 -13.58094 -13.45605 -13.22139 -12.96099 -12.82484 -12.79732 -12.67501 -12.50280 -12.16183 -11.61931 -11.56381 -11.20849 -11.10628 -10.89080 -10.69650 -10.57295 -10.42257 -10.09379 -10.06494 -9.95772 -9.85614 -9.72395 -9.06540 -8.95093 -8.67512 -8.53512 -7.01293 -5.84950 -3.13257 0.38649 1.41116 1.64826 1.81197 2.85713 3.06097 3.38968 3.41009 3.43330 3.44961 3.45322 4.36229 4.51458 4.64875 4.72876 4.86857 4.88269 4.94305 5.17534 5.23766 5.32252 5.45453 5.49558 5.56008 5.65450 5.69023 5.70865 5.75982 5.87853 5.96754 6.05159 6.09805 6.14979 6.20844 6.25001 6.38871 6.62199 6.65410 6.78273 7.16891 7.49606 7.64243 8.12133 8.13842 8.33888 9.45893 10.00520 10.36207 11.37606 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.007425 B = 0.005160 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.095903 B = 5425.236727 C = 8449.197463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.085 0.915 4 C 0.113 3.887 5 N -0.619 5.619 6 C 0.615 3.385 7 O -0.534 6.534 8 C -0.278 4.278 9 C -0.013 4.013 10 C -0.174 4.174 11 C 0.586 3.414 12 N -0.851 5.851 13 O -0.541 6.541 14 C -0.221 4.221 15 S 0.310 5.690 16 C 0.093 3.907 17 C -0.101 4.101 18 H 0.093 0.907 19 C 0.159 3.841 20 N -0.731 5.731 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.934 5.934 25 Si 0.903 3.097 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.160 0.840 35 H 0.401 0.599 36 H 0.404 0.596 37 H 0.173 0.827 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.020 0.980 41 H 0.025 0.975 42 H 0.383 0.617 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 -7.222 10.024 12.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.103 0.897 4 C -0.009 4.009 5 N -0.353 5.353 6 C 0.404 3.596 7 O -0.413 6.413 8 C -0.399 4.399 9 C -0.044 4.044 10 C -0.191 4.191 11 C 0.370 3.630 12 N -0.415 5.415 13 O -0.419 6.419 14 C -0.361 4.361 15 S 0.580 5.420 16 C -0.031 4.031 17 C -0.120 4.120 18 H 0.111 0.889 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.582 5.582 25 Si 0.734 3.266 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.177 0.823 35 H 0.230 0.770 36 H 0.235 0.765 37 H 0.190 0.810 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.038 0.962 41 H 0.042 0.958 42 H 0.217 0.783 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.069 -6.694 10.225 12.601 hybrid contribution 2.121 -0.003 -0.523 2.184 sum -0.948 -6.698 9.702 11.828 Atomic orbital electron populations 1.21809 0.93867 1.01986 1.02132 1.22135 0.96091 1.00156 0.93776 0.89652 1.22424 0.85690 0.95672 0.97130 1.48822 1.12760 1.55940 1.17735 1.16444 0.79518 0.79793 0.83808 1.90813 1.78808 1.49833 1.21824 1.24119 0.99945 1.11047 1.04764 1.20197 0.90407 0.94612 0.99214 1.18904 0.95911 1.05390 0.98942 1.17662 0.85285 0.77973 0.82060 1.43663 1.16888 1.49427 1.31510 1.90833 1.71212 1.51967 1.27909 1.26588 1.03776 1.04526 1.01236 1.83876 1.05278 1.33392 1.19417 1.22895 1.00240 0.97691 0.82308 1.22393 0.98534 0.95249 0.95840 0.88897 1.20732 0.94540 0.93586 0.88027 1.42340 1.58514 1.15461 1.21265 1.19157 1.20819 0.97220 0.99678 0.91328 1.24666 1.01028 0.96333 0.98561 1.69623 1.49294 1.10303 1.29029 0.86332 0.80778 0.78395 0.81095 1.21314 1.21659 1.21232 0.92413 0.92567 0.91846 0.89841 0.90855 0.82267 0.77037 0.76468 0.80966 0.90462 0.88572 0.96194 0.95759 0.78348 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.92 37.16 0.33 -0.95 16 2 C -0.10 -1.18 3.31 -89.22 -0.30 -1.48 16 3 H 0.09 1.05 7.71 -51.93 -0.40 0.65 16 4 C 0.11 1.37 6.62 -2.41 -0.02 1.35 16 5 N -0.62 -9.02 3.32 -170.60 -0.57 -9.58 16 6 C 0.62 10.35 7.86 -12.83 -0.10 10.25 16 7 O -0.53 -10.37 17.06 5.21 0.09 -10.28 16 8 C -0.28 -4.33 6.29 -37.34 -0.23 -4.57 16 9 C -0.01 -0.20 9.48 -40.51 -0.38 -0.58 16 10 C -0.17 -2.40 5.82 -106.51 -0.62 -3.02 16 11 C 0.59 8.01 8.06 -12.56 -0.10 7.90 16 12 N -0.85 -7.58 8.84 30.41 0.27 -7.31 16 13 O -0.54 -9.46 17.53 5.26 0.09 -9.37 16 14 C -0.22 -2.61 10.41 30.16 0.31 -2.30 16 15 S 0.31 4.10 18.75 -107.50 -2.02 2.08 16 16 C 0.09 1.28 5.32 -2.26 -0.01 1.27 16 17 C -0.10 -1.42 2.76 -89.22 -0.25 -1.66 16 18 H 0.09 1.26 7.71 -51.93 -0.40 0.86 16 19 C 0.16 2.96 5.39 -4.04 -0.02 2.94 16 20 N -0.73 -16.84 5.16 -59.91 -0.31 -17.15 16 21 C -0.24 -6.28 9.99 -15.06 -0.15 -6.43 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 24 N -0.93 -26.06 13.06 55.49 0.72 -25.34 16 25 Si 0.90 21.56 29.55 -169.99 -5.02 16.53 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.06 7.84 -51.93 -0.41 0.65 16 33 H 0.07 0.74 7.83 -51.92 -0.41 0.34 16 34 H 0.16 2.61 7.96 -52.49 -0.42 2.20 16 35 H 0.40 2.50 7.29 -40.82 -0.30 2.20 16 36 H 0.40 2.94 8.93 -40.82 -0.36 2.58 16 37 H 0.17 1.41 6.99 -52.49 -0.37 1.05 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.10 1.52 4.09 -29.11 -0.12 1.40 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.38 9.01 7.49 -40.82 -0.31 8.70 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -34.07 369.08 -8.38 -42.45 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.57 Total: 10.04 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -1.63 Total: 2.36 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.12 Total: -59.38 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.18 Total: -19.64 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -2.02 Total: 2.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.07 -8.38 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279193383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.959 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds