Wall clock time and date at job start Tue Mar 31 2020 20:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47308 * 2 1 4 4 N 1.46498 * 109.47595 * 240.00248 * 2 1 3 5 5 C 1.34776 * 120.00446 * 85.00070 * 4 2 1 6 6 O 1.21634 * 119.99536 * 359.97438 * 5 4 2 7 7 C 1.47192 * 120.00406 * 180.02562 * 5 4 2 8 8 C 1.44421 * 123.45919 * 179.97438 * 7 5 4 9 9 C 1.32771 * 113.07979 * 179.97438 * 8 7 5 10 10 S 1.75501 * 110.57703 * 359.97438 * 9 8 7 11 11 C 1.36007 * 123.45974 * 359.69705 * 7 5 4 12 12 C 1.53002 * 109.47240 * 120.00019 * 2 1 3 13 13 C 1.53935 * 113.73511 * 281.87561 * 12 2 1 14 14 N 1.48181 * 86.10136 * 221.95483 * 13 12 2 15 15 C 1.46900 * 111.07275 * 137.52029 * 14 13 12 16 16 C 1.50702 * 109.47072 * 90.56558 * 15 14 13 17 17 O 1.21291 * 120.00413 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99802 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00018 * 179.97438 * 18 16 15 20 20 H 1.08013 * 119.99987 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00254 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00103 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00232 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47030 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47087 * 119.99924 * 23 21 19 26 26 H 1.48500 * 109.47438 * 240.00323 * 23 21 19 27 27 C 1.47957 * 90.80106 * 24.59891 * 14 13 12 28 28 H 1.09006 * 109.47380 * 180.09210 * 1 2 3 29 29 H 1.08990 * 109.47422 * 300.09596 * 1 2 3 30 30 H 1.09005 * 109.46802 * 60.09740 * 1 2 3 31 31 H 0.97007 * 120.00100 * 265.00571 * 4 2 1 32 32 H 1.07996 * 123.46083 * 359.95853 * 8 7 5 33 33 H 1.08009 * 124.71067 * 180.02562 * 9 8 7 34 34 H 1.08008 * 124.59134 * 0.02562 * 11 7 5 35 35 H 1.09002 * 112.93631 * 53.43953 * 12 2 1 36 36 H 1.09000 * 113.75868 * 336.23430 * 13 12 2 37 37 H 1.09004 * 113.75827 * 107.59552 * 13 12 2 38 38 H 1.08993 * 109.47278 * 210.56263 * 15 14 13 39 39 H 1.08999 * 109.46951 * 330.56785 * 15 14 13 40 40 H 0.97001 * 119.99756 * 359.97438 * 18 16 15 41 41 H 0.96994 * 120.00140 * 180.02562 * 22 21 19 42 42 H 1.09001 * 113.76175 * 221.08714 * 27 14 13 43 43 H 1.08997 * 113.75844 * 89.71985 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1472 -0.0182 -2.3571 6 8 1.8574 1.1618 -2.4118 7 6 2.6374 -0.7121 -3.5591 8 6 2.8034 -0.0656 -4.8398 9 6 3.2585 -0.8841 -5.7809 10 16 3.5055 -2.4953 -5.1304 11 6 2.9858 -2.0267 -3.5763 12 6 2.0400 -0.7213 1.2492 13 6 1.9731 0.1326 2.5284 14 7 3.3107 -0.4203 2.8460 15 6 4.2037 0.6236 3.3665 16 6 4.0861 0.6826 4.8678 17 8 3.3322 -0.0705 5.4472 18 7 4.8179 1.5730 5.5666 19 6 4.7106 1.6270 6.9322 20 1 4.0392 0.9563 7.4481 21 6 5.4654 2.5445 7.6527 22 7 6.2818 3.3608 7.0250 23 14 5.3197 2.6177 9.5136 24 1 4.3402 1.6007 9.9737 25 1 6.6443 2.3407 10.1251 26 1 4.8590 3.9692 9.9213 27 6 3.5700 -0.6729 1.4114 28 1 -0.3634 -1.0277 0.0017 29 1 -0.3634 0.5153 0.8890 30 1 -0.3633 0.5124 -0.8909 31 1 2.2490 -1.6318 -1.1526 32 1 2.5799 0.9765 -5.0141 33 1 3.4510 -0.5978 -6.8044 34 1 2.9380 -2.6850 -2.7213 35 1 1.6178 -1.7195 1.3655 36 1 1.9751 1.2062 2.3403 37 1 1.1922 -0.1773 3.2229 38 1 5.2326 0.3919 3.0915 39 1 3.9223 1.5873 2.9419 40 1 5.4205 2.1755 5.1032 41 1 6.8089 4.0011 7.5280 42 1 4.0627 -1.6252 1.2152 43 1 4.0399 0.1647 0.8960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282690773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:24 Heat of formation + Delta-G solvation = -3.321122 kcal Electronic energy + Delta-G solvation = -25748.061166 eV Core-core repulsion = 21921.071716 eV Total energy + Delta-G solvation = -3826.989451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64200 -39.65867 -37.80031 -37.15412 -35.42289 -33.85309 -31.98430 -31.19849 -30.00483 -29.26804 -26.15284 -25.77765 -25.34567 -24.09047 -22.41327 -21.12035 -20.16892 -19.31595 -19.13363 -18.42196 -17.82371 -17.34322 -16.45692 -15.96455 -15.53749 -15.33634 -15.12230 -14.73562 -14.55263 -14.17559 -13.73990 -13.71539 -13.57388 -13.44401 -13.17194 -12.96319 -12.83572 -12.63165 -12.54574 -12.29254 -11.94948 -11.56893 -11.53320 -11.30222 -11.07298 -10.92148 -10.85214 -10.58074 -10.32200 -10.19326 -10.11043 -9.52399 -9.48132 -9.35968 -8.86418 -8.69510 -8.14199 -7.92795 -6.38619 -3.79282 0.33699 1.09676 1.47241 1.63681 2.84543 3.08889 3.18208 3.28337 3.35749 3.90148 3.95943 4.23393 4.27480 4.34163 4.53921 4.62387 4.81276 4.93763 4.98166 5.04509 5.14599 5.21541 5.26916 5.37470 5.42006 5.46363 5.52546 5.64288 5.67717 5.69925 5.74014 5.77778 5.85212 5.94591 6.01351 6.19401 6.28521 6.30928 6.59638 7.18396 7.23202 7.58190 7.96140 8.09599 8.65649 9.21784 9.58368 10.10808 10.79413 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.023706 B = 0.001858 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.838403 B =15070.090178 C =15366.338053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.151 3.849 3 H 0.090 0.910 4 N -0.717 5.717 5 C 0.577 3.423 6 O -0.535 6.535 7 C -0.153 4.153 8 C -0.086 4.086 9 C -0.237 4.237 10 S 0.185 5.815 11 C -0.212 4.212 12 C -0.127 4.127 13 C 0.024 3.976 14 N -0.449 5.449 15 C 0.010 3.990 16 C 0.447 3.553 17 O -0.576 6.576 18 N -0.568 5.568 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.020 3.980 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.005 3.995 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.398 0.602 32 H 0.154 0.846 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.391 0.609 41 H 0.270 0.730 42 H 0.087 0.913 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.224 -10.309 -27.037 29.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.046 3.954 3 H 0.108 0.892 4 N -0.368 5.368 5 C 0.363 3.637 6 O -0.413 6.413 7 C -0.171 4.171 8 C -0.114 4.114 9 C -0.371 4.371 10 S 0.451 5.549 11 C -0.351 4.351 12 C -0.146 4.146 13 C -0.106 4.106 14 N -0.171 5.171 15 C -0.122 4.122 16 C 0.232 3.768 17 O -0.459 6.459 18 N -0.205 5.205 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.181 4.181 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.124 4.124 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.233 0.767 32 H 0.172 0.828 33 H 0.187 0.813 34 H 0.188 0.812 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.224 0.776 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.227 -11.692 -26.712 29.816 hybrid contribution 0.119 2.122 0.842 2.286 sum -6.108 -9.570 -25.870 28.251 Atomic orbital electron populations 1.22140 0.94775 1.02277 1.02797 1.21087 0.94412 0.97214 0.82640 0.89155 1.45899 1.67414 1.13979 1.09499 1.17598 0.77444 0.86265 0.82422 1.90808 1.50171 1.15406 1.84907 1.20361 1.07940 0.93238 0.95581 1.21168 0.98955 1.01280 0.90043 1.25546 1.10226 0.97027 1.04347 1.83131 1.61792 1.10697 0.99317 1.25703 1.05695 0.99484 1.04184 1.23352 0.96501 1.00994 0.93758 1.23952 0.94580 0.97447 0.94608 1.68404 1.01815 1.33542 1.13309 1.22480 0.98680 0.94485 0.96586 1.19692 0.85010 0.84295 0.87795 1.90516 1.41029 1.43606 1.70736 1.41891 1.38524 1.32661 1.07454 1.19744 1.23258 1.18062 0.81573 0.87914 1.25258 0.96186 0.96010 1.00644 1.69619 1.26543 1.21768 1.36546 0.85805 0.78124 0.78121 0.82320 1.19236 1.20785 1.20792 1.23970 0.95494 1.02117 0.90866 0.92353 0.91071 0.92137 0.76729 0.82808 0.81258 0.81206 0.87729 0.91167 0.88714 0.89500 0.92420 0.77567 0.91979 0.89494 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.44 37.15 0.35 -1.15 16 2 C 0.15 1.49 2.29 -67.93 -0.16 1.34 16 3 H 0.09 1.08 7.48 -51.93 -0.39 0.70 16 4 N -0.72 -6.24 4.91 -54.96 -0.27 -6.51 16 5 C 0.58 6.34 7.76 -12.62 -0.10 6.24 16 6 O -0.54 -7.90 16.46 5.25 0.09 -7.81 16 7 C -0.15 -1.36 5.98 -104.63 -0.63 -1.98 16 8 C -0.09 -0.71 10.10 -39.02 -0.39 -1.10 16 9 C -0.24 -1.44 11.12 28.86 0.32 -1.12 16 10 S 0.19 0.96 23.02 -107.50 -2.48 -1.51 16 11 C -0.21 -1.34 10.38 29.93 0.31 -1.02 16 12 C -0.13 -1.32 3.35 -89.69 -0.30 -1.62 16 13 C 0.02 0.33 7.43 -2.64 -0.02 0.31 16 14 N -0.45 -7.36 5.65 -239.55 -1.35 -8.72 16 15 C 0.01 0.18 5.28 -4.97 -0.03 0.15 16 16 C 0.45 10.85 7.83 -10.98 -0.09 10.77 16 17 O -0.58 -16.08 16.01 5.55 0.09 -15.99 16 18 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 19 C -0.30 -8.43 9.68 -14.94 -0.14 -8.58 16 20 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 21 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 22 N -0.90 -24.98 13.05 55.50 0.72 -24.26 16 23 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.00 0.06 7.39 -2.76 -0.02 0.04 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.40 2.44 7.10 -40.82 -0.29 2.15 16 32 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.17 0.64 8.06 -52.48 -0.42 0.21 16 34 H 0.17 0.66 7.01 -52.48 -0.37 0.29 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.96 7.38 -51.93 -0.38 0.57 16 37 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 39 H 0.06 0.95 7.39 -51.93 -0.38 0.57 16 40 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 41 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -34.99 379.36 -9.40 -44.39 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.85 Total: 10.41 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.98 Total: 2.72 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.96 Total: -54.28 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.18 Total: -23.80 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.48 Total: -1.51 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.99 -9.40 -44.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282690773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.073 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds