Wall clock time and date at job start Tue Mar 31 2020 20:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.87304 * 2 1 4 4 C 1.54323 * 109.87755 * 121.01051 * 2 1 3 5 5 C 1.55158 * 103.10213 * 97.29491 * 4 2 1 6 6 H 1.09007 * 110.99919 * 277.51292 * 5 4 2 7 7 N 1.46495 * 111.00752 * 153.66439 * 5 4 2 8 8 C 1.34780 * 120.00482 * 154.99524 * 7 5 4 9 9 O 1.21277 * 119.99519 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00148 * 179.97438 * 8 7 5 11 11 S 1.80999 * 109.46930 * 180.02562 * 10 8 7 12 12 C 1.76207 * 99.99944 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99827 * 359.97438 * 12 11 10 14 14 C 1.38799 * 119.99670 * 180.02562 * 12 11 10 15 15 N 1.31626 * 120.00226 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99750 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46729 * 59.99779 * 16 14 12 18 18 H 1.48498 * 109.47155 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47194 * 300.00194 * 16 14 12 20 20 C 1.55383 * 101.36780 * 35.48644 * 5 4 2 21 21 N 1.47022 * 110.01330 * 238.89391 * 2 1 3 22 22 C 1.34780 * 125.64624 * 59.48447 * 21 2 1 23 23 O 1.21700 * 119.99631 * 354.49184 * 22 21 2 24 24 C 1.46673 * 119.99793 * 174.48588 * 22 21 2 25 25 C 1.37877 * 126.22964 * 173.27303 * 24 22 21 26 26 C 1.39837 * 107.08399 * 179.97438 * 25 24 22 27 27 C 1.35454 * 107.86229 * 0.02562 * 26 25 24 28 28 N 1.35533 * 108.87608 * 359.72958 * 27 26 25 29 29 H 0.96999 * 125.68231 * 180.29800 * 28 27 26 30 30 H 1.08996 * 109.47491 * 298.98934 * 1 2 3 31 31 H 1.09004 * 109.46909 * 58.98654 * 1 2 3 32 32 H 1.08999 * 109.47544 * 178.99016 * 1 2 3 33 33 H 1.09004 * 110.72080 * 215.73831 * 4 2 1 34 34 H 1.08999 * 110.72563 * 338.83925 * 4 2 1 35 35 H 0.97006 * 119.99695 * 334.99555 * 7 5 4 36 36 H 1.09005 * 109.47079 * 299.99699 * 10 8 7 37 37 H 1.08995 * 109.47634 * 59.99912 * 10 8 7 38 38 H 0.97008 * 119.99809 * 180.02562 * 15 14 12 39 39 H 1.08994 * 110.34448 * 204.16421 * 20 5 4 40 40 H 1.09006 * 110.34465 * 81.87569 * 20 5 4 41 41 H 1.07994 * 126.45783 * 359.96727 * 25 24 22 42 42 H 1.07997 * 126.06579 * 180.02562 * 26 25 24 43 43 H 1.08000 * 125.56190 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7477 1.2439 5 6 2.3547 -2.1692 0.6992 6 1 1.4487 -2.7744 0.6667 7 7 3.3949 -2.8273 1.4936 8 6 3.4583 -4.1728 1.5389 9 8 2.6539 -4.8388 0.9224 10 6 4.5287 -4.8496 2.3556 11 16 4.3505 -6.6453 2.2142 12 6 5.6886 -7.1669 3.2352 13 1 6.3177 -6.4333 3.7174 14 6 5.9348 -8.5205 3.4186 15 7 5.1690 -9.4145 2.8297 16 14 7.3538 -9.0735 4.5004 17 1 7.1575 -8.5545 5.8779 18 1 7.4021 -10.5573 4.5332 19 1 8.6293 -8.5482 3.9506 20 6 2.8617 -1.8474 -0.7339 21 7 2.0332 -0.7137 -1.1828 22 6 1.7794 -0.3854 -2.4652 23 8 0.9995 0.5133 -2.7202 24 6 2.4434 -1.1113 -3.5531 25 6 2.1855 -0.9742 -4.9006 26 6 3.0423 -1.8503 -5.5741 27 6 3.7916 -2.4934 -4.6468 28 7 3.4413 -2.0493 -3.4152 29 1 3.8281 -2.3446 -2.5761 30 1 -0.3634 0.4980 0.8989 31 1 -0.3633 0.5295 -0.8808 32 1 -0.3634 -1.0275 -0.0181 33 1 2.9641 -0.2792 1.6203 34 1 1.2918 -0.7857 2.0214 35 1 4.0382 -2.2945 1.9870 36 1 5.5102 -4.5521 1.9863 37 1 4.4292 -4.5554 3.4004 38 1 5.3408 -10.3605 2.9582 39 1 2.7165 -2.7063 -1.3890 40 1 3.9134 -1.5620 -0.7087 41 1 1.4586 -0.3145 -5.3510 42 1 3.0969 -1.9895 -6.6436 43 1 4.5477 -3.2359 -4.8552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338033426.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:47 Heat of formation + Delta-G solvation = -14.946447 kcal Electronic energy + Delta-G solvation = -26284.211221 eV Core-core repulsion = 22456.717658 eV Total energy + Delta-G solvation = -3827.493563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66714 -40.29553 -39.15614 -37.61315 -34.37272 -32.71935 -32.51201 -31.08732 -30.77567 -29.26635 -28.52967 -26.37257 -25.57372 -24.08728 -22.16138 -21.42130 -20.61306 -20.33576 -20.15847 -18.16836 -17.99287 -16.89399 -16.79544 -16.07693 -15.58123 -15.41520 -15.14247 -14.87979 -14.71959 -14.14734 -14.01428 -13.97279 -13.78718 -13.60039 -13.36999 -13.30984 -12.89434 -12.67474 -12.58526 -12.54128 -12.39423 -12.11254 -11.71287 -11.56124 -11.14176 -11.10545 -11.08000 -10.83946 -10.28331 -9.91940 -9.64146 -9.33389 -9.21569 -9.13664 -9.04338 -8.44270 -8.35671 -6.60701 -6.29868 -4.01772 1.24850 2.39146 2.53962 2.80973 2.87218 2.96045 3.16650 3.17421 3.21312 3.23923 3.52401 3.99450 4.08668 4.12323 4.43519 4.55426 4.69884 4.73674 4.88698 4.97062 4.98545 5.05542 5.08182 5.14033 5.22065 5.23880 5.32742 5.42808 5.49230 5.68311 5.71668 5.74619 5.83700 5.86783 5.99450 5.99814 6.11886 6.33722 6.49798 6.70746 7.06823 7.15789 7.43608 7.51199 7.85001 8.26461 8.36087 9.15504 10.77410 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.002486 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.500908 B =11258.450077 C =12595.867084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.141 3.859 3 H 0.081 0.919 4 C -0.137 4.137 5 C 0.142 3.858 6 H 0.111 0.889 7 N -0.729 5.729 8 C 0.533 3.467 9 O -0.512 6.512 10 C -0.155 4.155 11 S -0.058 6.058 12 C -0.538 4.538 13 H 0.073 0.927 14 C 0.075 3.925 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.274 1.274 20 C 0.072 3.928 21 N -0.616 5.616 22 C 0.609 3.391 23 O -0.527 6.527 24 C -0.059 4.059 25 C -0.105 4.105 26 C -0.214 4.214 27 C 0.025 3.975 28 N -0.542 5.542 29 H 0.418 0.582 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.402 0.598 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.270 0.730 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 19.743 -8.192 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.038 3.962 3 H 0.099 0.901 4 C -0.175 4.175 5 C 0.035 3.965 6 H 0.129 0.871 7 N -0.384 5.384 8 C 0.320 3.680 9 O -0.385 6.385 10 C -0.305 4.305 11 S 0.168 5.832 12 C -0.686 4.686 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.053 4.053 21 N -0.351 5.351 22 C 0.400 3.600 23 O -0.403 6.403 24 C -0.172 4.172 25 C -0.132 4.132 26 C -0.238 4.238 27 C -0.111 4.111 28 N -0.142 5.142 29 H 0.261 0.739 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.237 0.763 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.740 18.902 -9.277 21.583 hybrid contribution 2.514 0.339 1.998 3.229 sum -2.227 19.241 -7.279 20.692 Atomic orbital electron populations 1.22204 0.94049 1.02893 1.03320 1.21526 0.95345 0.96142 0.83210 0.90077 1.23060 1.02922 0.94213 0.97300 1.21967 0.92649 0.93524 0.88400 0.87098 1.45932 1.33870 1.06877 1.51715 1.20452 0.85398 0.81258 0.80942 1.90727 1.40619 1.63715 1.43430 1.23541 0.99311 1.05785 1.01872 1.85424 1.42743 0.89893 1.65135 1.22810 1.16624 0.94656 1.34527 0.90932 1.24993 0.97061 0.95514 0.95942 1.69999 1.37415 1.01667 1.41123 0.86221 0.81319 0.77647 0.80305 1.19901 1.20761 1.19917 1.23070 0.95274 0.89218 0.97753 1.48351 1.51164 1.30418 1.05132 1.16706 0.80921 0.82493 0.79876 1.90819 1.35550 1.31197 1.82726 1.20307 0.99963 1.01631 0.95285 1.21308 1.00828 1.00676 0.90414 1.20917 1.01282 1.02181 0.99438 1.22177 1.02935 1.02354 0.83645 1.42729 1.30019 1.32118 1.09329 0.73928 0.91466 0.90578 0.92195 0.89715 0.88645 0.76310 0.89086 0.88992 0.92035 0.89875 0.90694 0.83536 0.83845 0.81021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.04 37.16 0.34 -1.16 16 2 C 0.14 1.21 3.52 -66.95 -0.24 0.98 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.14 -0.93 6.13 -24.90 -0.15 -1.09 16 5 C 0.14 1.36 3.45 -65.53 -0.23 1.14 16 6 H 0.11 1.33 7.54 -51.92 -0.39 0.94 16 7 N -0.73 -7.62 5.21 -51.48 -0.27 -7.89 16 8 C 0.53 8.55 7.85 -10.99 -0.09 8.46 16 9 O -0.51 -10.34 15.50 5.56 0.09 -10.25 16 10 C -0.15 -2.78 6.16 36.00 0.22 -2.56 16 11 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 12 C -0.54 -14.67 9.50 30.94 0.29 -14.37 16 13 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 14 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 15 N -0.87 -25.38 13.22 55.49 0.73 -24.65 16 16 Si 0.92 20.69 29.55 -169.99 -5.02 15.67 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 C 0.07 0.67 4.96 -2.28 -0.01 0.66 16 21 N -0.62 -6.33 3.08 -164.25 -0.51 -6.84 16 22 C 0.61 7.73 7.63 -12.85 -0.10 7.63 16 23 O -0.53 -7.97 15.63 5.19 0.08 -7.89 16 24 C -0.06 -0.70 6.82 -81.98 -0.56 -1.26 16 25 C -0.11 -1.19 10.66 -39.12 -0.42 -1.61 16 26 C -0.21 -2.04 10.81 -39.98 -0.43 -2.47 16 27 C 0.03 0.23 11.89 -16.91 -0.20 0.03 16 28 N -0.54 -5.31 5.36 -9.39 -0.05 -5.36 16 29 H 0.42 3.57 5.37 -40.82 -0.22 3.35 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.85 6.62 -51.93 -0.34 0.50 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.44 8.00 -51.93 -0.42 0.02 16 34 H 0.10 0.59 7.83 -51.93 -0.41 0.18 16 35 H 0.40 2.99 8.57 -40.82 -0.35 2.64 16 36 H 0.09 1.48 8.14 -51.91 -0.42 1.06 16 37 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.08 0.88 6.22 -51.93 -0.32 0.55 16 40 H 0.07 0.58 7.84 -51.93 -0.41 0.17 16 41 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -35.27 372.34 -8.99 -44.27 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.78 Total: 4.73 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.66 Total: -3.68 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.09 Total: -44.74 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.17 Total: -18.15 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.27 -8.99 -44.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338033426.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.323 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds