Wall clock time and date at job start Tue Mar 31 2020 20:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47026 * 2 1 4 4 N 1.46494 * 109.46977 * 240.00344 * 2 1 3 5 5 C 1.34777 * 120.00588 * 84.99587 * 4 2 1 6 6 O 1.21285 * 119.99440 * 0.02562 * 5 4 2 7 7 C 1.50693 * 120.00634 * 179.97438 * 5 4 2 8 8 N 1.46501 * 109.47428 * 180.02562 * 7 5 4 9 9 C 1.34775 * 119.99938 * 179.97438 * 8 7 5 10 10 O 1.21702 * 120.00342 * 0.02562 * 9 8 7 11 11 C 1.46587 * 120.00028 * 179.97438 * 9 8 7 12 12 C 1.36643 * 125.45754 * 180.02562 * 11 9 8 13 13 C 1.37480 * 113.29571 * 179.97438 * 12 11 9 14 14 C 1.33819 * 115.09569 * 359.97438 * 13 12 11 15 15 S 1.70607 * 110.96051 * 0.02562 * 14 13 12 16 16 C 1.52999 * 109.46887 * 120.00221 * 2 1 3 17 17 C 1.53944 * 113.74205 * 281.81848 * 16 2 1 18 18 N 1.47811 * 86.03954 * 222.09071 * 17 16 2 19 19 C 1.36932 * 134.45910 * 204.65104 * 18 17 16 20 20 H 1.07999 * 120.00364 * 179.86312 * 19 18 17 21 21 C 1.38817 * 119.99769 * 359.85995 * 19 18 17 22 22 N 1.31610 * 119.99999 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99820 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46952 * 59.99993 * 23 21 19 25 25 H 1.48500 * 109.46847 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46785 * 299.99860 * 23 21 19 27 27 C 1.47584 * 91.05181 * 24.54941 * 18 17 16 28 28 H 1.08999 * 109.47433 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46809 * 300.06355 * 1 2 3 30 30 H 1.09003 * 109.47318 * 60.06078 * 1 2 3 31 31 H 0.97002 * 119.99937 * 265.00502 * 4 2 1 32 32 H 1.09001 * 109.47064 * 59.99904 * 7 5 4 33 33 H 1.09001 * 109.47242 * 300.00501 * 7 5 4 34 34 H 0.96995 * 119.99697 * 0.02562 * 8 7 5 35 35 H 1.07997 * 123.35474 * 0.25472 * 12 11 9 36 36 H 1.07995 * 122.45001 * 180.02562 * 13 12 11 37 37 H 1.08005 * 124.51739 * 180.02562 * 14 13 12 38 38 H 1.08993 * 112.94510 * 53.41502 * 16 2 1 39 39 H 1.09001 * 113.77178 * 336.35333 * 17 16 2 40 40 H 1.08998 * 113.77068 * 107.74777 * 17 16 2 41 41 H 0.97000 * 119.99888 * 179.97438 * 22 21 19 42 42 H 1.09002 * 113.77314 * 221.15591 * 27 18 17 43 43 H 1.09000 * 113.87231 * 89.76521 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8589 1.1587 -2.4115 7 6 2.6498 -0.7284 -3.5875 8 7 2.6995 0.2131 -4.7089 9 6 3.1219 -0.2024 -5.9194 10 8 3.4617 -1.3598 -6.0811 11 6 3.1711 0.7395 -7.0415 12 6 3.5785 0.4395 -8.3109 13 6 3.5239 1.5135 -9.1674 14 6 3.0868 2.6540 -8.6206 15 16 2.7142 2.4359 -6.9700 16 6 2.0400 -0.7213 1.2492 17 6 1.9744 0.1329 2.5283 18 7 3.3099 -0.4179 2.8416 19 6 4.0194 -0.6145 3.9961 20 1 5.0067 -1.0505 3.9556 21 6 3.4699 -0.2533 5.2186 22 7 2.2670 0.2786 5.2679 23 14 4.4382 -0.5209 6.7935 24 1 5.7080 0.2465 6.7303 25 1 3.6354 -0.0559 7.9531 26 1 4.7405 -1.9664 6.9491 27 6 3.5702 -0.6730 1.4115 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5149 0.8895 30 1 -0.3634 0.5129 -0.8905 31 1 2.2489 -1.6317 -1.1527 32 1 1.9776 -1.5507 -3.8325 33 1 3.6491 -1.1202 -3.3980 34 1 2.4290 1.1356 -4.5798 35 1 3.9061 -0.5443 -8.6124 36 1 3.8119 1.4418 -10.2058 37 1 2.9837 3.5879 -9.1532 38 1 1.6176 -1.7193 1.3658 39 1 1.9751 1.2065 2.3401 40 1 1.1954 -0.1777 3.2245 41 1 1.8828 0.5306 6.1222 42 1 4.0628 -1.6258 1.2177 43 1 4.0408 0.1623 0.8929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282740837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:29 Heat of formation + Delta-G solvation = 16.153137 kcal Electronic energy + Delta-G solvation = -25569.116635 eV Core-core repulsion = 21742.971651 eV Total energy + Delta-G solvation = -3826.144983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46037 -39.58983 -38.18234 -37.74828 -35.12853 -34.57457 -32.25498 -31.09891 -30.32675 -27.90222 -27.49635 -25.18302 -24.71706 -23.98702 -21.95938 -21.26822 -20.55360 -19.89937 -19.30831 -18.87209 -17.06321 -16.76333 -16.65573 -16.16466 -15.99884 -15.80238 -15.20189 -14.90462 -14.73963 -14.17163 -13.97511 -13.73363 -13.52959 -13.31287 -13.19872 -13.16392 -12.73274 -12.69131 -12.32980 -12.08941 -11.65249 -11.43455 -11.35797 -11.26103 -10.89760 -10.71732 -10.48833 -10.39818 -10.22931 -9.86018 -9.75665 -9.60090 -9.45448 -9.25541 -9.00829 -8.97874 -8.80754 -6.89706 -5.78374 -3.10520 0.10538 1.06699 1.47994 1.99687 2.46309 2.53957 2.86789 3.27677 3.38813 3.42903 3.44133 4.39329 4.43815 4.54088 4.62034 4.88642 5.03515 5.06005 5.07825 5.09979 5.13778 5.35686 5.50578 5.53215 5.58860 5.75026 5.76683 5.87581 5.90412 5.94721 6.01578 6.20801 6.31613 6.40049 6.49610 6.58676 6.73052 7.08688 7.19615 7.33103 7.43123 7.53822 7.78463 7.96556 8.08477 9.03170 9.69455 10.58111 11.38854 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.026129 B = 0.001837 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.353778 B =15235.257482 C =15361.356103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.710 5.710 5 C 0.507 3.493 6 O -0.542 6.542 7 C 0.099 3.901 8 N -0.714 5.714 9 C 0.594 3.406 10 O -0.530 6.530 11 C -0.270 4.270 12 C -0.054 4.054 13 C -0.152 4.152 14 C -0.231 4.231 15 S 0.214 5.786 16 C -0.148 4.148 17 C 0.176 3.824 18 N -0.612 5.612 19 C -0.224 4.224 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.125 3.875 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.403 0.597 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.410 0.590 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.170 0.830 38 H 0.090 0.910 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.254 0.746 42 H 0.041 0.959 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 1.697 -27.631 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.361 5.361 5 C 0.292 3.708 6 O -0.419 6.419 7 C -0.028 4.028 8 N -0.369 5.369 9 C 0.380 3.620 10 O -0.409 6.409 11 C -0.390 4.390 12 C -0.088 4.088 13 C -0.183 4.183 14 C -0.369 4.369 15 S 0.481 5.519 16 C -0.168 4.168 17 C 0.050 3.950 18 N -0.338 5.338 19 C -0.352 4.352 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.211 1.211 27 C -0.001 4.001 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.237 0.763 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.248 0.752 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.187 0.813 38 H 0.108 0.892 39 H 0.046 0.954 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.787 2.710 -26.217 26.504 hybrid contribution 1.115 -0.856 -0.268 1.431 sum -1.672 1.854 -26.485 26.603 Atomic orbital electron populations 1.22113 0.95251 1.01913 1.02360 1.21181 0.93904 0.97506 0.82818 0.89303 1.46049 1.66220 1.14289 1.09504 1.20380 0.78073 0.87475 0.84828 1.90698 1.50704 1.15798 1.84750 1.21135 1.04077 0.92671 0.84916 1.45544 1.67662 1.14934 1.08713 1.16876 0.77098 0.86740 0.81254 1.90844 1.48698 1.17776 1.83535 1.24574 1.16735 0.98650 0.99048 1.20816 0.96674 1.00752 0.90509 1.20065 1.04534 0.91778 1.01935 1.25409 1.07344 1.03831 1.00292 1.83324 1.59824 1.02830 1.05923 1.23878 0.97626 1.00827 0.94432 1.22229 0.89665 0.93855 0.89245 1.45970 1.16325 1.71876 0.99629 1.18974 0.98469 1.34929 0.82816 0.90349 1.24781 0.97071 1.01076 0.97509 1.69789 1.15368 1.47197 1.24535 0.86201 0.78892 0.77846 0.82824 1.21201 1.21529 1.21083 1.22540 0.93001 0.97702 0.86880 0.92648 0.90952 0.92827 0.76321 0.87998 0.87865 0.75161 0.82787 0.83623 0.81273 0.89210 0.95425 0.90659 0.93555 0.94078 0.95066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.44 37.16 0.35 -1.71 16 2 C 0.15 2.14 2.29 -67.93 -0.16 1.98 16 3 H 0.09 1.47 7.48 -51.93 -0.39 1.09 16 4 N -0.71 -8.09 4.94 -53.81 -0.27 -8.36 16 5 C 0.51 6.06 7.86 -10.99 -0.09 5.97 16 6 O -0.54 -8.19 15.33 5.55 0.09 -8.11 16 7 C 0.10 0.97 6.15 -5.20 -0.03 0.94 16 8 N -0.71 -7.61 5.52 -62.83 -0.35 -7.96 16 9 C 0.59 6.90 7.78 -12.89 -0.10 6.80 16 10 O -0.53 -7.54 16.84 5.19 0.09 -7.45 16 11 C -0.27 -2.61 6.45 -36.79 -0.24 -2.85 16 12 C -0.05 -0.45 10.01 -40.43 -0.40 -0.86 16 13 C -0.15 -0.99 10.15 -41.41 -0.42 -1.41 16 14 C -0.23 -1.41 10.92 29.18 0.32 -1.09 16 15 S 0.21 1.58 22.16 -107.50 -2.38 -0.80 16 16 C -0.15 -2.51 3.35 -89.69 -0.30 -2.81 16 17 C 0.18 3.97 6.98 -2.84 -0.02 3.95 16 18 N -0.61 -15.44 3.70 -177.68 -0.66 -16.10 16 19 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -27.10 11.39 55.49 0.63 -26.47 16 23 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.12 2.44 8.38 -2.96 -0.02 2.41 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.98 8.09 -51.92 -0.42 0.56 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.40 3.60 8.60 -40.82 -0.35 3.25 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.41 4.31 6.55 -40.82 -0.27 4.04 16 35 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.17 0.62 8.06 -52.48 -0.42 0.19 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 40 H 0.08 1.88 7.17 -51.93 -0.37 1.50 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -34.31 379.91 -9.50 -43.81 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.99 Total: 4.09 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.37 Total: 4.58 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.64 Total: -58.88 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.17 Total: -15.56 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.38 Total: -0.80 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.31 -9.50 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282740837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.965 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds