Wall clock time and date at job start Tue Mar 31 2020 20:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.32938 * 2 1 4 4 C 1.54908 * 110.37266 * 237.76124 * 2 1 3 5 5 C 1.55150 * 101.58490 * 204.15607 * 4 2 1 6 6 H 1.09002 * 110.71837 * 276.95615 * 5 4 2 7 7 N 1.46501 * 110.72081 * 153.86466 * 5 4 2 8 8 C 1.34774 * 119.99943 * 154.99822 * 7 5 4 9 9 O 1.21289 * 120.00161 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00067 * 179.97438 * 8 7 5 11 11 S 1.80999 * 109.47226 * 179.97438 * 10 8 7 12 12 C 1.76203 * 100.00058 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00022 * 359.97438 * 12 11 10 14 14 C 1.38795 * 120.00122 * 180.02562 * 12 11 10 15 15 N 1.31629 * 120.00276 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00205 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46865 * 59.99594 * 16 14 12 18 18 H 1.48497 * 109.47704 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47184 * 300.00221 * 16 14 12 20 20 C 1.54324 * 102.94580 * 35.49594 * 5 4 2 21 21 N 1.47020 * 107.26966 * 337.81096 * 20 5 4 22 22 C 1.34777 * 125.64876 * 178.98316 * 21 20 5 23 23 O 1.21696 * 120.00264 * 179.97438 * 22 21 20 24 24 C 1.46682 * 119.99930 * 359.94589 * 22 21 20 25 25 C 1.37862 * 126.23375 * 179.97438 * 24 22 21 26 26 C 1.39843 * 107.08769 * 180.02562 * 25 24 22 27 27 C 1.35457 * 107.86195 * 0.02562 * 26 25 24 28 28 N 1.35538 * 108.87107 * 359.73038 * 27 26 25 29 29 H 0.96997 * 125.68021 * 180.30715 * 28 27 26 30 30 H 1.09002 * 109.47153 * 182.23844 * 1 2 3 31 31 H 1.09001 * 109.46832 * 62.24034 * 1 2 3 32 32 H 1.09004 * 109.47261 * 302.24016 * 1 2 3 33 33 H 1.09006 * 110.99972 * 322.22487 * 4 2 1 34 34 H 1.08999 * 111.00546 * 86.07017 * 4 2 1 35 35 H 0.96998 * 120.00077 * 334.99673 * 7 5 4 36 36 H 1.08995 * 109.47152 * 299.99757 * 10 8 7 37 37 H 1.08999 * 109.47087 * 59.99682 * 10 8 7 38 38 H 0.96998 * 120.00596 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.87905 * 97.22990 * 20 5 4 40 40 H 1.08996 * 109.88065 * 218.23781 * 20 5 4 41 41 H 1.08004 * 126.46023 * 0.04540 * 25 24 22 42 42 H 1.07992 * 126.06920 * 180.02562 * 26 25 24 43 43 H 1.07993 * 125.56267 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0692 -0.7747 -1.2283 5 6 3.4778 -1.1990 -0.7352 6 1 4.1952 -0.3904 -0.8753 7 7 3.9250 -2.4115 -1.4253 8 6 5.2420 -2.6706 -1.5470 9 8 6.0569 -1.8999 -1.0856 10 6 5.7021 -3.9181 -2.2563 11 16 7.5110 -3.9805 -2.2552 12 6 7.7655 -5.4931 -3.1223 13 1 6.9182 -6.0657 -3.4695 14 6 9.0549 -5.9493 -3.3583 15 7 10.0877 -5.2517 -2.9348 16 14 9.3248 -7.5532 -4.2770 17 1 8.7255 -7.4543 -5.6322 18 1 10.7814 -7.8152 -4.3984 19 1 8.6818 -8.6649 -3.5315 20 6 3.2494 -1.4775 0.7654 21 7 2.0431 -0.7395 1.1676 22 6 1.4973 -0.7384 2.3999 23 8 0.4931 -0.0872 2.6201 24 6 2.1132 -1.5228 3.4755 25 6 1.6661 -1.6138 4.7764 26 6 2.5467 -2.4620 5.4552 27 6 3.4957 -2.8648 4.5766 28 7 3.2405 -2.3056 3.3687 29 1 3.7656 -2.4343 2.5634 30 1 -0.3633 -1.0269 0.0401 31 1 -0.3633 0.4787 -0.9094 32 1 -0.3634 0.5482 0.8692 33 1 1.4512 -1.6467 -1.4424 34 1 2.1399 -0.1243 -2.1002 35 1 3.2733 -3.0278 -1.7945 36 1 5.3076 -4.7947 -1.7424 37 1 5.3399 -3.9061 -3.2843 38 1 10.9889 -5.5706 -3.0994 39 1 3.1014 -2.5455 0.9259 40 1 4.1076 -1.1317 1.3414 41 1 0.7988 -1.1229 5.1929 42 1 2.4817 -2.7454 6.4952 43 1 4.3189 -3.5269 4.8010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338033425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:45 Heat of formation + Delta-G solvation = -13.664860 kcal Electronic energy + Delta-G solvation = -26285.001689 eV Core-core repulsion = 22457.563700 eV Total energy + Delta-G solvation = -3827.437989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.68113 -40.31063 -39.18852 -37.57995 -34.37852 -32.74787 -32.51597 -31.08537 -30.90189 -29.25716 -28.57878 -26.34076 -25.57754 -23.96275 -22.06623 -21.57622 -20.66733 -20.33066 -20.15074 -17.99427 -17.85534 -17.23923 -16.60378 -16.40191 -15.72174 -15.42455 -15.13913 -14.88204 -14.58059 -14.19988 -14.04969 -13.98067 -13.76441 -13.65123 -13.38783 -12.95304 -12.85846 -12.74224 -12.60840 -12.52337 -12.39073 -12.20490 -11.81058 -11.54887 -11.25370 -11.13493 -11.10610 -10.84307 -10.10399 -9.92376 -9.65086 -9.28889 -9.25346 -9.13732 -9.06576 -8.45436 -8.36520 -6.61247 -6.30312 -4.02238 1.24028 2.40760 2.52729 2.79879 2.85977 2.96324 3.15695 3.17335 3.21308 3.23809 3.52038 3.96177 4.07561 4.12014 4.42989 4.56993 4.64871 4.78971 4.88755 4.94001 4.99467 5.05142 5.06742 5.12940 5.21585 5.24901 5.34702 5.41096 5.45918 5.64403 5.72948 5.78121 5.78865 5.85759 5.97724 5.99471 6.16547 6.32167 6.49170 6.70159 7.06887 7.15541 7.42437 7.50923 7.85635 8.26132 8.34504 9.15146 10.76994 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.002487 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.251128 B =11257.389299 C =12568.824683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.138 3.862 3 H 0.083 0.917 4 C -0.137 4.137 5 C 0.141 3.859 6 H 0.112 0.888 7 N -0.731 5.731 8 C 0.533 3.467 9 O -0.513 6.513 10 C -0.155 4.155 11 S -0.058 6.058 12 C -0.538 4.538 13 H 0.073 0.927 14 C 0.075 3.925 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.274 1.274 20 C 0.074 3.926 21 N -0.616 5.616 22 C 0.609 3.391 23 O -0.526 6.526 24 C -0.060 4.060 25 C -0.106 4.106 26 C -0.215 4.215 27 C 0.025 3.975 28 N -0.543 5.543 29 H 0.419 0.581 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.402 0.598 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.270 0.730 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.524 6.800 8.834 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.101 0.899 4 C -0.175 4.175 5 C 0.034 3.966 6 H 0.130 0.870 7 N -0.385 5.385 8 C 0.320 3.680 9 O -0.386 6.386 10 C -0.306 4.306 11 S 0.168 5.832 12 C -0.686 4.686 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.051 4.051 21 N -0.351 5.351 22 C 0.400 3.600 23 O -0.403 6.403 24 C -0.173 4.173 25 C -0.133 4.133 26 C -0.239 4.239 27 C -0.111 4.111 28 N -0.143 5.143 29 H 0.262 0.738 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.237 0.763 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.165 0.835 42 H 0.161 0.839 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.441 8.462 9.617 21.640 hybrid contribution -0.584 -2.487 -1.620 3.025 sum -18.024 5.974 7.998 20.604 Atomic orbital electron populations 1.22140 0.93205 1.03025 1.03579 1.21903 0.95745 0.95628 0.83175 0.89913 1.23220 0.94894 1.01478 0.97938 1.21780 0.96574 0.89295 0.88906 0.86980 1.46017 1.07788 1.24771 1.59945 1.20454 0.81414 0.87293 0.78871 1.90723 1.52615 1.48306 1.46952 1.23545 1.07478 0.96931 1.02602 1.85400 0.91430 1.31292 1.75051 1.22811 0.95153 1.08214 1.42441 0.90933 1.24990 0.94926 0.98015 0.95565 1.69994 0.98714 1.37957 1.43566 0.86220 0.77411 0.81971 0.79892 1.19899 1.20757 1.19908 1.22719 0.87731 0.96744 0.97875 1.48407 1.28102 1.49062 1.09577 1.16697 0.83081 0.80495 0.79721 1.90788 1.24603 1.43615 1.81305 1.20349 0.94468 1.05694 0.96779 1.21303 1.00545 1.00340 0.91075 1.20920 0.97947 1.04798 1.00220 1.22189 1.02160 1.02043 0.84757 1.42793 1.22723 1.36803 1.11979 0.73829 0.92532 0.91741 0.89484 0.89654 0.88572 0.76297 0.89110 0.88986 0.92033 0.90874 0.90447 0.83545 0.83868 0.81026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.59 37.16 0.32 -1.07 16 2 C 0.14 1.18 3.77 -66.42 -0.25 0.93 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.14 -0.95 6.13 -24.59 -0.15 -1.10 16 5 C 0.14 1.32 3.32 -66.10 -0.22 1.10 16 6 H 0.11 1.23 7.55 -51.93 -0.39 0.84 16 7 N -0.73 -7.69 5.10 -52.03 -0.27 -7.96 16 8 C 0.53 8.48 7.85 -10.99 -0.09 8.40 16 9 O -0.51 -10.15 15.51 5.55 0.09 -10.07 16 10 C -0.16 -2.80 6.16 36.00 0.22 -2.57 16 11 S -0.06 -1.48 20.57 -107.50 -2.21 -3.70 16 12 C -0.54 -14.67 9.50 30.94 0.29 -14.38 16 13 H 0.07 1.86 7.80 -52.49 -0.41 1.46 16 14 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 15 N -0.87 -25.34 13.22 55.49 0.73 -24.61 16 16 Si 0.92 20.70 29.55 -169.99 -5.02 15.68 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 C 0.07 0.70 4.86 -3.07 -0.01 0.69 16 21 N -0.62 -6.26 3.24 -164.57 -0.53 -6.80 16 22 C 0.61 7.56 7.60 -12.85 -0.10 7.46 16 23 O -0.53 -7.69 14.60 5.19 0.08 -7.61 16 24 C -0.06 -0.70 6.89 -81.98 -0.56 -1.26 16 25 C -0.11 -1.17 10.65 -39.12 -0.42 -1.59 16 26 C -0.21 -2.02 10.81 -39.97 -0.43 -2.45 16 27 C 0.03 0.22 11.89 -16.91 -0.20 0.02 16 28 N -0.54 -5.35 5.62 -9.39 -0.05 -5.41 16 29 H 0.42 3.74 4.92 -40.82 -0.20 3.54 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.95 6.09 -51.93 -0.32 0.63 16 33 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.40 3.17 8.56 -40.82 -0.35 2.82 16 36 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 37 H 0.09 1.54 8.14 -51.92 -0.42 1.11 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.07 0.66 6.96 -51.93 -0.36 0.29 16 40 H 0.08 0.78 7.25 -51.93 -0.38 0.40 16 41 H 0.15 1.52 8.06 -52.48 -0.42 1.09 16 42 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -34.68 370.63 -9.06 -43.74 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.76 Total: 5.01 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.69 Total: -3.87 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.12 Total: -44.76 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.16 Total: -17.68 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.68 -9.06 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338033425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.075 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds