Wall clock time and date at job start Tue Mar 31 2020 20:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.46967 * 2 1 4 4 N 1.46494 * 109.47112 * 119.99559 * 2 1 3 5 5 C 1.34778 * 120.00352 * 275.00168 * 4 2 1 6 6 O 1.21279 * 119.99770 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00296 * 179.97438 * 5 4 2 8 8 N 1.46494 * 109.47476 * 179.97438 * 7 5 4 9 9 C 1.34777 * 120.00241 * 179.97438 * 8 7 5 10 10 O 1.21702 * 120.00111 * 0.02562 * 9 8 7 11 11 C 1.46584 * 119.99934 * 180.02562 * 9 8 7 12 12 C 1.36652 * 125.45815 * 180.02562 * 11 9 8 13 13 C 1.37475 * 113.29531 * 179.97438 * 12 11 9 14 14 C 1.33814 * 115.10326 * 0.02562 * 13 12 11 15 15 S 1.70613 * 110.95401 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.47561 * 240.00191 * 2 1 3 17 17 C 1.53939 * 113.74462 * 156.67445 * 16 2 1 18 18 N 1.47582 * 86.11794 * 222.04250 * 17 16 2 19 19 C 1.36936 * 134.49979 * 204.63731 * 18 17 16 20 20 H 1.07997 * 120.00301 * 180.02562 * 19 18 17 21 21 C 1.38818 * 119.99210 * 0.02562 * 19 18 17 22 22 N 1.31614 * 120.00279 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99408 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47523 * 60.00141 * 23 21 19 25 25 H 1.48502 * 109.46795 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47258 * 299.99904 * 23 21 19 27 27 C 1.47590 * 91.01469 * 24.63999 * 18 17 16 28 28 H 1.09009 * 109.46967 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47656 * 299.99955 * 1 2 3 30 30 H 1.08999 * 109.47516 * 60.00349 * 1 2 3 31 31 H 0.97003 * 120.00234 * 95.00820 * 4 2 1 32 32 H 1.09006 * 109.47029 * 60.00129 * 7 5 4 33 33 H 1.08995 * 109.47722 * 300.00642 * 7 5 4 34 34 H 0.97008 * 119.99920 * 0.02562 * 8 7 5 35 35 H 1.07998 * 123.35183 * 0.25097 * 12 11 9 36 36 H 1.07999 * 122.44590 * 180.02562 * 13 12 11 37 37 H 1.07998 * 124.52149 * 179.97438 * 14 13 12 38 38 H 1.09004 * 112.93915 * 288.41004 * 16 2 1 39 39 H 1.08996 * 113.76844 * 336.34343 * 17 16 2 40 40 H 1.09001 * 113.76995 * 107.74331 * 17 16 2 41 41 H 0.97007 * 119.99629 * 179.97438 * 22 21 19 42 42 H 1.08997 * 113.76876 * 221.06158 * 27 18 17 43 43 H 1.08995 * 113.76814 * 89.65522 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8581 1.1585 2.4117 7 6 2.6488 -0.7286 3.5878 8 7 2.6987 0.2129 4.7090 9 6 3.1194 -0.2030 5.9200 10 8 3.4581 -1.3606 6.0820 11 6 3.1688 0.7390 7.0420 12 6 3.5755 0.4390 8.3117 13 6 3.5225 1.5134 9.1677 14 6 3.0873 2.6543 8.6205 15 16 2.7147 2.4361 6.9699 16 6 2.0401 -0.7212 -1.2492 17 6 3.4666 -0.3145 -1.6607 18 7 2.9584 -0.3120 -3.0462 19 6 3.5329 -0.4678 -4.2795 20 1 2.9224 -0.4220 -5.1692 21 6 4.8999 -0.6845 -4.3859 22 7 5.6437 -0.7408 -3.3015 23 14 5.6836 -0.8963 -6.0683 24 1 5.4497 0.3244 -6.8807 25 1 7.1441 -1.1139 -5.9100 26 1 5.0802 -2.0687 -6.7514 27 6 1.5823 -0.0740 -2.5689 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.2491 -1.6316 1.1527 32 1 3.6479 -1.1211 3.3987 33 1 1.9760 -1.5504 3.8326 34 1 2.4283 1.1356 4.5800 35 1 3.9097 -0.5432 8.6115 36 1 3.8109 1.4417 10.2060 37 1 2.9856 3.5886 9.1526 38 1 1.8828 -1.7992 -1.2114 39 1 3.7640 0.6702 -1.3000 40 1 4.2152 -1.0831 -1.4687 41 1 6.5989 -0.8926 -3.3760 42 1 0.8265 -0.6507 -3.1021 43 1 1.3262 0.9812 -2.4750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282740839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:31 Heat of formation + Delta-G solvation = 16.567590 kcal Electronic energy + Delta-G solvation = -25617.921833 eV Core-core repulsion = 21791.794822 eV Total energy + Delta-G solvation = -3826.127011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41464 -39.55119 -38.20094 -37.72116 -35.11313 -34.53484 -32.28899 -31.03129 -30.27572 -27.85799 -27.54082 -25.17989 -24.72075 -23.94693 -21.95199 -21.26302 -20.53173 -19.88256 -19.27216 -18.79178 -17.02815 -16.69794 -16.65994 -16.13430 -15.99990 -15.75474 -15.18752 -14.91605 -14.80577 -14.10605 -13.86175 -13.68787 -13.53452 -13.26374 -13.13200 -13.11844 -12.66853 -12.64902 -12.47337 -12.12483 -11.71059 -11.37574 -11.32652 -11.32358 -10.92346 -10.75608 -10.45090 -10.39778 -10.11516 -9.82866 -9.80099 -9.55079 -9.43647 -9.21759 -8.97463 -8.93008 -8.80882 -6.89387 -5.77953 -3.10387 0.14069 1.10024 1.51284 2.03305 2.50649 2.58686 2.91163 3.32053 3.38841 3.42892 3.44267 4.43147 4.44342 4.57573 4.65664 4.91935 5.05477 5.08744 5.09711 5.16961 5.23913 5.24481 5.50404 5.56571 5.60163 5.74011 5.78453 5.88729 5.92744 5.95222 5.97273 6.18179 6.30508 6.35792 6.51473 6.60491 6.73283 7.13433 7.20899 7.33385 7.47026 7.54269 7.83248 7.97130 8.12467 9.03566 9.69718 10.58573 11.38993 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.001974 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.549721 B =14181.555705 C =14735.257740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.709 5.709 5 C 0.509 3.491 6 O -0.543 6.543 7 C 0.099 3.901 8 N -0.713 5.713 9 C 0.594 3.406 10 O -0.530 6.530 11 C -0.269 4.269 12 C -0.054 4.054 13 C -0.152 4.152 14 C -0.231 4.231 15 S 0.213 5.787 16 C -0.147 4.147 17 C 0.170 3.830 18 N -0.612 5.612 19 C -0.224 4.224 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.130 3.870 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.404 0.596 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.410 0.590 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.170 0.830 38 H 0.089 0.911 39 H 0.025 0.975 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.045 0.955 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.692 3.578 23.929 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.359 5.359 5 C 0.294 3.706 6 O -0.421 6.421 7 C -0.028 4.028 8 N -0.368 5.368 9 C 0.380 3.620 10 O -0.408 6.408 11 C -0.389 4.389 12 C -0.088 4.088 13 C -0.183 4.183 14 C -0.369 4.369 15 S 0.480 5.520 16 C -0.167 4.167 17 C 0.045 3.955 18 N -0.338 5.338 19 C -0.352 4.352 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.003 3.997 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.238 0.762 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.248 0.752 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.187 0.813 38 H 0.107 0.893 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.932 4.517 22.647 24.760 hybrid contribution 1.089 -0.836 0.233 1.392 sum -7.843 3.681 22.879 24.465 Atomic orbital electron populations 1.22134 0.95502 1.01868 1.02175 1.21157 0.93568 0.97628 0.83069 0.89300 1.46006 1.66194 1.14336 1.09411 1.20368 0.77949 0.87432 0.84848 1.90687 1.50773 1.15806 1.84822 1.21138 1.04217 0.92620 0.84852 1.45540 1.67701 1.14902 1.08682 1.16874 0.77124 0.86752 0.81257 1.90846 1.48647 1.17764 1.83540 1.24580 1.16704 0.98604 0.99022 1.20818 0.96692 1.00764 0.90513 1.20061 1.04530 0.91764 1.01938 1.25401 1.07432 1.03807 1.00281 1.83312 1.59927 1.02803 1.05917 1.23844 1.01005 0.99758 0.92121 1.22269 0.91671 0.98278 0.83301 1.45936 1.02442 1.83294 1.02151 1.18976 0.91084 1.42225 0.82896 0.90309 1.24791 0.95975 1.02369 0.97348 1.69802 1.05268 1.55493 1.26306 0.86199 0.78337 0.77998 0.83214 1.21189 1.21552 1.21076 1.22499 0.89758 0.96740 0.90667 0.92628 0.92787 0.91285 0.76184 0.87713 0.88006 0.75188 0.82778 0.83637 0.81293 0.89268 0.95689 0.90982 0.93585 0.93718 0.94763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.29 37.16 0.35 -1.60 16 2 C 0.15 2.14 2.42 -67.94 -0.16 1.98 16 3 H 0.09 1.48 7.37 -51.92 -0.38 1.10 16 4 N -0.71 -8.55 5.08 -53.81 -0.27 -8.83 16 5 C 0.51 6.40 7.86 -10.99 -0.09 6.32 16 6 O -0.54 -8.44 15.33 5.56 0.09 -8.35 16 7 C 0.10 1.04 6.15 -5.20 -0.03 1.01 16 8 N -0.71 -8.04 5.52 -62.84 -0.35 -8.38 16 9 C 0.59 7.24 7.78 -12.89 -0.10 7.14 16 10 O -0.53 -7.86 16.84 5.19 0.09 -7.78 16 11 C -0.27 -2.72 6.45 -36.79 -0.24 -2.96 16 12 C -0.05 -0.48 10.01 -40.43 -0.40 -0.89 16 13 C -0.15 -1.04 10.15 -41.41 -0.42 -1.46 16 14 C -0.23 -1.49 10.92 29.18 0.32 -1.17 16 15 S 0.21 1.66 22.16 -107.50 -2.38 -0.72 16 16 C -0.15 -2.51 3.50 -89.70 -0.31 -2.82 16 17 C 0.17 3.86 7.07 -2.98 -0.02 3.84 16 18 N -0.61 -15.46 3.70 -177.91 -0.66 -16.11 16 19 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -27.25 11.38 55.49 0.63 -26.62 16 23 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.13 2.53 7.56 -2.97 -0.02 2.51 16 28 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.83 7.43 -51.93 -0.39 0.45 16 31 H 0.40 3.97 8.60 -40.82 -0.35 3.62 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.41 4.51 6.55 -40.82 -0.27 4.25 16 35 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 39 H 0.03 0.60 7.96 -51.93 -0.41 0.19 16 40 H 0.07 1.81 7.15 -51.93 -0.37 1.44 16 41 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.65 8.06 -51.93 -0.42 0.23 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -34.53 378.54 -9.51 -44.04 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.94 Total: 4.84 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -1.40 Total: 5.12 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.65 Total: -59.94 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.17 Total: -16.13 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.38 Total: -0.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.53 -9.51 -44.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282740839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.606 kcal (2) G-P(sol) polarization free energy of solvation -34.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds