Wall clock time and date at job start Tue Mar 31 2020 20:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.46765 * 2 1 4 4 N 1.46494 * 109.47608 * 239.99845 * 2 1 3 5 5 C 1.34777 * 119.99590 * 84.99646 * 4 2 1 6 6 O 1.21624 * 120.00550 * 0.02562 * 5 4 2 7 7 C 1.47275 * 119.99755 * 180.02562 * 5 4 2 8 8 C 1.46685 * 126.93886 * 0.31397 * 7 5 4 9 9 C 1.34489 * 106.32779 * 180.13074 * 8 7 5 10 10 N 1.36442 * 108.85844 * 359.60431 * 9 8 7 11 11 H 0.96998 * 124.85710 * 180.27948 * 10 9 8 12 12 C 1.34659 * 110.29606 * 0.26575 * 10 9 8 13 13 C 1.52999 * 109.46944 * 119.99617 * 2 1 3 14 14 C 1.53953 * 113.74484 * 281.82650 * 13 2 1 15 15 N 1.47814 * 86.03423 * 222.08432 * 14 13 2 16 16 C 1.34776 * 134.45228 * 204.63742 * 15 14 13 17 17 O 1.21284 * 120.00049 * 179.87082 * 16 15 14 18 18 C 1.50694 * 120.00145 * 359.87542 * 16 15 14 19 19 S 1.81006 * 109.47114 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99834 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00111 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99753 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99940 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46872 * 59.99959 * 24 22 20 26 26 H 1.48498 * 109.47252 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47371 * 300.00105 * 24 22 20 28 28 C 1.47580 * 91.05652 * 24.55091 * 15 14 13 29 29 H 1.08999 * 109.47332 * 60.07883 * 1 2 3 30 30 H 1.09005 * 109.47117 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.48046 * 300.07246 * 1 2 3 32 32 H 0.96995 * 120.00138 * 264.99980 * 4 2 1 33 33 H 1.07998 * 126.83554 * 0.02562 * 8 7 5 34 34 H 1.07999 * 125.57323 * 179.86272 * 9 8 7 35 35 H 1.08006 * 125.79941 * 180.02562 * 12 10 9 36 36 H 1.08996 * 112.94484 * 53.42256 * 13 2 1 37 37 H 1.08999 * 113.76735 * 336.34955 * 14 13 2 38 38 H 1.08993 * 113.76860 * 107.74968 * 14 13 2 39 39 H 1.09000 * 109.47387 * 299.99502 * 18 16 15 40 40 H 1.08998 * 109.47325 * 59.99622 * 18 16 15 41 41 H 0.97005 * 120.00067 * 180.02562 * 23 22 20 42 42 H 1.08998 * 113.76895 * 221.15390 * 28 15 14 43 43 H 1.08999 * 113.87161 * 89.76105 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3570 6 8 1.8581 1.1620 -2.4116 7 6 2.6376 -0.7126 -3.5596 8 6 3.0213 -2.1242 -3.6676 9 6 3.4069 -2.3148 -4.9418 10 7 3.2815 -1.1383 -5.6213 11 1 3.4930 -1.0148 -6.5598 12 6 2.8217 -0.1729 -4.8027 13 6 2.0399 -0.7212 1.2493 14 6 1.9742 0.1331 2.5284 15 7 3.3096 -0.4177 2.8418 16 6 4.0080 -0.6110 3.9782 17 8 5.1167 -1.1007 3.9328 18 6 3.4113 -0.2190 5.3052 19 16 4.5833 -0.6017 6.6304 20 6 3.6556 -0.0571 8.0260 21 1 2.6698 0.3620 7.8889 22 6 4.1924 -0.1657 9.3014 23 7 5.3942 -0.6760 9.4684 24 14 3.2093 0.4124 10.7808 25 1 1.9386 -0.3521 10.8600 26 1 3.9991 0.1884 12.0182 27 1 2.9083 1.8597 10.6404 28 6 3.5701 -0.6728 1.4117 29 1 -0.3634 0.5126 -0.8907 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5149 0.8892 32 1 2.2491 -1.6317 -1.1525 33 1 3.0001 -2.8630 -2.8801 34 1 3.7547 -3.2478 -5.3601 35 1 2.6304 0.8530 -5.0808 36 1 1.6176 -1.7192 1.3659 37 1 1.9749 1.2067 2.3402 38 1 1.1953 -0.1776 3.2246 39 1 3.1978 0.8499 5.3061 40 1 2.4872 -0.7741 5.4663 41 1 5.7692 -0.7522 10.3598 42 1 4.0628 -1.6256 1.2180 43 1 4.0407 0.1625 0.8932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280635974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:40 Heat of formation + Delta-G solvation = 6.973308 kcal Electronic energy + Delta-G solvation = -25323.541050 eV Core-core repulsion = 21496.997999 eV Total energy + Delta-G solvation = -3826.543051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.50809 -40.47220 -39.17579 -37.57073 -35.17189 -32.41438 -32.14526 -30.76141 -30.00456 -29.46805 -27.66808 -26.22496 -25.45597 -24.31197 -22.53054 -21.21534 -20.66194 -19.77003 -19.14965 -18.98393 -17.69648 -16.76251 -16.62318 -16.23709 -15.47581 -15.25618 -15.12678 -14.78820 -14.53124 -14.26527 -14.10568 -13.91278 -13.86998 -13.75447 -13.44955 -12.86557 -12.68026 -12.63369 -12.56217 -12.45574 -12.36150 -11.88427 -11.73838 -11.16219 -11.03656 -11.02440 -10.92335 -10.74579 -10.10658 -9.81225 -9.44777 -9.31398 -9.16403 -9.04450 -8.78006 -8.55198 -8.22274 -6.48757 -6.19866 -3.90679 1.44258 2.01529 2.66980 2.77652 3.07510 3.13077 3.24820 3.25636 3.30095 3.33532 3.57669 4.15937 4.22040 4.43723 4.49630 4.62523 4.71732 4.80240 4.87557 4.96886 5.00630 5.14936 5.16261 5.25118 5.35404 5.38013 5.41645 5.47794 5.51799 5.59270 5.61124 5.75853 5.87812 5.94143 6.05989 6.07845 6.17051 6.25812 6.30767 6.46735 6.96719 7.37734 7.60828 7.85854 8.12969 8.36672 8.58227 9.25094 10.87514 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.028807 B = 0.001822 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.758384 B =15363.558229 C =16012.449569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.093 0.907 4 N -0.720 5.720 5 C 0.593 3.407 6 O -0.553 6.553 7 C -0.236 4.236 8 C -0.169 4.169 9 C -0.017 4.017 10 N -0.554 5.554 11 H 0.418 0.582 12 C 0.076 3.924 13 C -0.134 4.134 14 C 0.115 3.885 15 N -0.652 5.652 16 C 0.555 3.445 17 O -0.516 6.516 18 C -0.145 4.145 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.116 3.884 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.401 0.599 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.177 0.823 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.269 0.731 42 H 0.080 0.920 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 -2.205 -31.539 33.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.048 3.952 3 H 0.111 0.889 4 N -0.371 5.371 5 C 0.382 3.618 6 O -0.432 6.432 7 C -0.246 4.246 8 C -0.194 4.194 9 C -0.145 4.145 10 N -0.149 5.149 11 H 0.255 0.745 12 C -0.061 4.061 13 C -0.154 4.154 14 C -0.009 4.009 15 N -0.390 5.390 16 C 0.345 3.655 17 O -0.390 6.390 18 C -0.296 4.296 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.007 4.007 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.235 0.765 33 H 0.164 0.836 34 H 0.186 0.814 35 H 0.194 0.806 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.282 -2.194 -31.405 32.552 hybrid contribution -1.685 0.490 0.625 1.863 sum -9.967 -1.705 -30.779 32.398 Atomic orbital electron populations 1.22160 0.94774 1.02340 1.02791 1.20920 0.94338 0.97290 0.82602 0.88873 1.45786 1.67885 1.14110 1.09314 1.17360 0.76436 0.85710 0.82256 1.90778 1.51501 1.15701 1.85260 1.20381 1.15241 0.94878 0.94136 1.22082 1.05689 0.94960 0.96632 1.21819 1.08918 0.90424 0.93337 1.41677 1.51878 1.09029 1.12311 0.74523 1.21861 0.99865 0.94578 0.89816 1.23533 0.96706 1.01032 0.94121 1.23159 0.85427 0.98448 0.93875 1.50047 1.18994 1.64468 1.05538 1.20043 0.84431 0.77295 0.83729 1.90711 1.19008 1.43100 1.86182 1.23475 1.05383 1.04343 0.96368 1.85398 1.21130 1.82167 0.94746 1.22821 1.04889 1.48073 0.92595 0.90967 1.24992 0.95220 0.94859 0.98488 1.70011 1.14984 1.41961 1.23335 0.86220 0.79574 0.79204 0.80479 1.19937 1.20804 1.19929 1.23045 0.94885 1.01977 0.80768 0.91942 0.92317 0.91278 0.76512 0.83645 0.81358 0.80593 0.87367 0.89458 0.89481 0.89341 0.89338 0.92131 0.90131 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.44 37.16 0.35 -0.83 16 2 C 0.15 1.23 2.29 -67.94 -0.16 1.07 16 3 H 0.09 0.90 7.48 -51.93 -0.39 0.52 16 4 N -0.72 -5.67 4.94 -54.93 -0.27 -5.95 16 5 C 0.59 6.12 7.77 -12.59 -0.10 6.02 16 6 O -0.55 -7.59 16.57 5.26 0.09 -7.50 16 7 C -0.24 -2.00 6.29 -103.35 -0.65 -2.65 16 8 C -0.17 -1.08 10.56 -37.50 -0.40 -1.47 16 9 C -0.02 -0.08 11.89 -16.83 -0.20 -0.28 16 10 N -0.55 -2.28 5.90 -12.85 -0.08 -2.35 16 11 H 0.42 0.34 8.96 -40.82 -0.37 -0.03 16 12 C 0.08 0.51 11.69 -16.85 -0.20 0.31 16 13 C -0.13 -1.09 3.35 -89.68 -0.30 -1.39 16 14 C 0.11 1.14 8.09 -2.83 -0.02 1.11 16 15 N -0.65 -9.48 3.61 -178.14 -0.64 -10.13 16 16 C 0.56 11.10 8.07 -10.99 -0.09 11.01 16 17 O -0.52 -12.43 16.59 5.55 0.09 -12.34 16 18 C -0.15 -3.06 5.91 36.00 0.21 -2.85 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 20 C -0.54 -15.45 9.50 30.94 0.29 -15.16 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 24 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 C 0.12 1.30 8.27 -2.96 -0.02 1.28 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.40 2.36 7.73 -40.82 -0.32 2.04 16 33 H 0.15 0.67 7.70 -52.49 -0.40 0.26 16 34 H 0.17 0.32 8.06 -52.49 -0.42 -0.11 16 35 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.77 8.03 -51.93 -0.42 0.35 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 40 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 41 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -39.36 386.20 -8.94 -48.30 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.08 Total: -1.02 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.37 Total: -1.81 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.26 Total: -44.10 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.18 Total: -19.84 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.36 -8.94 -48.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280635974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.276 kcal (2) G-P(sol) polarization free energy of solvation -39.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds