Wall clock time and date at job start Tue Mar 31 2020 20:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46657 * 2 1 4 4 N 1.46497 * 109.47264 * 239.99732 * 2 1 3 5 5 C 1.34772 * 119.99733 * 84.99586 * 4 2 1 6 6 O 1.21344 * 120.00677 * 0.02562 * 5 4 2 7 7 C 1.49455 * 119.99662 * 179.97438 * 5 4 2 8 8 O 1.21348 * 120.00225 * 6.77425 * 7 5 4 9 9 N 1.34776 * 119.99951 * 186.76517 * 7 5 4 10 10 C 1.46925 * 120.63055 * 188.38873 * 9 7 5 11 11 C 1.52754 * 109.01118 * 233.58857 * 10 9 7 12 12 C 1.53039 * 109.38807 * 305.58950 * 11 10 9 13 13 C 1.50697 * 109.45648 * 181.25430 * 12 11 10 14 14 H 1.08000 * 119.99979 * 239.94681 * 13 12 11 15 15 C 1.37878 * 120.00130 * 59.93381 * 13 12 11 16 16 N 1.31519 * 119.99436 * 0.02562 * 15 13 12 17 17 Si 1.86789 * 120.00130 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47140 * 90.00586 * 17 15 13 19 19 H 1.48504 * 109.47220 * 210.00122 * 17 15 13 20 20 H 1.48500 * 109.47460 * 330.00334 * 17 15 13 21 21 C 1.53047 * 109.53568 * 61.23587 * 12 11 10 22 22 C 1.46920 * 120.63092 * 8.67885 * 9 7 5 23 23 C 1.50700 * 109.46753 * 119.99508 * 2 1 3 24 24 C 1.35142 * 127.24658 * 259.97872 * 23 2 1 25 25 C 1.37813 * 114.75702 * 180.02562 * 24 23 2 26 26 N 1.30085 * 116.88286 * 359.97438 * 25 24 23 27 27 S 1.69604 * 107.15086 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46887 * 300.00274 * 1 2 3 29 29 H 1.09003 * 109.46992 * 60.00107 * 1 2 3 30 30 H 1.08995 * 109.47240 * 180.02562 * 1 2 3 31 31 H 0.96999 * 119.99594 * 265.00459 * 4 2 1 32 32 H 1.09003 * 109.58694 * 353.42647 * 10 9 7 33 33 H 1.09001 * 109.58446 * 113.85136 * 10 9 7 34 34 H 1.09003 * 109.56630 * 185.55393 * 11 10 9 35 35 H 1.08999 * 109.36517 * 65.50336 * 11 10 9 36 36 H 1.09005 * 109.46220 * 301.22463 * 12 11 10 37 37 H 0.97003 * 119.99719 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.49641 * 178.68521 * 21 12 11 39 39 H 1.08999 * 109.52043 * 58.60454 * 21 12 11 40 40 H 1.09003 * 109.58795 * 246.15290 * 22 9 7 41 41 H 1.09003 * 109.58824 * 6.43189 * 22 9 7 42 42 H 1.07992 * 122.62287 * 0.02562 * 24 23 2 43 43 H 1.07994 * 121.55927 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8588 1.1591 -2.4116 7 6 2.6458 -0.7228 -3.5771 8 8 2.8179 -1.9238 -3.5566 9 7 2.9042 -0.0242 -4.7003 10 6 3.2175 -0.7170 -5.9575 11 6 4.5364 -0.1775 -6.5078 12 6 4.4493 1.3452 -6.6338 13 6 5.7386 1.8761 -7.2055 14 1 6.3299 2.5814 -6.6404 15 6 6.1635 1.4613 -8.4498 16 7 5.4432 0.6027 -9.1380 17 14 7.7619 2.1188 -9.1581 18 1 8.8835 1.2333 -8.7543 19 1 7.6689 2.1553 -10.6398 20 1 8.0042 3.4905 -8.6434 21 6 4.2124 1.9603 -5.2526 22 6 2.8843 1.4449 -4.6894 23 6 2.0323 -0.7103 1.2305 24 6 2.4814 -0.1472 2.3740 25 6 2.8814 -1.0442 3.3407 26 7 2.7824 -2.3078 3.0478 27 16 2.1550 -2.4089 1.4753 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.2490 -1.6318 -1.1524 32 1 3.3111 -1.7870 -5.7715 33 1 2.4223 -0.5381 -6.6813 34 1 4.7284 -0.6133 -7.4883 35 1 5.3464 -0.4405 -5.8275 36 1 3.6234 1.6083 -7.2948 37 1 5.7419 0.3111 -10.0137 38 1 4.1738 3.0461 -5.3397 39 1 5.0253 1.6777 -4.5837 40 1 2.0614 1.8038 -5.3076 41 1 2.7556 1.8010 -3.6672 42 1 2.5235 0.9222 2.5189 43 1 3.2594 -0.7136 4.2968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335012323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:00 Heat of formation + Delta-G solvation = -18.149615 kcal Electronic energy + Delta-G solvation = -26672.750102 eV Core-core repulsion = 22845.117639 eV Total energy + Delta-G solvation = -3827.632462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.88313 -39.38619 -38.61472 -37.09079 -36.19284 -33.55639 -32.22214 -31.11900 -30.29338 -29.95607 -26.70218 -25.85000 -24.76132 -23.01623 -22.56148 -21.66851 -20.99726 -19.96487 -19.02372 -18.29725 -17.37387 -16.86572 -16.42075 -16.09973 -15.87348 -15.50894 -14.89541 -14.78408 -14.56176 -14.08621 -14.02809 -13.86875 -13.55222 -13.30060 -13.14410 -12.77458 -12.74418 -12.53057 -12.29540 -12.21005 -11.87040 -11.43272 -11.22982 -11.07454 -10.93080 -10.87478 -10.63314 -10.40447 -10.10928 -10.08753 -9.62937 -9.58783 -9.56019 -9.15815 -8.96874 -8.73090 -8.38650 -8.12989 -6.02738 -4.09087 0.20968 0.99952 1.43686 1.48583 2.00178 2.38302 3.28425 3.29347 3.35732 3.38588 3.61524 3.84671 4.38869 4.41369 4.59006 4.70229 4.75419 4.79399 5.17283 5.26940 5.29315 5.36198 5.43271 5.62213 5.75536 5.83894 5.89954 5.93911 6.13575 6.14000 6.25693 6.35909 6.49346 6.63845 6.73669 6.88112 6.96612 7.13893 7.28112 7.61343 7.68531 7.74749 7.92006 8.04059 8.17411 8.40158 8.94299 9.56020 11.02795 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022111 B = 0.002354 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.045313 B =11894.176429 C =12042.493844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.219 3.781 3 H 0.116 0.884 4 N -0.705 5.705 5 C 0.517 3.483 6 O -0.504 6.504 7 C 0.499 3.501 8 O -0.537 6.537 9 N -0.560 5.560 10 C 0.105 3.895 11 C -0.123 4.123 12 C 0.046 3.954 13 C -0.512 4.512 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.124 4.124 22 C 0.069 3.931 23 C -0.183 4.183 24 C -0.191 4.191 25 C 0.090 3.910 26 N -0.456 5.456 27 S 0.270 5.730 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.411 0.589 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.039 0.961 36 H 0.028 0.972 37 H 0.261 0.739 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.124 0.876 42 H 0.161 0.839 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.305 -2.000 21.730 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.112 3.888 3 H 0.134 0.866 4 N -0.360 5.360 5 C 0.299 3.701 6 O -0.380 6.380 7 C 0.280 3.720 8 O -0.416 6.416 9 N -0.292 5.292 10 C -0.016 4.016 11 C -0.161 4.161 12 C 0.028 3.972 13 C -0.550 4.550 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.162 4.162 22 C -0.052 4.052 23 C -0.314 4.314 24 C -0.227 4.227 25 C -0.107 4.107 26 N -0.277 5.277 27 S 0.422 5.578 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.249 0.751 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.141 0.859 42 H 0.179 0.821 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.446 -4.080 21.327 24.096 hybrid contribution 1.202 1.813 -0.091 2.177 sum -9.244 -2.267 21.237 23.272 Atomic orbital electron populations 1.22239 0.92659 1.03290 1.03803 1.19291 0.94761 0.96466 0.78270 0.86640 1.45978 1.66542 1.14931 1.08558 1.20512 0.78244 0.86796 0.84505 1.90531 1.48255 1.15214 1.83963 1.19761 0.80666 0.87223 0.84356 1.90724 1.53144 1.14228 1.83483 1.48209 1.63546 1.08609 1.08817 1.22014 1.00073 0.96957 0.82564 1.21956 0.92123 0.99941 1.02124 1.18676 0.97231 0.91041 0.90287 1.21193 1.06549 1.25566 1.01695 0.92698 1.24971 0.97045 0.95078 0.96929 1.69837 1.38121 1.32289 1.12791 0.86610 0.83938 0.79372 0.78170 1.20750 1.21247 1.19968 1.22023 0.94500 0.99954 0.99710 1.22922 0.99349 0.77356 1.05619 1.25621 1.04310 1.01172 1.00316 1.21335 1.05031 1.03534 0.92756 1.22886 0.98144 0.88094 1.01570 1.76841 1.21240 1.21577 1.08028 1.84263 1.57632 1.02984 1.12914 0.90682 0.90424 0.91727 0.75149 0.90295 0.91518 0.87525 0.94216 0.95386 0.92946 0.91882 0.93136 0.91799 0.85889 0.82113 0.79618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.47 37.16 0.35 -0.83 16 2 C 0.22 1.87 3.07 -69.08 -0.21 1.66 16 3 H 0.12 1.00 7.58 -51.93 -0.39 0.61 16 4 N -0.71 -7.78 5.06 -55.36 -0.28 -8.06 16 5 C 0.52 7.28 7.71 -11.59 -0.09 7.19 16 6 O -0.50 -7.50 12.84 5.50 0.07 -7.43 16 7 C 0.50 8.48 7.73 -11.58 -0.09 8.39 16 8 O -0.54 -9.94 15.93 5.50 0.09 -9.85 16 9 N -0.56 -10.18 2.98 -173.54 -0.52 -10.70 16 10 C 0.10 2.04 6.41 -3.94 -0.03 2.02 16 11 C -0.12 -2.81 5.14 -26.84 -0.14 -2.95 16 12 C 0.05 1.10 2.07 -91.73 -0.19 0.91 16 13 C -0.51 -13.66 8.56 -34.44 -0.29 -13.95 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -24.68 11.31 55.43 0.63 -24.05 16 17 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 21 C -0.12 -2.49 5.30 -26.61 -0.14 -2.63 16 22 C 0.07 1.20 5.99 -3.71 -0.02 1.18 16 23 C -0.18 -1.47 5.50 -35.41 -0.19 -1.66 16 24 C -0.19 -1.27 10.17 -40.84 -0.42 -1.68 16 25 C 0.09 0.64 11.27 -18.45 -0.21 0.43 16 26 N -0.46 -4.43 12.09 28.86 0.35 -4.08 16 27 S 0.27 2.41 22.84 -107.50 -2.46 -0.05 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.41 4.44 7.30 -40.82 -0.30 4.14 16 32 H 0.08 1.52 7.00 -51.93 -0.36 1.15 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.11 2.70 6.03 -51.93 -0.31 2.39 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.12 2.05 4.31 -54.80 -0.24 1.81 16 42 H 0.16 0.69 8.06 -52.49 -0.42 0.26 16 43 H 0.19 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -30.21 365.26 -9.19 -39.40 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.80 Total: 3.76 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.76 Total: -0.38 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.18 Total: -46.89 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.16 Total: -17.28 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.46 Total: -0.05 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.21 -9.19 -39.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335012323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.253 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds