Wall clock time and date at job start Tue Mar 31 2020 20:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.30656 * 2 1 4 4 C 1.54388 * 110.34570 * 122.28727 * 2 1 3 5 5 N 1.48147 * 104.61833 * 142.73396 * 4 2 1 6 6 C 1.34777 * 127.83721 * 140.40875 * 5 4 2 7 7 O 1.21677 * 119.99984 * 353.87739 * 6 5 4 8 8 C 1.46732 * 120.00056 * 173.87407 * 6 5 4 9 9 C 1.34878 * 125.05579 * 173.00531 * 8 6 5 10 10 C 1.38939 * 113.65203 * 179.97438 * 9 8 6 11 11 C 1.47332 * 122.95894 * 179.97438 * 10 9 8 12 12 N 1.34774 * 120.00201 * 180.02562 * 11 10 9 13 13 O 1.21622 * 120.00303 * 0.02562 * 11 10 9 14 14 C 1.36657 * 114.07685 * 0.02562 * 10 9 8 15 15 S 1.70597 * 110.53485 * 359.72396 * 14 10 9 16 16 C 1.48420 * 104.33755 * 320.39272 * 5 4 2 17 17 C 1.54285 * 110.33952 * 237.82641 * 2 1 3 18 18 H 1.08999 * 110.34468 * 0.10075 * 17 2 1 19 19 C 1.53006 * 110.34440 * 122.25934 * 17 2 1 20 20 N 1.46498 * 109.47163 * 183.52254 * 19 17 2 21 21 C 1.36937 * 119.99596 * 180.27493 * 20 19 17 22 22 H 1.07994 * 120.00547 * 359.72339 * 21 20 19 23 23 C 1.38814 * 119.99426 * 179.72837 * 21 20 19 24 24 N 1.31614 * 120.00659 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99736 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46929 * 59.99718 * 25 23 21 27 27 H 1.48498 * 109.47010 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47123 * 300.00125 * 25 23 21 29 29 H 1.08996 * 109.46929 * 182.17502 * 1 2 3 30 30 H 1.09003 * 109.47091 * 302.17536 * 1 2 3 31 31 H 1.08999 * 109.47145 * 62.17486 * 1 2 3 32 32 H 1.08994 * 110.40733 * 261.52581 * 4 2 1 33 33 H 1.09008 * 110.40458 * 23.83664 * 4 2 1 34 34 H 1.07998 * 123.17089 * 0.02562 * 9 8 6 35 35 H 0.97006 * 119.99854 * 0.02562 * 12 11 10 36 36 H 0.96996 * 120.00553 * 179.97438 * 12 11 10 37 37 H 1.08002 * 124.73366 * 179.97438 * 14 10 9 38 38 H 1.09002 * 110.44570 * 280.86673 * 16 5 4 39 39 H 1.09003 * 110.49110 * 158.35722 * 16 5 4 40 40 H 1.09004 * 109.47113 * 63.52154 * 19 17 2 41 41 H 1.08995 * 109.46679 * 303.52653 * 19 17 2 42 42 H 0.97000 * 119.99810 * 0.02562 * 20 19 17 43 43 H 0.96997 * 120.00420 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0668 -0.7732 1.2237 5 7 3.2665 -1.4824 0.7211 6 6 4.4425 -1.6677 1.3528 7 8 4.6478 -1.1319 2.4258 8 6 5.4754 -2.5155 0.7465 9 6 6.7304 -2.6642 1.2176 10 6 7.5123 -3.5259 0.4584 11 6 8.9146 -3.8357 0.7873 12 7 9.6188 -4.6806 0.0084 13 8 9.4369 -3.3290 1.7618 14 6 6.8663 -4.0600 -0.6210 15 16 5.2590 -3.4935 -0.6969 16 6 2.8795 -1.9431 -0.6357 17 6 2.0663 -0.7703 -1.2245 18 1 1.2397 -1.1472 -1.8269 19 6 2.9692 0.1327 -2.0674 20 7 3.3995 -0.5898 -3.2670 21 6 4.2242 0.0198 -4.1744 22 1 4.5538 1.0346 -4.0080 23 6 4.6364 -0.6669 -5.3082 24 7 4.2351 -1.9038 -5.5109 25 14 5.7610 0.1649 -6.5464 26 1 7.0303 0.5523 -5.8801 27 1 6.0530 -0.7744 -7.6589 28 1 5.0940 1.3778 -7.0842 29 1 -0.3633 -1.0269 0.0390 30 1 -0.3633 0.5473 0.8699 31 1 -0.3633 0.4797 -0.9088 32 1 2.3401 -0.0815 2.0205 33 1 1.3227 -1.4862 1.5791 34 1 7.0930 -2.1616 2.1021 35 1 9.2023 -5.0845 -0.7691 36 1 10.5421 -4.8843 0.2247 37 1 7.3101 -4.7481 -1.3252 38 1 2.2625 -2.8394 -0.5719 39 1 3.7657 -2.1331 -1.2413 40 1 3.8434 0.4198 -1.4830 41 1 2.4180 1.0265 -2.3596 42 1 3.1030 -1.5012 -3.4166 43 1 4.5235 -2.3837 -6.3030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279193383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:44 Heat of formation + Delta-G solvation = -51.923766 kcal Electronic energy + Delta-G solvation = -27018.842970 eV Core-core repulsion = 23189.745951 eV Total energy + Delta-G solvation = -3829.097020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.38707 -40.86523 -39.31037 -37.79021 -36.34245 -34.83751 -34.22035 -33.20832 -31.08923 -30.49366 -27.73613 -27.27998 -26.38456 -25.18755 -23.87358 -22.46922 -21.08274 -20.98713 -20.15846 -19.37997 -19.08469 -18.14116 -17.97750 -17.17123 -17.06392 -16.63158 -16.36316 -16.00958 -15.78839 -15.44478 -15.28769 -15.13225 -14.90612 -14.36520 -14.19948 -14.06244 -13.88458 -13.72937 -13.58219 -13.35673 -12.98393 -12.88738 -12.71536 -12.60576 -12.27000 -12.14261 -11.91389 -11.79839 -11.53784 -11.38735 -11.30605 -11.11534 -10.89476 -10.78978 -10.22087 -9.78723 -9.61762 -8.94252 -7.90536 -5.17310 -0.69796 0.31826 0.50226 0.73034 1.50035 1.50514 1.56253 1.70788 1.86871 2.29644 2.54077 2.58276 3.27825 3.42006 3.52658 3.69973 3.79309 3.89774 4.00859 4.10622 4.20389 4.21390 4.38669 4.50557 4.54091 4.60444 4.68936 4.72007 4.74512 4.90229 4.91667 4.97186 5.06320 5.10838 5.23107 5.30481 5.34549 5.53306 5.57494 5.82131 6.29091 6.32404 6.34366 6.88081 7.23076 7.40789 8.11917 8.40655 9.31540 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.007425 B = 0.005160 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.095903 B = 5425.236727 C = 8449.197463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 H 0.073 0.927 4 C 0.110 3.890 5 N -0.617 5.617 6 C 0.607 3.393 7 O -0.574 6.574 8 C -0.302 4.302 9 C -0.026 4.026 10 C -0.189 4.189 11 C 0.583 3.417 12 N -0.825 5.825 13 O -0.590 6.590 14 C -0.200 4.200 15 S 0.333 5.667 16 C 0.091 3.909 17 C -0.093 4.093 18 H 0.107 0.893 19 C 0.161 3.839 20 N -0.735 5.735 21 C -0.246 4.246 22 H 0.063 0.937 23 C -0.056 4.056 24 N -0.955 5.955 25 Si 0.956 3.044 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.284 1.284 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.138 0.862 35 H 0.417 0.583 36 H 0.415 0.585 37 H 0.215 0.785 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.000 1.000 41 H 0.023 0.977 42 H 0.380 0.620 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.353 -8.485 8.855 12.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.092 0.908 4 C -0.011 4.011 5 N -0.349 5.349 6 C 0.397 3.603 7 O -0.456 6.456 8 C -0.422 4.422 9 C -0.058 4.058 10 C -0.206 4.206 11 C 0.368 3.632 12 N -0.389 5.389 13 O -0.472 6.472 14 C -0.340 4.340 15 S 0.603 5.397 16 C -0.033 4.033 17 C -0.112 4.112 18 H 0.125 0.875 19 C 0.035 3.965 20 N -0.379 5.379 21 C -0.378 4.378 22 H 0.081 0.919 23 C -0.250 4.250 24 N -0.605 5.605 25 Si 0.786 3.214 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.210 1.210 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.156 0.844 35 H 0.249 0.751 36 H 0.248 0.752 37 H 0.231 0.769 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.018 0.982 41 H 0.040 0.960 42 H 0.214 0.786 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.106 -7.972 9.017 12.717 hybrid contribution 2.423 0.403 -0.202 2.464 sum -1.683 -7.569 8.816 11.740 Atomic orbital electron populations 1.21777 0.91307 1.03268 1.02803 1.22078 0.98021 0.98992 0.92126 0.90804 1.22654 0.85284 0.96170 0.97033 1.48900 1.12685 1.55440 1.17912 1.16704 0.80260 0.79771 0.83578 1.90775 1.79657 1.51614 1.23555 1.24117 0.99713 1.12086 1.06269 1.20213 0.91106 0.95352 0.99148 1.18872 0.96204 1.05910 0.99625 1.17716 0.85330 0.78252 0.81909 1.43436 1.17122 1.47453 1.30878 1.90811 1.72052 1.54165 1.30145 1.27008 1.02954 1.03507 1.00539 1.83759 1.05980 1.32325 1.17594 1.23012 0.99970 0.98768 0.81518 1.22316 0.97921 0.94809 0.96178 0.87472 1.20778 0.94501 0.94282 0.86963 1.42412 1.58046 1.15491 1.21917 1.19411 1.20900 0.97121 1.00341 0.91939 1.25250 1.02606 0.97021 1.00107 1.69722 1.50330 1.11108 1.29343 0.85496 0.79203 0.77543 0.79181 1.21298 1.21651 1.21000 0.90896 0.91057 0.91997 0.90765 0.87963 0.84395 0.75092 0.75184 0.76863 0.87184 0.90349 0.98211 0.95957 0.78628 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.92 71.98 0.64 -1.39 16 2 C -0.09 -1.98 3.31 -9.89 -0.03 -2.01 16 3 H 0.07 1.77 7.71 -2.39 -0.02 1.75 16 4 C 0.11 2.49 6.62 86.53 0.57 3.06 16 5 N -0.62 -17.60 3.32 -811.87 -2.70 -20.30 16 6 C 0.61 20.97 7.86 86.46 0.68 21.65 16 7 O -0.57 -23.39 17.06 -4.28 -0.07 -23.46 16 8 C -0.30 -9.59 6.29 23.72 0.15 -9.44 16 9 C -0.03 -0.84 9.48 21.67 0.21 -0.63 16 10 C -0.19 -5.15 5.82 -21.09 -0.12 -5.28 16 11 C 0.58 15.71 8.06 86.64 0.70 16.41 16 12 N -0.82 -12.98 8.84 -175.95 -1.56 -14.54 16 13 O -0.59 -21.23 17.53 -4.10 -0.07 -21.30 16 14 C -0.20 -4.30 10.41 67.45 0.70 -3.60 16 15 S 0.33 8.39 18.75 -56.49 -1.06 7.33 16 16 C 0.09 2.36 5.32 86.48 0.46 2.82 16 17 C -0.09 -2.46 2.76 -9.88 -0.03 -2.48 16 18 H 0.11 2.60 7.71 -2.39 -0.02 2.58 16 19 C 0.16 5.96 5.39 86.38 0.47 6.42 16 20 N -0.74 -33.46 5.16 -343.45 -1.77 -35.23 16 21 C -0.25 -12.90 9.99 84.03 0.84 -12.06 16 22 H 0.06 3.29 7.83 -2.91 -0.02 3.27 16 23 C -0.06 -3.00 5.50 84.86 0.47 -2.53 16 24 N -0.95 -52.47 13.06 21.65 0.28 -52.19 16 25 Si 0.96 43.75 29.55 68.60 2.03 45.78 16 26 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 28 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 29 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.85 7.84 -2.39 -0.02 1.83 16 33 H 0.10 1.77 7.83 -2.38 -0.02 1.75 16 34 H 0.14 4.99 7.96 -2.91 -0.02 4.97 16 35 H 0.42 3.82 7.29 -92.70 -0.68 3.15 16 36 H 0.42 5.21 8.93 -92.71 -0.83 4.39 16 37 H 0.21 2.61 6.99 -2.91 -0.02 2.59 16 38 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.08 2.40 4.09 -16.89 -0.07 2.33 16 40 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.38 17.56 7.49 -92.71 -0.69 16.87 16 43 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -75.45 369.08 -0.39 -75.84 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -1.17 Total: 27.12 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 5.70 Total: 10.94 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -5.74 Total: -122.25 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -0.14 Total: -44.76 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 8.39 SS G_CDS: -1.06 Total: 7.33 kcal Total: -75.45 -0.39 -75.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279193383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.919 kcal (2) G-P(sol) polarization free energy of solvation -75.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds