Wall clock time and date at job start Tue Mar 31 2020 20:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.87304 * 2 1 4 4 C 1.54323 * 109.87755 * 121.01051 * 2 1 3 5 5 C 1.55158 * 103.10213 * 97.29491 * 4 2 1 6 6 H 1.09007 * 110.99919 * 277.51292 * 5 4 2 7 7 N 1.46495 * 111.00752 * 153.66439 * 5 4 2 8 8 C 1.34780 * 120.00482 * 154.99524 * 7 5 4 9 9 O 1.21277 * 119.99519 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00148 * 179.97438 * 8 7 5 11 11 S 1.80999 * 109.46930 * 180.02562 * 10 8 7 12 12 C 1.76207 * 99.99944 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99827 * 359.97438 * 12 11 10 14 14 C 1.38799 * 119.99670 * 180.02562 * 12 11 10 15 15 N 1.31626 * 120.00226 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99750 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46729 * 59.99779 * 16 14 12 18 18 H 1.48498 * 109.47155 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47194 * 300.00194 * 16 14 12 20 20 C 1.55383 * 101.36780 * 35.48644 * 5 4 2 21 21 N 1.47022 * 110.01330 * 238.89391 * 2 1 3 22 22 C 1.34780 * 125.64624 * 59.48447 * 21 2 1 23 23 O 1.21700 * 119.99631 * 354.49184 * 22 21 2 24 24 C 1.46673 * 119.99793 * 174.48588 * 22 21 2 25 25 C 1.37877 * 126.22964 * 173.27303 * 24 22 21 26 26 C 1.39837 * 107.08399 * 179.97438 * 25 24 22 27 27 C 1.35454 * 107.86229 * 0.02562 * 26 25 24 28 28 N 1.35533 * 108.87608 * 359.72958 * 27 26 25 29 29 H 0.96999 * 125.68231 * 180.29800 * 28 27 26 30 30 H 1.08996 * 109.47491 * 298.98934 * 1 2 3 31 31 H 1.09004 * 109.46909 * 58.98654 * 1 2 3 32 32 H 1.08999 * 109.47544 * 178.99016 * 1 2 3 33 33 H 1.09004 * 110.72080 * 215.73831 * 4 2 1 34 34 H 1.08999 * 110.72563 * 338.83925 * 4 2 1 35 35 H 0.97006 * 119.99695 * 334.99555 * 7 5 4 36 36 H 1.09005 * 109.47079 * 299.99699 * 10 8 7 37 37 H 1.08995 * 109.47634 * 59.99912 * 10 8 7 38 38 H 0.97008 * 119.99809 * 180.02562 * 15 14 12 39 39 H 1.08994 * 110.34448 * 204.16421 * 20 5 4 40 40 H 1.09006 * 110.34465 * 81.87569 * 20 5 4 41 41 H 1.07994 * 126.45783 * 359.96727 * 25 24 22 42 42 H 1.07997 * 126.06579 * 180.02562 * 26 25 24 43 43 H 1.08000 * 125.56190 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7477 1.2439 5 6 2.3547 -2.1692 0.6992 6 1 1.4487 -2.7744 0.6667 7 7 3.3949 -2.8273 1.4936 8 6 3.4583 -4.1728 1.5389 9 8 2.6539 -4.8388 0.9224 10 6 4.5287 -4.8496 2.3556 11 16 4.3505 -6.6453 2.2142 12 6 5.6886 -7.1669 3.2352 13 1 6.3177 -6.4333 3.7174 14 6 5.9348 -8.5205 3.4186 15 7 5.1690 -9.4145 2.8297 16 14 7.3538 -9.0735 4.5004 17 1 7.1575 -8.5545 5.8779 18 1 7.4021 -10.5573 4.5332 19 1 8.6293 -8.5482 3.9506 20 6 2.8617 -1.8474 -0.7339 21 7 2.0332 -0.7137 -1.1828 22 6 1.7794 -0.3854 -2.4652 23 8 0.9995 0.5133 -2.7202 24 6 2.4434 -1.1113 -3.5531 25 6 2.1855 -0.9742 -4.9006 26 6 3.0423 -1.8503 -5.5741 27 6 3.7916 -2.4934 -4.6468 28 7 3.4413 -2.0493 -3.4152 29 1 3.8281 -2.3446 -2.5761 30 1 -0.3634 0.4980 0.8989 31 1 -0.3633 0.5295 -0.8808 32 1 -0.3634 -1.0275 -0.0181 33 1 2.9641 -0.2792 1.6203 34 1 1.2918 -0.7857 2.0214 35 1 4.0382 -2.2945 1.9870 36 1 5.5102 -4.5521 1.9863 37 1 4.4292 -4.5554 3.4004 38 1 5.3408 -10.3605 2.9582 39 1 2.7165 -2.7063 -1.3890 40 1 3.9134 -1.5620 -0.7087 41 1 1.4586 -0.3145 -5.3510 42 1 3.0969 -1.9895 -6.6436 43 1 4.5477 -3.2359 -4.8552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338033426.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:47 Heat of formation + Delta-G solvation = -39.806786 kcal Electronic energy + Delta-G solvation = -26285.289246 eV Core-core repulsion = 22456.717658 eV Total energy + Delta-G solvation = -3828.571588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.47236 -41.19924 -40.28238 -38.60076 -35.45380 -34.57111 -33.49330 -31.95955 -31.82520 -30.09433 -29.65689 -27.64193 -27.10148 -24.94916 -23.04077 -22.19448 -21.74300 -21.10594 -20.96894 -19.83954 -18.97998 -18.04238 -17.83048 -17.04173 -16.86425 -16.55753 -16.49914 -16.27176 -15.85848 -15.37321 -14.99208 -14.73559 -14.68963 -14.66291 -14.39974 -14.34625 -14.15335 -13.68499 -13.56144 -13.37284 -13.24822 -13.15747 -13.07465 -12.86041 -12.64824 -12.51968 -12.28244 -11.82627 -11.70629 -11.23761 -11.11845 -10.99885 -10.31410 -10.25472 -10.04599 -9.90192 -9.22932 -8.64766 -8.33748 -6.11118 0.38540 1.25438 1.44278 1.44881 1.52620 1.55530 1.68610 1.77769 2.14515 2.26669 2.28087 2.30409 3.00834 3.21336 3.30933 3.35486 3.63751 3.88014 3.93174 3.98205 4.08055 4.21319 4.26772 4.33551 4.36180 4.38996 4.45434 4.54202 4.55211 4.63463 4.84878 4.87417 4.99799 5.07471 5.15888 5.25577 5.33736 5.39668 5.43245 5.71862 5.91361 6.20627 6.22320 6.42549 6.46047 6.93434 7.08248 7.20375 8.74850 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.002486 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.500908 B =11258.450077 C =12595.867084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.091 0.909 4 C -0.119 4.119 5 C 0.140 3.860 6 H 0.085 0.915 7 N -0.698 5.698 8 C 0.539 3.461 9 O -0.560 6.560 10 C -0.130 4.130 11 S -0.152 6.152 12 C -0.545 4.545 13 H 0.084 0.916 14 C 0.014 3.986 15 N -0.911 5.911 16 Si 0.995 3.005 17 H -0.263 1.263 18 H -0.282 1.282 19 H -0.261 1.261 20 C 0.075 3.925 21 N -0.612 5.612 22 C 0.603 3.397 23 O -0.562 6.562 24 C -0.085 4.085 25 C -0.122 4.122 26 C -0.223 4.223 27 C 0.032 3.968 28 N -0.538 5.538 29 H 0.424 0.576 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.423 0.577 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.270 0.730 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.143 0.857 42 H 0.164 0.836 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 21.219 -6.767 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.109 0.891 4 C -0.157 4.157 5 C 0.033 3.967 6 H 0.103 0.897 7 N -0.352 5.352 8 C 0.325 3.675 9 O -0.438 6.438 10 C -0.282 4.282 11 S 0.075 5.925 12 C -0.693 4.693 13 H 0.102 0.898 14 C -0.191 4.191 15 N -0.548 5.548 16 Si 0.817 3.183 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.186 1.186 20 C -0.050 4.050 21 N -0.346 5.346 22 C 0.395 3.605 23 O -0.442 6.442 24 C -0.198 4.198 25 C -0.149 4.149 26 C -0.246 4.246 27 C -0.105 4.105 28 N -0.139 5.139 29 H 0.267 0.733 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.262 0.738 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.161 0.839 42 H 0.182 0.818 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.399 20.433 -7.811 22.007 hybrid contribution 1.747 -0.012 1.492 2.297 sum -0.652 20.421 -6.319 21.387 Atomic orbital electron populations 1.22167 0.94669 1.01982 1.03300 1.21737 0.94977 0.96845 0.83232 0.89139 1.23048 1.04670 0.91489 0.96482 1.21950 0.91243 0.94614 0.88858 0.89685 1.45527 1.33966 1.04918 1.50831 1.20110 0.84352 0.82780 0.80288 1.90728 1.42281 1.65228 1.45513 1.23378 1.01325 0.99702 1.03750 1.85611 1.43522 0.97614 1.65706 1.23175 1.16598 0.95284 1.34250 0.89762 1.26089 0.99949 0.95680 0.97379 1.70171 1.39622 1.01963 1.43044 0.85050 0.77761 0.77024 0.78467 1.18717 1.20705 1.18592 1.23083 0.96358 0.88520 0.97046 1.48358 1.50814 1.30437 1.04974 1.16899 0.80664 0.82234 0.80747 1.90789 1.37187 1.32847 1.83366 1.20316 1.01269 1.02907 0.95302 1.21530 1.01329 1.01244 0.90825 1.21228 1.00911 1.01779 1.00698 1.22775 1.02734 1.01980 0.82980 1.42741 1.29488 1.31609 1.10014 0.73319 0.89040 0.93129 0.93399 0.86644 0.87272 0.73826 0.86699 0.86976 0.92070 0.91341 0.88218 0.83896 0.81814 0.77872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.04 71.98 0.65 -2.20 16 2 C 0.13 2.08 3.52 45.34 0.16 2.24 16 3 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.12 -1.21 6.13 31.78 0.19 -1.02 16 5 C 0.14 2.40 3.45 46.55 0.16 2.56 16 6 H 0.08 2.00 7.54 -2.38 -0.02 1.98 16 7 N -0.70 -12.44 5.21 -435.19 -2.27 -14.70 16 8 C 0.54 16.41 7.85 87.66 0.69 17.10 16 9 O -0.56 -22.80 15.50 -3.02 -0.05 -22.84 16 10 C -0.13 -4.44 6.16 71.23 0.44 -4.00 16 11 S -0.15 -7.85 20.57 -56.49 -1.16 -9.01 16 12 C -0.55 -29.48 9.50 67.95 0.65 -28.84 16 13 H 0.08 4.18 7.80 -2.91 -0.02 4.15 16 14 C 0.01 0.76 5.49 84.86 0.47 1.23 16 15 N -0.91 -54.33 13.22 21.65 0.29 -54.04 16 16 Si 1.00 41.83 29.55 68.60 2.03 43.86 16 17 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 20 C 0.07 1.27 4.96 87.02 0.43 1.70 16 21 N -0.61 -12.14 3.08 -791.78 -2.44 -14.58 16 22 C 0.60 15.61 7.63 86.44 0.66 16.27 16 23 O -0.56 -17.79 15.63 -4.35 -0.07 -17.86 16 24 C -0.09 -2.04 6.82 40.35 0.28 -1.76 16 25 C -0.12 -2.81 10.66 22.57 0.24 -2.57 16 26 C -0.22 -4.04 10.81 22.01 0.24 -3.80 16 27 C 0.03 0.52 11.89 83.48 0.99 1.51 16 28 N -0.54 -10.08 5.36 -183.62 -0.98 -11.06 16 29 H 0.42 6.69 5.37 -92.71 -0.50 6.19 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.16 6.62 -2.38 -0.02 1.14 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.12 0.56 8.00 -2.39 -0.02 0.55 16 34 H 0.11 0.92 7.83 -2.39 -0.02 0.90 16 35 H 0.42 4.29 8.57 -92.70 -0.79 3.50 16 36 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 37 H 0.11 3.40 8.14 -2.40 -0.02 3.38 16 38 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 39 H 0.07 1.41 6.22 -2.39 -0.01 1.39 16 40 H 0.10 1.23 7.84 -2.38 -0.02 1.21 16 41 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.20 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -81.07 372.34 1.35 -79.72 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.24 Total: 22.12 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 6.24 Total: -1.60 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -5.41 Total: -94.39 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.11 Total: -40.70 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.16 Total: -9.01 kcal Total: -81.07 1.35 -79.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338033426.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.914 kcal (2) G-P(sol) polarization free energy of solvation -81.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds