Wall clock time and date at job start Tue Mar 31 2020 20:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.00012 * 2 1 4 4 C 1.54320 * 109.88754 * 238.90041 * 2 1 3 5 5 H 1.09005 * 110.71457 * 336.93394 * 4 2 1 6 6 N 1.46502 * 110.72102 * 100.02356 * 4 2 1 7 7 C 1.34770 * 120.00432 * 205.00364 * 6 4 2 8 8 O 1.21287 * 119.99738 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00317 * 180.02562 * 7 6 4 10 10 S 1.80996 * 109.47365 * 179.97438 * 9 7 6 11 11 C 1.76201 * 100.00032 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00014 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99722 * 179.72705 * 11 10 9 14 14 N 1.31628 * 120.00360 * 0.27353 * 13 11 10 15 15 Si 1.86801 * 119.99714 * 180.27630 * 13 11 10 16 16 H 1.48496 * 109.47447 * 59.99825 * 15 13 11 17 17 H 1.48500 * 109.47276 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46792 * 299.99486 * 15 13 11 19 19 C 1.55154 * 102.94524 * 218.39224 * 4 2 1 20 20 C 1.54906 * 101.58108 * 35.50289 * 19 4 2 21 21 N 1.47025 * 109.87880 * 121.09312 * 2 1 3 22 22 C 1.34773 * 125.65156 * 298.39201 * 21 2 1 23 23 O 1.21694 * 119.99817 * 354.43298 * 22 21 2 24 24 C 1.46677 * 120.00412 * 174.42879 * 22 21 2 25 25 C 1.37872 * 126.23548 * 173.26057 * 24 22 21 26 26 C 1.39838 * 107.08615 * 180.02562 * 25 24 22 27 27 C 1.35451 * 107.86354 * 0.02562 * 26 25 24 28 28 N 1.35538 * 108.87206 * 359.72671 * 27 26 25 29 29 H 0.97000 * 125.67778 * 180.30768 * 28 27 26 30 30 H 1.09000 * 109.46965 * 181.09671 * 1 2 3 31 31 H 1.08999 * 109.47117 * 301.09913 * 1 2 3 32 32 H 1.08995 * 109.46867 * 61.10114 * 1 2 3 33 33 H 0.97001 * 119.99269 * 25.00967 * 6 4 2 34 34 H 1.09010 * 109.47079 * 59.99898 * 9 7 6 35 35 H 1.08998 * 109.47124 * 300.00231 * 9 7 6 36 36 H 0.97002 * 119.99995 * 180.02562 * 14 13 11 37 37 H 1.09002 * 111.00284 * 153.57636 * 19 4 2 38 38 H 1.09000 * 111.00628 * 277.42726 * 19 4 2 39 39 H 1.09001 * 110.36542 * 204.15348 * 20 19 4 40 40 H 1.09000 * 110.46326 * 81.87706 * 20 19 4 41 41 H 1.08000 * 126.45439 * 359.97174 * 25 24 22 42 42 H 1.08001 * 126.06864 * 180.02562 * 26 25 24 43 43 H 1.08002 * 125.56425 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 1 1.3040 -1.4437 -1.6200 6 7 2.4556 0.1960 -2.2875 7 6 2.4583 -0.1884 -3.5792 8 8 2.1296 -1.3174 -3.8766 9 6 2.8709 0.7840 -4.6539 10 16 2.7711 -0.0247 -6.2701 11 6 3.2928 1.3002 -7.3079 12 1 3.5535 2.2547 -6.8751 13 6 3.3736 1.1155 -8.6812 14 7 3.0554 -0.0477 -9.2088 15 14 3.9341 2.5178 -9.7808 16 1 5.3062 2.9327 -9.3932 17 1 3.9336 2.0677 -11.1959 18 1 3.0071 3.6678 -9.6274 19 6 3.2877 -1.5143 -0.6922 20 6 2.8145 -1.8794 0.7369 21 7 2.0299 -0.7140 1.1840 22 6 1.8073 -0.3620 2.4657 23 8 1.2282 0.6778 2.7193 24 6 2.2629 -1.2321 3.5551 25 6 2.2216 -0.9411 4.9021 26 6 2.7540 -2.0440 5.5772 27 6 3.1040 -2.9686 4.6514 28 7 2.8055 -2.4898 3.4190 29 1 2.9515 -2.9553 2.5806 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4966 -0.8997 33 1 2.7189 1.0987 -2.0495 34 1 3.8952 1.1110 -4.4743 35 1 2.2058 1.6474 -4.6375 36 1 3.1123 -0.1768 -10.1685 37 1 3.4853 -2.4111 -1.2794 38 1 4.1655 -0.8689 -0.6601 39 1 3.6716 -2.0338 1.3924 40 1 2.1891 -2.7719 0.7149 41 1 1.8492 -0.0323 5.3512 42 1 2.8662 -2.1412 6.6470 43 1 3.5442 -3.9323 4.8612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282324533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:29 Heat of formation + Delta-G solvation = -39.114299 kcal Electronic energy + Delta-G solvation = -25983.363393 eV Core-core repulsion = 22154.821834 eV Total energy + Delta-G solvation = -3828.541559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.44774 -41.26642 -40.21424 -38.59880 -35.44514 -34.58022 -33.00375 -32.34723 -31.83561 -30.62848 -29.66515 -27.68362 -26.54875 -24.94643 -23.07432 -22.15853 -21.80803 -21.20580 -20.98186 -19.81428 -18.82286 -18.16904 -17.69196 -17.04406 -16.98923 -16.87312 -16.38893 -16.11542 -15.88948 -15.27909 -14.97778 -14.85111 -14.68835 -14.66101 -14.39984 -14.26210 -14.00043 -13.65592 -13.55984 -13.39919 -13.20586 -13.16626 -13.05781 -12.87396 -12.70718 -12.62946 -12.37225 -11.94748 -11.73952 -11.29762 -11.12832 -10.98648 -10.27954 -10.20489 -10.03427 -9.89649 -9.19158 -8.65409 -8.34579 -6.11893 0.41547 1.23860 1.43132 1.43613 1.52385 1.57194 1.66859 1.81597 2.17792 2.25300 2.27981 2.37477 2.99634 3.14481 3.31128 3.35422 3.68250 3.85643 3.88262 4.00245 4.03795 4.18412 4.29517 4.32868 4.34607 4.42663 4.46827 4.52258 4.52809 4.56962 4.81493 4.90862 4.95691 5.06095 5.12811 5.15322 5.28250 5.41164 5.42273 5.74901 5.93140 6.19779 6.26409 6.42275 6.51708 6.94544 7.07133 7.18406 8.74097 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.033530 B = 0.001932 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.881767 B =14492.913593 C =14775.870498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.084 0.916 4 C 0.141 3.859 5 H 0.098 0.902 6 N -0.705 5.705 7 C 0.543 3.457 8 O -0.556 6.556 9 C -0.132 4.132 10 S -0.145 6.145 11 C -0.548 4.548 12 H 0.082 0.918 13 C 0.015 3.985 14 N -0.910 5.910 15 Si 0.996 3.004 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.264 1.264 19 C -0.138 4.138 20 C 0.088 3.912 21 N -0.613 5.613 22 C 0.603 3.397 23 O -0.569 6.569 24 C -0.082 4.082 25 C -0.124 4.124 26 C -0.227 4.227 27 C 0.043 3.957 28 N -0.534 5.534 29 H 0.428 0.572 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.416 0.584 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.136 0.864 42 H 0.161 0.839 43 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.112 -5.148 28.844 29.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.033 3.967 3 H 0.102 0.898 4 C 0.035 3.965 5 H 0.116 0.884 6 N -0.359 5.359 7 C 0.329 3.671 8 O -0.433 6.433 9 C -0.284 4.284 10 S 0.082 5.918 11 C -0.696 4.696 12 H 0.100 0.900 13 C -0.190 4.190 14 N -0.546 5.546 15 Si 0.817 3.183 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.188 1.188 19 C -0.177 4.177 20 C -0.034 4.034 21 N -0.347 5.347 22 C 0.395 3.605 23 O -0.449 6.449 24 C -0.194 4.194 25 C -0.151 4.151 26 C -0.251 4.251 27 C -0.094 4.094 28 N -0.135 5.135 29 H 0.272 0.728 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.253 0.747 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.154 0.846 42 H 0.179 0.821 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 1.226 -6.599 28.213 29.000 hybrid contribution 0.603 2.256 -0.832 2.479 sum 1.829 -4.343 27.381 27.783 Atomic orbital electron populations 1.22070 0.93967 1.02728 1.02756 1.21614 0.95029 0.96582 0.83507 0.89806 1.21955 0.97565 0.91117 0.85840 0.88436 1.45651 1.69141 1.16732 1.04421 1.19948 0.76194 0.87582 0.83374 1.90699 1.48150 1.21949 1.82542 1.23386 1.06060 1.01925 0.96982 1.85505 1.88698 1.21094 0.96487 1.23180 1.52262 0.99632 0.94533 0.89991 1.26086 0.94744 0.99371 0.98834 1.70163 1.46471 1.25022 1.12967 0.85044 0.79185 0.77537 0.76493 1.18684 1.20420 1.18823 1.23190 0.97875 1.02193 0.94429 1.22739 0.95875 0.88929 0.95852 1.48376 1.52814 1.29241 1.04243 1.16988 0.78413 0.84490 0.80597 1.90816 1.44683 1.25883 1.83479 1.20091 1.15087 0.89579 0.94683 1.21524 1.02088 1.00486 0.91035 1.21226 1.08486 0.94583 1.00777 1.22800 1.02525 1.01463 0.82646 1.42671 1.47421 1.13226 1.10204 0.72761 0.91853 0.92538 0.90782 0.74681 0.87125 0.87328 0.91998 0.88496 0.89242 0.88275 0.88549 0.84597 0.82121 0.77016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.10 71.98 0.65 -2.50 16 2 C 0.14 2.55 3.18 45.34 0.14 2.69 16 3 H 0.08 1.60 7.72 -2.39 -0.02 1.58 16 4 C 0.14 2.73 2.85 46.18 0.13 2.86 16 5 H 0.10 2.24 7.25 -2.38 -0.02 2.22 16 6 N -0.71 -15.67 5.18 -436.92 -2.26 -17.93 16 7 C 0.54 18.06 7.85 87.66 0.69 18.75 16 8 O -0.56 -23.26 15.51 -3.05 -0.05 -23.30 16 9 C -0.13 -4.92 6.16 71.23 0.44 -4.48 16 10 S -0.14 -7.76 20.57 -56.49 -1.16 -8.92 16 11 C -0.55 -30.66 9.50 67.95 0.65 -30.01 16 12 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 13 C 0.01 0.82 5.49 84.86 0.47 1.29 16 14 N -0.91 -54.98 13.22 21.65 0.29 -54.70 16 15 Si 1.00 42.98 29.55 68.60 2.03 45.00 16 16 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 17 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 18 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 19 C -0.14 -2.01 6.77 31.98 0.22 -1.79 16 20 C 0.09 0.95 5.25 86.85 0.46 1.40 16 21 N -0.61 -10.73 3.06 -792.72 -2.43 -13.16 16 22 C 0.60 13.66 7.56 86.45 0.65 14.31 16 23 O -0.57 -17.26 16.15 -4.33 -0.07 -17.33 16 24 C -0.08 -1.50 6.82 40.35 0.28 -1.22 16 25 C -0.12 -2.28 10.66 22.57 0.24 -2.04 16 26 C -0.23 -2.74 10.81 22.01 0.24 -2.50 16 27 C 0.04 0.33 11.89 83.48 0.99 1.32 16 28 N -0.53 -5.46 5.36 -183.62 -0.98 -6.45 16 29 H 0.43 2.23 5.37 -92.71 -0.50 1.74 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.33 7.09 -2.39 -0.02 1.31 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.42 6.94 8.37 -92.71 -0.78 6.17 16 34 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 35 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.10 0.68 6.23 -2.39 -0.01 0.67 16 40 H 0.10 0.69 7.83 -2.39 -0.02 0.67 16 41 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 42 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.21 -0.19 8.06 -2.91 -0.02 -0.21 16 Total: -1.00 -81.93 372.80 1.38 -80.55 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.22 Total: 18.16 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 6.24 Total: -1.92 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -5.39 Total: -92.23 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -0.12 Total: -40.63 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -7.76 SS G_CDS: -1.16 Total: -8.92 kcal Total: -81.93 1.38 -80.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282324533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.436 kcal (2) G-P(sol) polarization free energy of solvation -81.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds