Wall clock time and date at job start Tue Mar 31 2020 20:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46453 * 2 1 4 4 N 1.46496 * 109.47398 * 120.00010 * 2 1 3 5 5 C 1.34771 * 120.00233 * 275.00207 * 4 2 1 6 6 O 1.21348 * 120.00240 * 359.97438 * 5 4 2 7 7 C 1.49452 * 119.99903 * 180.02562 * 5 4 2 8 8 O 1.21354 * 119.99772 * 353.06708 * 7 5 4 9 9 N 1.34776 * 119.99924 * 173.07148 * 7 5 4 10 10 C 1.46924 * 120.63173 * 1.66963 * 9 7 5 11 11 C 1.52754 * 109.01027 * 233.58268 * 10 9 7 12 12 C 1.53037 * 109.38628 * 305.59270 * 11 10 9 13 13 C 1.50706 * 109.45272 * 181.25251 * 12 11 10 14 14 H 1.07997 * 120.00028 * 239.93999 * 13 12 11 15 15 C 1.37875 * 119.99970 * 59.93374 * 13 12 11 16 16 N 1.31516 * 119.99809 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00014 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46956 * 60.00004 * 17 15 13 19 19 H 1.48505 * 109.47020 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47069 * 299.99723 * 17 15 13 21 21 C 1.53043 * 109.54021 * 61.23560 * 12 11 10 22 22 C 1.46930 * 120.62784 * 181.95042 * 9 7 5 23 23 C 1.50701 * 109.47013 * 240.00671 * 2 1 3 24 24 C 1.35140 * 127.24867 * 99.99190 * 23 2 1 25 25 C 1.37812 * 114.75841 * 179.73796 * 24 23 2 26 26 N 1.30079 * 116.88142 * 0.02562 * 25 24 23 27 27 S 1.69604 * 107.15247 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.46846 * 299.99409 * 1 2 3 29 29 H 1.09001 * 109.47502 * 59.99467 * 1 2 3 30 30 H 1.09006 * 109.46920 * 179.97438 * 1 2 3 31 31 H 0.97006 * 119.99241 * 95.00306 * 4 2 1 32 32 H 1.09004 * 109.58546 * 353.42439 * 10 9 7 33 33 H 1.09003 * 109.58447 * 113.84273 * 10 9 7 34 34 H 1.08999 * 109.56753 * 185.55284 * 11 10 9 35 35 H 1.09004 * 109.35989 * 65.49898 * 11 10 9 36 36 H 1.09000 * 109.46004 * 301.21570 * 12 11 10 37 37 H 0.97001 * 119.99841 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.49742 * 178.68438 * 21 12 11 39 39 H 1.09003 * 109.52222 * 58.60691 * 21 12 11 40 40 H 1.09002 * 109.58744 * 246.15613 * 22 9 7 41 41 H 1.08995 * 109.58544 * 6.43911 * 22 9 7 42 42 H 1.08001 * 122.61939 * 359.72473 * 24 23 2 43 43 H 1.07995 * 121.55422 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8589 1.1592 2.4116 7 6 2.6459 -0.7228 3.5771 8 8 2.8153 -1.9243 3.5574 9 7 2.9076 -0.0236 4.6993 10 6 2.6729 1.4258 4.7501 11 6 3.9531 2.1215 5.2087 12 6 4.4152 1.5124 6.5344 13 6 5.6612 2.2184 7.0038 14 1 6.5757 1.6620 7.1470 15 6 5.6337 3.5746 7.2504 16 7 4.5199 4.2521 7.0765 17 14 7.1782 4.4498 7.8316 18 1 8.2490 4.2917 6.8149 19 1 6.8866 5.8932 8.0239 20 1 7.6266 3.8602 9.1187 21 6 4.7158 0.0248 6.3371 22 6 3.4388 -0.6956 5.8931 23 6 2.0323 -0.7103 -1.2306 24 6 2.4810 -0.1471 -2.3742 25 6 2.8860 -1.0440 -3.3389 26 7 2.7915 -2.3075 -3.0442 27 16 2.1608 -2.4087 -1.4731 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2492 -1.6318 1.1524 32 1 2.3976 1.7864 3.7589 33 1 1.8703 1.6415 5.4554 34 1 3.7617 3.1859 5.3445 35 1 4.7288 1.9841 4.4553 36 1 3.6293 1.6281 7.2807 37 1 4.5006 5.2063 7.2496 38 1 5.0671 -0.4031 7.2760 39 1 5.4845 -0.0934 5.5733 40 1 2.7000 -0.6564 6.6936 41 1 3.6664 -1.7349 5.6565 42 1 2.5189 0.9222 -2.5207 43 1 3.2642 -0.7133 -4.2949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335012328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:01 Heat of formation + Delta-G solvation = -32.686627 kcal Electronic energy + Delta-G solvation = -26778.659591 eV Core-core repulsion = 22950.396757 eV Total energy + Delta-G solvation = -3828.262835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.13167 -40.27027 -39.63081 -38.61957 -37.17354 -35.32112 -33.14759 -32.95601 -31.75909 -30.62752 -28.41047 -26.72850 -25.98415 -24.34589 -24.01630 -22.86707 -21.98523 -21.09679 -20.35425 -19.19880 -18.60368 -18.37582 -17.92952 -17.19622 -16.83967 -16.74065 -16.46998 -15.79253 -15.69175 -15.37555 -15.18235 -14.78419 -14.67477 -14.63157 -14.47142 -14.12765 -13.99275 -13.81975 -13.45827 -13.21645 -13.02525 -12.81228 -12.79956 -12.53565 -12.32294 -12.13883 -12.06977 -11.92042 -11.50045 -11.48035 -11.07770 -11.00777 -10.82296 -10.44937 -10.44338 -9.96946 -9.75866 -9.70555 -8.06697 -6.20511 -0.38920 0.24591 0.38182 0.84171 1.17776 1.43117 1.43330 1.51015 1.54347 2.04294 2.40655 2.44574 3.15920 3.19748 3.20771 3.97259 4.09745 4.13666 4.18164 4.25858 4.27179 4.31748 4.50661 4.52418 4.58990 4.74666 4.77080 4.80697 4.90573 4.92113 4.96933 5.14082 5.18892 5.19976 5.30882 5.39309 5.49537 5.59793 5.63480 5.85406 5.98060 6.12003 6.26293 6.38993 6.60242 6.83812 6.89683 7.47091 8.96713 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.002535 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.102737 B =11042.101604 C =11442.856756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.218 3.782 3 H 0.118 0.882 4 N -0.689 5.689 5 C 0.522 3.478 6 O -0.510 6.510 7 C 0.499 3.501 8 O -0.551 6.551 9 N -0.566 5.566 10 C 0.059 3.941 11 C -0.110 4.110 12 C 0.042 3.958 13 C -0.535 4.535 14 H 0.050 0.950 15 C 0.015 3.985 16 N -0.913 5.913 17 Si 0.950 3.050 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.113 4.113 22 C 0.111 3.889 23 C -0.187 4.187 24 C -0.182 4.182 25 C 0.096 3.904 26 N -0.486 5.486 27 S 0.240 5.760 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.414 0.586 32 H 0.152 0.848 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.003 0.997 37 H 0.261 0.739 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.189 0.811 43 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.707 -8.757 -19.670 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.113 3.887 3 H 0.136 0.864 4 N -0.343 5.343 5 C 0.304 3.696 6 O -0.388 6.388 7 C 0.281 3.719 8 O -0.431 6.431 9 N -0.297 5.297 10 C -0.061 4.061 11 C -0.149 4.149 12 C 0.024 3.976 13 C -0.573 4.573 14 H 0.068 0.932 15 C -0.184 4.184 16 N -0.552 5.552 17 Si 0.776 3.224 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.151 4.151 22 C -0.011 4.011 23 C -0.318 4.318 24 C -0.217 4.217 25 C -0.101 4.101 26 N -0.307 5.307 27 S 0.392 5.608 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.252 0.748 32 H 0.168 0.832 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.021 0.979 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.206 0.794 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -8.922 -10.590 -19.452 23.877 hybrid contribution 1.188 2.091 0.401 2.438 sum -7.734 -8.500 -19.051 22.249 Atomic orbital electron populations 1.22217 0.91423 1.03643 1.04289 1.19462 0.95676 0.96269 0.77339 0.86439 1.45962 1.65130 1.14909 1.08326 1.19993 0.78401 0.86494 0.84684 1.90356 1.49551 1.15686 1.83170 1.20121 0.80020 0.87032 0.84699 1.90704 1.54092 1.14264 1.84023 1.48235 1.59449 1.10270 1.11733 1.23238 0.98118 0.77230 1.07541 1.21673 0.94474 1.01796 0.96975 1.18657 0.95041 0.90819 0.93117 1.21522 0.97227 0.93805 1.44779 0.93218 1.25679 0.98717 0.98339 0.95625 1.69964 1.27449 1.08203 1.49595 0.85738 0.80299 0.77464 0.78887 1.19993 1.20919 1.19808 1.21858 0.95778 0.97091 1.00410 1.21853 0.96092 0.97106 0.86021 1.25536 1.05207 1.00527 1.00519 1.21680 1.03228 1.04906 0.91885 1.23462 0.96627 0.87306 1.02712 1.76884 1.22498 1.23076 1.08215 1.84264 1.58680 1.04142 1.13695 0.91547 0.88609 0.91400 0.74809 0.83216 0.92299 0.90497 0.95837 0.97915 0.92952 0.91048 0.93684 0.90348 0.88790 0.79432 0.76390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.47 71.98 0.68 -1.44 16 2 C 0.22 3.53 3.07 44.25 0.14 3.66 16 3 H 0.12 1.95 7.58 -2.39 -0.02 1.93 16 4 N -0.69 -14.71 5.06 -447.44 -2.26 -16.97 16 5 C 0.52 14.67 7.77 87.27 0.68 15.35 16 6 O -0.51 -15.73 12.68 -3.24 -0.04 -15.78 16 7 C 0.50 16.44 7.76 87.27 0.68 17.11 16 8 O -0.55 -19.06 15.91 -3.26 -0.05 -19.11 16 9 N -0.57 -20.25 2.98 -821.31 -2.45 -22.69 16 10 C 0.06 2.28 6.20 86.22 0.53 2.82 16 11 C -0.11 -5.16 5.14 30.52 0.16 -5.00 16 12 C 0.04 2.06 2.07 -11.51 -0.02 2.04 16 13 C -0.54 -29.10 8.56 25.60 0.22 -28.88 16 14 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 15 C 0.02 0.84 5.30 84.65 0.45 1.28 16 16 N -0.91 -51.52 11.31 21.45 0.24 -51.27 16 17 Si 0.95 43.18 29.54 68.60 2.03 45.20 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 C -0.11 -4.58 5.30 30.67 0.16 -4.42 16 22 C 0.11 3.87 6.43 86.36 0.56 4.42 16 23 C -0.19 -2.74 5.51 24.97 0.14 -2.61 16 24 C -0.18 -2.02 10.17 21.45 0.22 -1.81 16 25 C 0.10 1.15 11.27 84.85 0.96 2.11 16 26 N -0.49 -8.90 12.09 -62.60 -0.76 -9.65 16 27 S 0.24 4.10 22.83 -56.49 -1.29 2.81 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.41 8.52 7.29 -92.70 -0.68 7.84 16 32 H 0.15 5.59 3.78 -82.38 -0.31 5.28 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.08 4.05 6.03 -2.39 -0.01 4.03 16 35 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 38 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.09 3.06 7.01 -2.39 -0.02 3.05 16 42 H 0.19 1.06 8.06 -2.91 -0.02 1.03 16 43 H 0.22 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -65.19 364.87 1.03 -64.16 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.07 Total: 18.66 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.54 Total: 4.65 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -5.22 Total: -100.59 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.09 Total: -34.89 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.29 Total: 2.81 kcal Total: -65.19 1.03 -64.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335012328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.473 kcal (2) G-P(sol) polarization free energy of solvation -65.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds