Wall clock time and date at job start Tue Mar 31 2020 20:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47308 * 2 1 4 4 N 1.46498 * 109.47595 * 240.00248 * 2 1 3 5 5 C 1.34776 * 120.00446 * 85.00070 * 4 2 1 6 6 O 1.21634 * 119.99536 * 359.97438 * 5 4 2 7 7 C 1.47192 * 120.00406 * 180.02562 * 5 4 2 8 8 C 1.44421 * 123.45919 * 179.97438 * 7 5 4 9 9 C 1.32771 * 113.07979 * 179.97438 * 8 7 5 10 10 S 1.75501 * 110.57703 * 359.97438 * 9 8 7 11 11 C 1.36007 * 123.45974 * 359.69705 * 7 5 4 12 12 C 1.53002 * 109.47240 * 120.00019 * 2 1 3 13 13 C 1.53935 * 113.73511 * 281.87561 * 12 2 1 14 14 N 1.48181 * 86.10136 * 221.95483 * 13 12 2 15 15 C 1.46900 * 111.07275 * 137.52029 * 14 13 12 16 16 C 1.50702 * 109.47072 * 90.56558 * 15 14 13 17 17 O 1.21291 * 120.00413 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99802 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00018 * 179.97438 * 18 16 15 20 20 H 1.08013 * 119.99987 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00254 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00103 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00232 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47030 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47087 * 119.99924 * 23 21 19 26 26 H 1.48500 * 109.47438 * 240.00323 * 23 21 19 27 27 C 1.47957 * 90.80106 * 24.59891 * 14 13 12 28 28 H 1.09006 * 109.47380 * 180.09210 * 1 2 3 29 29 H 1.08990 * 109.47422 * 300.09596 * 1 2 3 30 30 H 1.09005 * 109.46802 * 60.09740 * 1 2 3 31 31 H 0.97007 * 120.00100 * 265.00571 * 4 2 1 32 32 H 1.07996 * 123.46083 * 359.95853 * 8 7 5 33 33 H 1.08009 * 124.71067 * 180.02562 * 9 8 7 34 34 H 1.08008 * 124.59134 * 0.02562 * 11 7 5 35 35 H 1.09002 * 112.93631 * 53.43953 * 12 2 1 36 36 H 1.09000 * 113.75868 * 336.23430 * 13 12 2 37 37 H 1.09004 * 113.75827 * 107.59552 * 13 12 2 38 38 H 1.08993 * 109.47278 * 210.56263 * 15 14 13 39 39 H 1.08999 * 109.46951 * 330.56785 * 15 14 13 40 40 H 0.97001 * 119.99756 * 359.97438 * 18 16 15 41 41 H 0.96994 * 120.00140 * 180.02562 * 22 21 19 42 42 H 1.09001 * 113.76175 * 221.08714 * 27 14 13 43 43 H 1.08997 * 113.75844 * 89.71985 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1472 -0.0182 -2.3571 6 8 1.8574 1.1618 -2.4118 7 6 2.6374 -0.7121 -3.5591 8 6 2.8034 -0.0656 -4.8398 9 6 3.2585 -0.8841 -5.7809 10 16 3.5055 -2.4953 -5.1304 11 6 2.9858 -2.0267 -3.5763 12 6 2.0400 -0.7213 1.2492 13 6 1.9731 0.1326 2.5284 14 7 3.3107 -0.4203 2.8460 15 6 4.2037 0.6236 3.3665 16 6 4.0861 0.6826 4.8678 17 8 3.3322 -0.0705 5.4472 18 7 4.8179 1.5730 5.5666 19 6 4.7106 1.6270 6.9322 20 1 4.0392 0.9563 7.4481 21 6 5.4654 2.5445 7.6527 22 7 6.2818 3.3608 7.0250 23 14 5.3197 2.6177 9.5136 24 1 4.3402 1.6007 9.9737 25 1 6.6443 2.3407 10.1251 26 1 4.8590 3.9692 9.9213 27 6 3.5700 -0.6729 1.4114 28 1 -0.3634 -1.0277 0.0017 29 1 -0.3634 0.5153 0.8890 30 1 -0.3633 0.5124 -0.8909 31 1 2.2490 -1.6318 -1.1526 32 1 2.5799 0.9765 -5.0141 33 1 3.4510 -0.5978 -6.8044 34 1 2.9380 -2.6850 -2.7213 35 1 1.6178 -1.7195 1.3655 36 1 1.9751 1.2062 2.3403 37 1 1.1922 -0.1773 3.2229 38 1 5.2326 0.3919 3.0915 39 1 3.9223 1.5873 2.9419 40 1 5.4205 2.1755 5.1032 41 1 6.8089 4.0011 7.5280 42 1 4.0627 -1.6252 1.2152 43 1 4.0399 0.1647 0.8960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282690773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:23 Heat of formation + Delta-G solvation = -30.204657 kcal Electronic energy + Delta-G solvation = -25749.226924 eV Core-core repulsion = 21921.071716 eV Total energy + Delta-G solvation = -3828.155208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61910 -40.67712 -39.59032 -37.80089 -36.39333 -35.89767 -33.33547 -32.80592 -31.01078 -30.10066 -27.46007 -27.09096 -26.13617 -25.49016 -23.32536 -21.96120 -21.08116 -20.98478 -20.01813 -19.86224 -18.97924 -18.02416 -17.83614 -17.21253 -16.75966 -16.55794 -16.34787 -16.01028 -15.76759 -15.63023 -15.20079 -14.86893 -14.47807 -14.17325 -14.05023 -13.89622 -13.78633 -13.70378 -13.52223 -13.36953 -13.34838 -12.99821 -12.88818 -12.47035 -12.41907 -12.13909 -12.09160 -11.89733 -11.85338 -11.62348 -11.51131 -10.95470 -10.39220 -10.23294 -10.02198 -9.97055 -9.63989 -9.32852 -8.47658 -5.96632 -0.18367 0.65461 0.98625 1.01827 1.35585 1.40335 1.55006 2.04294 2.09748 2.27653 2.35724 2.75734 3.18238 3.33500 3.41973 3.63403 3.85988 3.97084 4.11754 4.15612 4.20275 4.32208 4.33497 4.38880 4.46093 4.48900 4.49800 4.51956 4.74375 4.77302 4.82373 4.84914 4.96609 5.15826 5.19035 5.28701 5.30575 5.38991 5.41555 5.48602 5.88638 6.07263 6.53807 6.59458 7.12016 7.21557 7.55311 8.11539 8.70141 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.023706 B = 0.001858 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.838403 B =15070.090178 C =15366.338053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 H 0.068 0.932 4 N -0.703 5.703 5 C 0.575 3.425 6 O -0.585 6.585 7 C -0.184 4.184 8 C -0.114 4.114 9 C -0.236 4.236 10 S 0.239 5.761 11 C -0.205 4.205 12 C -0.098 4.098 13 C 0.014 3.986 14 N -0.480 5.480 15 C 0.023 3.977 16 C 0.443 3.557 17 O -0.617 6.617 18 N -0.577 5.577 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.016 4.016 22 N -0.922 5.922 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.270 1.270 27 C 0.012 3.988 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.414 0.586 32 H 0.140 0.860 33 H 0.191 0.809 34 H 0.196 0.804 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.395 0.605 41 H 0.277 0.723 42 H 0.107 0.893 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.585 -12.106 -28.306 31.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.053 3.947 3 H 0.086 0.914 4 N -0.354 5.354 5 C 0.362 3.638 6 O -0.466 6.466 7 C -0.203 4.203 8 C -0.142 4.142 9 C -0.371 4.371 10 S 0.504 5.496 11 C -0.343 4.343 12 C -0.117 4.117 13 C -0.115 4.115 14 N -0.203 5.203 15 C -0.109 4.109 16 C 0.230 3.770 17 O -0.502 6.502 18 N -0.215 5.215 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.116 4.116 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.251 0.749 32 H 0.158 0.842 33 H 0.208 0.792 34 H 0.213 0.787 35 H 0.141 0.859 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.092 0.908 40 H 0.229 0.771 41 H 0.087 0.913 42 H 0.125 0.875 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.568 -13.514 -28.008 31.593 hybrid contribution -0.066 2.591 1.149 2.836 sum -5.633 -10.923 -26.860 29.538 Atomic orbital electron populations 1.22096 0.94199 1.03184 1.02089 1.20878 0.94766 0.96152 0.82874 0.91411 1.45718 1.66644 1.14561 1.08501 1.17970 0.76662 0.85779 0.83341 1.90777 1.52564 1.17576 1.85708 1.20230 1.10679 0.94397 0.94945 1.21189 1.00878 1.01318 0.90849 1.25851 1.08706 0.97558 1.04971 1.83018 1.59856 1.08974 0.97707 1.26058 1.03652 0.98686 1.05937 1.23139 0.95641 1.00937 0.91985 1.23993 0.93264 0.98089 0.96175 1.68375 1.02438 1.33143 1.16311 1.22347 1.00431 0.96283 0.91828 1.20781 0.83259 0.82606 0.90347 1.90477 1.42435 1.44911 1.72425 1.41979 1.39164 1.33378 1.06983 1.19697 1.24358 1.19058 0.83048 0.90373 1.26071 0.95314 0.95077 1.05040 1.69681 1.26563 1.21826 1.38240 0.84852 0.78341 0.78280 0.76738 1.19767 1.19520 1.19571 1.24055 0.96566 1.03207 0.87822 0.90594 0.91096 0.93562 0.74882 0.84227 0.79215 0.78675 0.85896 0.91202 0.90263 0.87661 0.90771 0.77133 0.91318 0.87470 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.44 71.98 0.68 -2.12 16 2 C 0.16 2.97 2.29 44.99 0.10 3.08 16 3 H 0.07 1.64 7.48 -2.39 -0.02 1.62 16 4 N -0.70 -11.16 4.91 -446.03 -2.19 -13.35 16 5 C 0.58 12.52 7.76 86.60 0.67 13.19 16 6 O -0.58 -18.01 16.46 -4.14 -0.07 -18.08 16 7 C -0.18 -3.10 5.98 -19.87 -0.12 -3.22 16 8 C -0.11 -1.87 10.10 22.67 0.23 -1.64 16 9 C -0.24 -2.47 11.12 66.64 0.74 -1.73 16 10 S 0.24 1.75 23.02 -56.49 -1.30 0.45 16 11 C -0.20 -2.02 10.38 67.30 0.70 -1.32 16 12 C -0.10 -1.86 3.35 -10.15 -0.03 -1.89 16 13 C 0.01 0.39 7.43 86.37 0.64 1.03 16 14 N -0.48 -15.28 5.65 -911.80 -5.15 -20.43 16 15 C 0.02 0.82 5.28 85.56 0.45 1.27 16 16 C 0.44 21.89 7.83 87.66 0.69 22.58 16 17 O -0.62 -35.42 16.01 -3.07 -0.05 -35.47 16 18 N -0.58 -30.63 5.29 -306.97 -1.62 -32.25 16 19 C -0.33 -19.35 9.68 84.04 0.81 -18.53 16 20 H 0.08 4.86 7.16 -2.90 -0.02 4.84 16 21 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 22 N -0.92 -50.80 13.05 21.66 0.28 -50.52 16 23 Si 0.99 43.77 29.55 68.60 2.03 45.79 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 27 C 0.01 0.25 7.39 86.41 0.64 0.89 16 28 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 30 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.41 3.86 7.10 -92.70 -0.66 3.20 16 32 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.19 1.03 8.06 -2.91 -0.02 1.00 16 34 H 0.20 0.73 7.01 -2.91 -0.02 0.71 16 35 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 1.91 7.38 -2.39 -0.02 1.90 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.11 3.36 8.08 -2.39 -0.02 3.34 16 39 H 0.07 2.40 7.39 -2.39 -0.02 2.39 16 40 H 0.40 19.94 7.90 -92.71 -0.73 19.20 16 41 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 42 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 1.53 7.88 -2.39 -0.02 1.51 16 Total: -1.00 -78.47 379.36 -1.74 -80.21 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.34 Total: 32.45 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 6.67 Total: 11.20 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -8.68 Total: -116.55 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.12 Total: -53.55 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.30 Total: 0.45 kcal Total: -78.47 -1.74 -80.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282690773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.008 kcal (2) G-P(sol) polarization free energy of solvation -78.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds