Wall clock time and date at job start Tue Mar 31 2020 20:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.00012 * 2 1 4 4 C 1.54320 * 109.88754 * 238.90041 * 2 1 3 5 5 H 1.09005 * 110.71457 * 336.93394 * 4 2 1 6 6 N 1.46502 * 110.72102 * 100.02356 * 4 2 1 7 7 C 1.34770 * 120.00432 * 205.00364 * 6 4 2 8 8 O 1.21287 * 119.99738 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00317 * 180.02562 * 7 6 4 10 10 S 1.80996 * 109.47365 * 179.97438 * 9 7 6 11 11 C 1.76201 * 100.00032 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00014 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99722 * 179.72705 * 11 10 9 14 14 N 1.31628 * 120.00360 * 0.27353 * 13 11 10 15 15 Si 1.86801 * 119.99714 * 180.27630 * 13 11 10 16 16 H 1.48496 * 109.47447 * 59.99825 * 15 13 11 17 17 H 1.48500 * 109.47276 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46792 * 299.99486 * 15 13 11 19 19 C 1.55154 * 102.94524 * 218.39224 * 4 2 1 20 20 C 1.54906 * 101.58108 * 35.50289 * 19 4 2 21 21 N 1.47025 * 109.87880 * 121.09312 * 2 1 3 22 22 C 1.34773 * 125.65156 * 298.39201 * 21 2 1 23 23 O 1.21694 * 119.99817 * 354.43298 * 22 21 2 24 24 C 1.46677 * 120.00412 * 174.42879 * 22 21 2 25 25 C 1.37872 * 126.23548 * 173.26057 * 24 22 21 26 26 C 1.39838 * 107.08615 * 180.02562 * 25 24 22 27 27 C 1.35451 * 107.86354 * 0.02562 * 26 25 24 28 28 N 1.35538 * 108.87206 * 359.72671 * 27 26 25 29 29 H 0.97000 * 125.67778 * 180.30768 * 28 27 26 30 30 H 1.09000 * 109.46965 * 181.09671 * 1 2 3 31 31 H 1.08999 * 109.47117 * 301.09913 * 1 2 3 32 32 H 1.08995 * 109.46867 * 61.10114 * 1 2 3 33 33 H 0.97001 * 119.99269 * 25.00967 * 6 4 2 34 34 H 1.09010 * 109.47079 * 59.99898 * 9 7 6 35 35 H 1.08998 * 109.47124 * 300.00231 * 9 7 6 36 36 H 0.97002 * 119.99995 * 180.02562 * 14 13 11 37 37 H 1.09002 * 111.00284 * 153.57636 * 19 4 2 38 38 H 1.09000 * 111.00628 * 277.42726 * 19 4 2 39 39 H 1.09001 * 110.36542 * 204.15348 * 20 19 4 40 40 H 1.09000 * 110.46326 * 81.87706 * 20 19 4 41 41 H 1.08000 * 126.45439 * 359.97174 * 25 24 22 42 42 H 1.08001 * 126.06864 * 180.02562 * 26 25 24 43 43 H 1.08002 * 125.56425 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 1 1.3040 -1.4437 -1.6200 6 7 2.4556 0.1960 -2.2875 7 6 2.4583 -0.1884 -3.5792 8 8 2.1296 -1.3174 -3.8766 9 6 2.8709 0.7840 -4.6539 10 16 2.7711 -0.0247 -6.2701 11 6 3.2928 1.3002 -7.3079 12 1 3.5535 2.2547 -6.8751 13 6 3.3736 1.1155 -8.6812 14 7 3.0554 -0.0477 -9.2088 15 14 3.9341 2.5178 -9.7808 16 1 5.3062 2.9327 -9.3932 17 1 3.9336 2.0677 -11.1959 18 1 3.0071 3.6678 -9.6274 19 6 3.2877 -1.5143 -0.6922 20 6 2.8145 -1.8794 0.7369 21 7 2.0299 -0.7140 1.1840 22 6 1.8073 -0.3620 2.4657 23 8 1.2282 0.6778 2.7193 24 6 2.2629 -1.2321 3.5551 25 6 2.2216 -0.9411 4.9021 26 6 2.7540 -2.0440 5.5772 27 6 3.1040 -2.9686 4.6514 28 7 2.8055 -2.4898 3.4190 29 1 2.9515 -2.9553 2.5806 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4966 -0.8997 33 1 2.7189 1.0987 -2.0495 34 1 3.8952 1.1110 -4.4743 35 1 2.2058 1.6474 -4.6375 36 1 3.1123 -0.1768 -10.1685 37 1 3.4853 -2.4111 -1.2794 38 1 4.1655 -0.8689 -0.6601 39 1 3.6716 -2.0338 1.3924 40 1 2.1891 -2.7719 0.7149 41 1 1.8492 -0.0323 5.3512 42 1 2.8662 -2.1412 6.6470 43 1 3.5442 -3.9323 4.8612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282324533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:29 Heat of formation + Delta-G solvation = -13.575989 kcal Electronic energy + Delta-G solvation = -25982.255969 eV Core-core repulsion = 22154.821834 eV Total energy + Delta-G solvation = -3827.434135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81481 -40.38966 -39.07934 -37.62914 -34.35347 -32.46770 -32.18525 -31.49056 -31.14002 -29.55892 -28.75616 -25.82388 -25.42351 -24.20075 -22.27111 -21.50640 -20.71553 -20.50420 -20.22126 -18.11050 -17.90489 -17.18557 -16.55701 -16.16460 -15.92448 -15.37220 -15.01183 -14.83796 -14.68675 -14.25971 -14.16361 -14.04415 -13.77595 -13.52171 -13.37386 -13.09395 -12.97356 -12.72535 -12.68002 -12.58902 -12.36241 -12.11423 -11.87475 -11.47105 -11.14832 -11.08171 -11.06557 -10.80333 -10.40126 -9.87003 -9.54920 -9.42524 -9.20365 -9.10719 -9.04064 -8.61547 -8.30200 -6.55152 -6.25516 -3.96677 1.09683 2.32203 2.36328 2.71778 2.93521 2.96338 3.05835 3.21135 3.25149 3.28133 3.61751 3.90907 4.06204 4.16796 4.36210 4.56719 4.64376 4.69247 4.74614 4.84956 4.96847 5.02792 5.05808 5.09518 5.09994 5.29134 5.32813 5.54232 5.61912 5.63813 5.68275 5.73491 5.80965 5.83150 5.93539 5.99114 6.07742 6.32049 6.45930 6.53018 6.92077 7.04224 7.53402 7.56113 7.76010 8.31182 8.46234 9.19921 10.81793 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.033530 B = 0.001932 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.881767 B =14492.913593 C =14775.870498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.085 0.915 4 C 0.142 3.858 5 H 0.110 0.890 6 N -0.730 5.730 7 C 0.537 3.463 8 O -0.514 6.514 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.144 4.144 20 C 0.087 3.913 21 N -0.616 5.616 22 C 0.607 3.393 23 O -0.524 6.524 24 C -0.054 4.054 25 C -0.106 4.106 26 C -0.212 4.212 27 C 0.020 3.980 28 N -0.544 5.544 29 H 0.418 0.582 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.401 0.599 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.269 0.731 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -5.016 27.402 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 H 0.103 0.897 4 C 0.035 3.965 5 H 0.128 0.872 6 N -0.384 5.384 7 C 0.323 3.677 8 O -0.388 6.388 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.183 4.183 20 C -0.037 4.037 21 N -0.351 5.351 22 C 0.397 3.603 23 O -0.400 6.400 24 C -0.167 4.167 25 C -0.133 4.133 26 C -0.236 4.236 27 C -0.116 4.116 28 N -0.144 5.144 29 H 0.260 0.740 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.235 0.765 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.296 -6.471 26.745 27.518 hybrid contribution 1.076 2.259 -0.568 2.566 sum 0.780 -4.212 26.177 26.525 Atomic orbital electron populations 1.22131 0.93611 1.02763 1.03501 1.21735 0.95361 0.96575 0.83472 0.89707 1.21905 0.96594 0.91523 0.86490 0.87169 1.45949 1.70897 1.15703 1.05849 1.20349 0.76344 0.88691 0.82314 1.90705 1.45890 1.20466 1.81727 1.23540 1.04261 1.01830 1.00854 1.85376 1.88294 1.18478 0.91071 1.22824 1.52492 0.99326 0.93875 0.90934 1.24990 0.94864 0.96555 0.97127 1.70001 1.45097 1.22585 1.12590 0.86222 0.79221 0.81176 0.78877 1.19929 1.20792 1.19911 1.23243 0.98916 1.02491 0.93642 1.22562 0.95037 0.89347 0.96754 1.48393 1.53062 1.28696 1.04943 1.16705 0.78958 0.84763 0.79873 1.90851 1.42470 1.23900 1.82751 1.20340 1.12838 0.88198 0.95308 1.21346 1.01622 0.99851 0.90442 1.20931 1.08195 0.95008 0.99467 1.22118 1.05073 1.00746 0.83692 1.42692 1.48217 1.14342 1.09189 0.74031 0.92185 0.91019 0.90861 0.76466 0.89106 0.89050 0.92094 0.88505 0.89672 0.90435 0.90651 0.83458 0.83850 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.10 37.16 0.34 -1.30 16 2 C 0.13 1.29 3.18 -66.95 -0.21 1.08 16 3 H 0.08 0.85 7.72 -51.93 -0.40 0.45 16 4 C 0.14 1.46 2.85 -66.10 -0.19 1.27 16 5 H 0.11 1.31 7.25 -51.93 -0.38 0.93 16 6 N -0.73 -8.65 5.18 -52.03 -0.27 -8.92 16 7 C 0.54 9.13 7.85 -10.99 -0.09 9.04 16 8 O -0.51 -10.68 15.51 5.55 0.09 -10.59 16 9 C -0.15 -2.94 6.16 36.00 0.22 -2.72 16 10 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 11 C -0.54 -14.99 9.50 30.94 0.29 -14.69 16 12 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -25.75 13.22 55.49 0.73 -25.01 16 15 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 C -0.14 -1.20 6.77 -24.59 -0.17 -1.37 16 20 C 0.09 0.57 5.25 -2.53 -0.01 0.56 16 21 N -0.62 -5.76 3.06 -164.55 -0.50 -6.26 16 22 C 0.61 6.94 7.56 -12.86 -0.10 6.84 16 23 O -0.52 -7.67 16.15 5.19 0.08 -7.58 16 24 C -0.05 -0.52 6.82 -81.98 -0.56 -1.08 16 25 C -0.11 -0.99 10.66 -39.12 -0.42 -1.41 16 26 C -0.21 -1.51 10.81 -39.98 -0.43 -1.94 16 27 C 0.02 0.11 11.89 -16.91 -0.20 -0.09 16 28 N -0.54 -3.56 5.36 -9.39 -0.05 -3.61 16 29 H 0.42 1.83 5.37 -40.82 -0.22 1.61 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.82 7.09 -51.93 -0.37 0.45 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.40 3.78 8.37 -40.82 -0.34 3.44 16 34 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 35 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 36 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.40 6.23 -51.93 -0.32 0.07 16 40 H 0.08 0.39 7.83 -51.93 -0.41 -0.02 16 41 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.17 0.39 8.06 -52.49 -0.42 -0.03 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -36.11 372.80 -8.94 -45.05 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.79 Total: 2.80 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.62 Total: -3.82 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.09 Total: -43.80 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.17 Total: -18.18 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.11 -8.94 -45.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282324533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.472 kcal (2) G-P(sol) polarization free energy of solvation -36.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds