Wall clock time and date at job start Tue Mar 31 2020 20:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.87491 * 2 1 4 4 C 1.54325 * 110.00958 * 238.90713 * 2 1 3 5 5 C 1.55156 * 102.94344 * 262.70290 * 4 2 1 6 6 H 1.08995 * 111.00321 * 82.57128 * 5 4 2 7 7 N 1.46494 * 111.00316 * 206.38844 * 5 4 2 8 8 C 1.34779 * 119.99962 * 204.99580 * 7 5 4 9 9 O 1.21289 * 119.99732 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00324 * 179.97438 * 8 7 5 11 11 S 1.81000 * 109.47442 * 180.02562 * 10 8 7 12 12 C 1.76196 * 100.00196 * 180.02562 * 11 10 8 13 13 H 1.07993 * 119.99902 * 0.02562 * 12 11 10 14 14 C 1.38800 * 119.99775 * 179.97438 * 12 11 10 15 15 N 1.31625 * 120.00182 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46917 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47032 * 120.00294 * 16 14 12 19 19 H 1.48498 * 109.46930 * 240.00626 * 16 14 12 20 20 C 1.55136 * 101.48135 * 324.33118 * 5 4 2 21 21 N 1.47017 * 109.88635 * 121.01935 * 2 1 3 22 22 C 1.34770 * 125.64756 * 300.59960 * 21 2 1 23 23 O 1.21694 * 120.00651 * 5.55844 * 22 21 2 24 24 C 1.46681 * 120.00114 * 185.56544 * 22 21 2 25 25 C 1.37872 * 126.23689 * 186.93322 * 24 22 21 26 26 C 1.39835 * 107.08506 * 180.23260 * 25 24 22 27 27 C 1.35447 * 107.86498 * 359.76033 * 26 25 24 28 28 N 1.35531 * 108.87451 * 359.97438 * 27 26 25 29 29 H 0.97001 * 125.68104 * 179.97438 * 28 27 26 30 30 H 1.09001 * 109.47080 * 300.43644 * 1 2 3 31 31 H 1.09000 * 109.47601 * 60.43117 * 1 2 3 32 32 H 1.09001 * 109.47050 * 180.43224 * 1 2 3 33 33 H 1.09005 * 110.71955 * 21.06750 * 4 2 1 34 34 H 1.09002 * 110.71716 * 144.15840 * 4 2 1 35 35 H 0.97001 * 120.00650 * 24.99471 * 7 5 4 36 36 H 1.08997 * 109.47331 * 300.00693 * 10 8 7 37 37 H 1.09005 * 109.46655 * 60.00351 * 10 8 7 38 38 H 0.97000 * 119.99927 * 179.97438 * 15 14 12 39 39 H 1.09000 * 110.50019 * 278.45374 * 20 5 4 40 40 H 1.08999 * 110.34050 * 156.05720 * 20 5 4 41 41 H 1.08000 * 126.45852 * 359.97438 * 25 24 22 42 42 H 1.08005 * 126.06541 * 179.73751 * 26 25 24 43 43 H 1.08001 * 125.56365 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0580 -0.7489 -1.2418 5 6 2.3574 -2.1680 -0.6905 6 1 1.4520 -2.7740 -0.6595 7 7 3.4011 -2.8280 -1.4787 8 6 3.4659 -4.1737 -1.5185 9 8 2.6599 -4.8381 -0.9021 10 6 4.5391 -4.8527 -2.3297 11 16 4.3615 -6.6480 -2.1829 12 6 5.7028 -7.1723 -3.1979 13 1 6.3329 -6.4401 -3.6807 14 6 5.9503 -8.5264 -3.3761 15 7 5.1826 -9.4188 -2.7873 16 14 7.3728 -9.0822 -4.4518 17 1 8.0774 -7.8929 -4.9941 18 1 8.3190 -9.8911 -3.6420 19 1 6.8531 -9.9045 -5.5737 20 6 2.8644 -1.8433 0.7392 21 7 2.0301 -0.7124 1.1848 22 6 1.7730 -0.3829 2.4661 23 8 0.9917 0.5154 2.7185 24 6 2.4350 -1.1069 3.5565 25 6 2.1711 -0.9714 4.9030 26 6 3.0316 -1.8413 5.5798 27 6 3.7856 -2.4828 4.6554 28 7 3.4302 -2.0484 3.4217 29 1 3.8162 -2.3475 2.5836 30 1 -0.3633 0.5206 0.8861 31 1 -0.3634 0.5071 -0.8938 32 1 -0.3633 -1.0276 0.0078 33 1 1.2960 -0.7903 -2.0201 34 1 2.9666 -0.2787 -1.6182 35 1 4.0455 -2.2967 -1.9720 36 1 4.4420 -4.5627 -3.3759 37 1 5.5193 -4.5527 -1.9589 38 1 5.3553 -10.3651 -2.9121 39 1 3.9148 -1.5533 0.7151 40 1 2.7219 -2.7016 1.3958 41 1 1.4406 -0.3139 5.3508 42 1 3.0857 -1.9773 6.6499 43 1 4.5459 -3.2201 4.8667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338033409.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:43 Heat of formation + Delta-G solvation = -14.623528 kcal Electronic energy + Delta-G solvation = -26291.508236 eV Core-core repulsion = 22464.028676 eV Total energy + Delta-G solvation = -3827.479560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67079 -40.30471 -39.15591 -37.61677 -34.37317 -32.72047 -32.51484 -31.08578 -30.77981 -29.26430 -28.53036 -26.37848 -25.57873 -24.08406 -22.16274 -21.42249 -20.61490 -20.33425 -20.15928 -18.17056 -17.99554 -16.89106 -16.79769 -16.07786 -15.58270 -15.41283 -15.14345 -14.88330 -14.72020 -14.15216 -14.01803 -13.97289 -13.78638 -13.59714 -13.36964 -13.31292 -12.89225 -12.67841 -12.58690 -12.53833 -12.39171 -12.11224 -11.71633 -11.56560 -11.13885 -11.11887 -11.08168 -10.82871 -10.27893 -9.90147 -9.64072 -9.33300 -9.21711 -9.15257 -9.04445 -8.44219 -8.34862 -6.60799 -6.30400 -4.02009 1.25009 2.39236 2.54028 2.80912 2.87410 2.96207 3.15523 3.16683 3.21603 3.25605 3.52579 3.99244 4.09109 4.11836 4.43471 4.55249 4.69829 4.73637 4.88747 4.97036 4.98404 5.05279 5.08032 5.14145 5.22187 5.23952 5.32748 5.42787 5.49144 5.68248 5.71702 5.74646 5.83750 5.86846 5.99473 5.99827 6.12228 6.33657 6.49907 6.70864 7.06833 7.15835 7.43624 7.51683 7.85103 8.26677 8.36080 9.15348 10.77002 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.002490 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.414401 B =11240.807254 C =12579.179796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.141 3.859 3 H 0.081 0.919 4 C -0.136 4.136 5 C 0.142 3.858 6 H 0.111 0.889 7 N -0.730 5.730 8 C 0.533 3.467 9 O -0.512 6.512 10 C -0.154 4.154 11 S -0.059 6.059 12 C -0.536 4.536 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.072 3.928 21 N -0.616 5.616 22 C 0.609 3.391 23 O -0.527 6.527 24 C -0.059 4.059 25 C -0.105 4.105 26 C -0.214 4.214 27 C 0.025 3.975 28 N -0.542 5.542 29 H 0.419 0.581 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.402 0.598 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.269 0.731 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 19.789 8.096 21.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.038 3.962 3 H 0.099 0.901 4 C -0.175 4.175 5 C 0.035 3.965 6 H 0.129 0.871 7 N -0.384 5.384 8 C 0.319 3.681 9 O -0.385 6.385 10 C -0.305 4.305 11 S 0.167 5.833 12 C -0.685 4.685 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.053 4.053 21 N -0.351 5.351 22 C 0.400 3.600 23 O -0.403 6.403 24 C -0.172 4.172 25 C -0.132 4.132 26 C -0.238 4.238 27 C -0.111 4.111 28 N -0.142 5.142 29 H 0.261 0.739 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.237 0.763 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.773 18.954 9.177 21.593 hybrid contribution 2.512 0.318 -1.985 3.217 sum -2.261 19.273 7.192 20.695 Atomic orbital electron populations 1.22204 0.94041 1.02874 1.03362 1.21532 0.95367 0.96148 0.83190 0.90094 1.23059 1.02919 0.94206 0.97292 1.21940 0.92618 0.93506 0.88464 0.87073 1.45940 1.33610 1.06870 1.52011 1.20456 0.85452 0.81264 0.80890 1.90730 1.40633 1.63826 1.43319 1.23540 0.99279 1.05750 1.01924 1.85429 1.42525 0.89903 1.65413 1.22886 1.16339 0.94669 1.34572 0.90837 1.24999 0.97090 0.95542 0.95939 1.70017 1.37331 1.01619 1.41212 0.86110 0.80954 0.78703 0.79693 1.19609 1.20531 1.20510 1.23043 0.95209 0.89272 0.97774 1.48360 1.50984 1.30599 1.05147 1.16705 0.80919 0.82487 0.79889 1.90817 1.35469 1.31210 1.82802 1.20313 1.00085 1.01495 0.95297 1.21307 1.00792 1.00709 0.90418 1.20916 1.01073 1.02382 0.99448 1.22175 1.02828 1.02506 0.83606 1.42744 1.30127 1.32063 1.09282 0.73915 0.90538 0.91479 0.92198 0.88642 0.89683 0.76311 0.88994 0.89088 0.92151 0.90654 0.89871 0.83537 0.83846 0.81023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.06 37.16 0.34 -1.17 16 2 C 0.14 1.21 3.52 -66.96 -0.24 0.97 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.14 -0.93 6.14 -24.90 -0.15 -1.08 16 5 C 0.14 1.36 3.44 -65.66 -0.23 1.13 16 6 H 0.11 1.33 7.54 -51.93 -0.39 0.94 16 7 N -0.73 -7.62 5.20 -51.62 -0.27 -7.88 16 8 C 0.53 8.54 7.85 -10.99 -0.09 8.45 16 9 O -0.51 -10.34 15.50 5.55 0.09 -10.25 16 10 C -0.15 -2.78 6.16 36.00 0.22 -2.56 16 11 S -0.06 -1.51 20.57 -107.50 -2.21 -3.73 16 12 C -0.54 -14.62 9.50 30.94 0.29 -14.32 16 13 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 15 N -0.87 -25.35 13.22 55.49 0.73 -24.61 16 16 Si 0.92 20.70 29.55 -169.99 -5.02 15.67 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 20 C 0.07 0.67 4.95 -2.41 -0.01 0.66 16 21 N -0.62 -6.34 3.08 -164.41 -0.51 -6.84 16 22 C 0.61 7.73 7.63 -12.86 -0.10 7.63 16 23 O -0.53 -7.98 15.60 5.19 0.08 -7.89 16 24 C -0.06 -0.70 6.82 -81.98 -0.56 -1.26 16 25 C -0.11 -1.19 10.66 -39.12 -0.42 -1.61 16 26 C -0.21 -2.04 10.81 -39.98 -0.43 -2.48 16 27 C 0.03 0.23 11.89 -16.91 -0.20 0.03 16 28 N -0.54 -5.33 5.36 -9.39 -0.05 -5.38 16 29 H 0.42 3.58 5.35 -40.82 -0.22 3.36 16 30 H 0.08 0.85 6.58 -51.93 -0.34 0.51 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.59 7.83 -51.93 -0.41 0.18 16 34 H 0.08 0.44 8.01 -51.93 -0.42 0.02 16 35 H 0.40 2.99 8.57 -40.82 -0.35 2.64 16 36 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 37 H 0.09 1.48 8.14 -51.91 -0.42 1.06 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 40 H 0.08 0.88 6.18 -51.93 -0.32 0.55 16 41 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 42 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 43 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -35.30 372.24 -8.99 -44.29 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.78 Total: 4.68 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.66 Total: -3.66 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.09 Total: -44.72 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.17 Total: -18.15 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.30 -8.99 -44.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338033409.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.670 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds