Wall clock time and date at job start Tue Mar 31 2020 20:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.41505 * 2 1 4 4 C 1.55128 * 110.34307 * 122.44317 * 2 1 3 5 5 C 1.55156 * 101.48614 * 156.06194 * 4 2 1 6 6 H 1.08997 * 110.72552 * 82.69296 * 5 4 2 7 7 N 1.46504 * 110.87257 * 205.89996 * 5 4 2 8 8 C 1.34768 * 119.99947 * 200.06066 * 7 5 4 9 9 O 1.21286 * 120.00273 * 0.02562 * 8 7 5 10 10 C 1.50702 * 120.00220 * 179.97438 * 8 7 5 11 11 S 1.81000 * 109.47638 * 180.02562 * 10 8 7 12 12 C 1.76191 * 100.00166 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00226 * 359.97438 * 12 11 10 14 14 C 1.38803 * 120.00398 * 180.02562 * 12 11 10 15 15 N 1.31631 * 119.99315 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00404 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47358 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47159 * 119.99931 * 16 14 12 19 19 H 1.48498 * 109.47317 * 239.99857 * 16 14 12 20 20 C 1.54330 * 102.93736 * 324.32920 * 5 4 2 21 21 N 1.47018 * 107.27472 * 22.19612 * 20 5 4 22 22 C 1.34767 * 125.65165 * 181.01708 * 21 20 5 23 23 O 1.21690 * 120.00349 * 180.02562 * 22 21 20 24 24 C 1.46684 * 120.00098 * 0.02979 * 22 21 20 25 25 C 1.37870 * 126.23813 * 180.17546 * 24 22 21 26 26 C 1.39828 * 107.08722 * 180.23386 * 25 24 22 27 27 C 1.35453 * 107.86576 * 359.75451 * 26 25 24 28 28 N 1.35537 * 108.87115 * 0.02562 * 27 26 25 29 29 H 0.97001 * 125.67560 * 179.97438 * 28 27 26 30 30 H 1.08992 * 109.47188 * 180.84237 * 1 2 3 31 31 H 1.09005 * 109.46967 * 300.83868 * 1 2 3 32 32 H 1.09002 * 109.47218 * 60.84058 * 1 2 3 33 33 H 1.08996 * 111.19208 * 37.95348 * 4 2 1 34 34 H 1.08998 * 110.90632 * 274.03626 * 4 2 1 35 35 H 0.97001 * 119.99799 * 20.05712 * 7 5 4 36 36 H 1.09001 * 109.47017 * 300.00514 * 10 8 7 37 37 H 1.09001 * 109.46866 * 59.99608 * 10 8 7 38 38 H 0.97002 * 119.99894 * 179.97438 * 15 14 12 39 39 H 1.08993 * 109.88381 * 262.77316 * 20 5 4 40 40 H 1.09001 * 110.00416 * 141.68572 * 20 5 4 41 41 H 1.08007 * 126.45506 * 359.97438 * 25 24 22 42 42 H 1.08003 * 126.06704 * 179.78197 * 26 25 24 43 43 H 1.07998 * 125.56322 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0693 -0.7803 1.2275 5 6 3.4797 -1.1972 0.7333 6 1 4.1930 -0.3849 0.8728 7 7 3.9361 -2.4087 1.4191 8 6 5.2492 -2.7107 1.4513 9 8 6.0531 -1.9792 0.9130 10 6 5.7188 -3.9566 2.1572 11 16 7.5196 -4.0820 2.0261 12 6 7.7871 -5.5819 2.9111 13 1 6.9492 -6.1160 3.3343 14 6 9.0748 -6.0766 3.0653 15 7 10.0960 -5.4254 2.5499 16 14 9.3584 -7.6663 4.0042 17 1 8.0566 -8.1992 4.4802 18 1 10.0037 -8.6610 3.1099 19 1 10.2406 -7.4025 5.1692 20 6 3.2524 -1.4724 -0.7681 21 7 2.0430 -0.7384 -1.1683 22 6 1.4972 -0.7363 -2.4005 23 8 0.4904 -0.0886 -2.6189 24 6 2.1167 -1.5146 -3.4785 25 6 1.6716 -1.6016 -4.7804 26 6 2.5519 -2.4493 -5.4598 27 6 3.5016 -2.8521 -4.5820 28 7 3.2501 -2.2888 -3.3751 29 1 3.7788 -2.4135 -2.5714 30 1 -0.3633 -1.0275 0.0151 31 1 -0.3633 0.5268 0.8824 32 1 -0.3634 0.5007 -0.8974 33 1 1.4549 -1.6554 1.4391 34 1 2.1373 -0.1321 2.1012 35 1 3.2932 -2.9935 1.8499 36 1 5.4338 -3.9080 3.2081 37 1 5.2587 -4.8306 1.6961 38 1 10.9960 -5.7708 2.6580 39 1 3.1090 -2.5404 -0.9316 40 1 4.1075 -1.1208 -1.3454 41 1 0.8037 -1.1111 -5.1961 42 1 2.4865 -2.7324 -6.5001 43 1 4.3248 -3.5139 -4.8070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338033428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:50 Heat of formation + Delta-G solvation = -13.212708 kcal Electronic energy + Delta-G solvation = -26323.925883 eV Core-core repulsion = 22496.507501 eV Total energy + Delta-G solvation = -3827.418382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66860 -40.30479 -39.18793 -37.56974 -34.37843 -32.73507 -32.51872 -31.06889 -30.89831 -29.24063 -28.57728 -26.33614 -25.58216 -23.95501 -22.06908 -21.57729 -20.64830 -20.31237 -20.13261 -17.99364 -17.83032 -17.25018 -16.59706 -16.40872 -15.71700 -15.42741 -15.14316 -14.88606 -14.56829 -14.19663 -14.05064 -13.97394 -13.77067 -13.63864 -13.38838 -12.95585 -12.83721 -12.74550 -12.59400 -12.51193 -12.38061 -12.19034 -11.80826 -11.55550 -11.26154 -11.14022 -11.11521 -10.83325 -10.06579 -9.90700 -9.65271 -9.28487 -9.24397 -9.15347 -9.06073 -8.43736 -8.35918 -6.61480 -6.31022 -4.02583 1.25464 2.41683 2.54443 2.79879 2.86286 2.97880 3.15305 3.16749 3.21634 3.25506 3.52081 3.95237 4.07324 4.11451 4.43892 4.56944 4.65954 4.78844 4.90884 4.94838 5.00555 5.04761 5.07133 5.14535 5.22991 5.25387 5.35296 5.39999 5.46090 5.63813 5.72800 5.78474 5.78910 5.87366 5.98859 5.99417 6.18771 6.32022 6.50893 6.71907 7.08050 7.17064 7.42473 7.51300 7.86630 8.26220 8.34292 9.14857 10.76402 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.002527 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.883073 B =11079.844875 C =12427.521692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.083 0.917 4 C -0.136 4.136 5 C 0.142 3.858 6 H 0.109 0.891 7 N -0.731 5.731 8 C 0.533 3.467 9 O -0.513 6.513 10 C -0.155 4.155 11 S -0.059 6.059 12 C -0.537 4.537 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.075 3.925 21 N -0.617 5.617 22 C 0.610 3.390 23 O -0.527 6.527 24 C -0.061 4.061 25 C -0.106 4.106 26 C -0.215 4.215 27 C 0.026 3.974 28 N -0.542 5.542 29 H 0.419 0.581 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.402 0.598 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.269 0.731 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.536 7.378 -7.664 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.101 0.899 4 C -0.174 4.174 5 C 0.036 3.964 6 H 0.127 0.873 7 N -0.385 5.385 8 C 0.319 3.681 9 O -0.386 6.386 10 C -0.306 4.306 11 S 0.168 5.832 12 C -0.685 4.685 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.050 4.050 21 N -0.352 5.352 22 C 0.400 3.600 23 O -0.404 6.404 24 C -0.173 4.173 25 C -0.133 4.133 26 C -0.239 4.239 27 C -0.111 4.111 28 N -0.143 5.143 29 H 0.262 0.738 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.237 0.763 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.482 8.964 -8.591 21.442 hybrid contribution -0.528 -2.407 1.755 3.025 sum -18.010 6.557 -6.836 20.349 Atomic orbital electron populations 1.22179 0.93207 1.02894 1.03966 1.21951 0.95769 0.95578 0.83122 0.89889 1.23245 0.94765 1.01459 0.97977 1.21765 0.96404 0.89213 0.89066 0.87272 1.46023 1.08376 1.25940 1.58199 1.20452 0.81308 0.86888 0.79409 1.90722 1.53169 1.50462 1.44266 1.23547 1.07359 0.96899 1.02747 1.85399 0.92331 1.32608 1.72904 1.22890 0.95760 1.09417 1.40402 0.90837 1.25000 0.94964 0.98028 0.95577 1.70019 0.99211 1.38448 1.42523 0.86107 0.78419 0.81641 0.79280 1.19600 1.20520 1.20513 1.22727 0.87611 0.96833 0.97862 1.48405 1.27958 1.49244 1.09571 1.16695 0.83123 0.80402 0.79731 1.90772 1.24493 1.43723 1.81375 1.20349 0.94222 1.06046 0.96732 1.21299 1.00580 1.00375 0.91011 1.20916 0.98038 1.04743 1.00211 1.22195 1.02189 1.01898 0.84824 1.42800 1.22327 1.36995 1.12141 0.73795 0.92552 0.91751 0.89187 0.89593 0.88584 0.76274 0.88984 0.89111 0.92154 0.90868 0.90412 0.83553 0.83870 0.81012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.71 37.16 0.32 -1.10 16 2 C 0.14 1.18 3.78 -66.30 -0.25 0.93 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.14 -0.93 6.12 -24.46 -0.15 -1.08 16 5 C 0.14 1.33 3.23 -66.09 -0.21 1.12 16 6 H 0.11 1.18 7.69 -51.93 -0.40 0.78 16 7 N -0.73 -7.70 5.13 -52.03 -0.27 -7.97 16 8 C 0.53 8.46 7.84 -10.99 -0.09 8.38 16 9 O -0.51 -10.11 15.59 5.55 0.09 -10.03 16 10 C -0.15 -2.79 6.16 36.01 0.22 -2.57 16 11 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 12 C -0.54 -14.61 9.50 30.94 0.29 -14.32 16 13 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -25.29 13.22 55.49 0.73 -24.56 16 16 Si 0.92 20.71 29.55 -169.99 -5.02 15.68 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 20 C 0.07 0.72 4.86 -3.06 -0.01 0.71 16 21 N -0.62 -6.35 3.24 -164.44 -0.53 -6.88 16 22 C 0.61 7.64 7.60 -12.86 -0.10 7.55 16 23 O -0.53 -7.73 14.53 5.20 0.08 -7.66 16 24 C -0.06 -0.72 6.89 -81.98 -0.56 -1.28 16 25 C -0.11 -1.19 10.65 -39.12 -0.42 -1.61 16 26 C -0.21 -2.06 10.81 -39.98 -0.43 -2.50 16 27 C 0.03 0.24 11.89 -16.91 -0.20 0.04 16 28 N -0.54 -5.52 5.61 -9.39 -0.05 -5.57 16 29 H 0.42 3.92 4.92 -40.82 -0.20 3.72 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.99 5.88 -51.93 -0.31 0.69 16 33 H 0.09 0.53 7.94 -51.93 -0.41 0.12 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.40 3.18 8.53 -40.82 -0.35 2.83 16 36 H 0.09 1.54 8.14 -51.91 -0.42 1.11 16 37 H 0.09 1.50 8.14 -51.92 -0.42 1.07 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.07 0.69 6.97 -51.93 -0.36 0.32 16 40 H 0.08 0.81 7.23 -51.93 -0.38 0.43 16 41 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 42 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 370.61 15.07 5.59 5.59 Total: -1.00 -34.61 370.61 -9.04 -43.66 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.75 Total: 5.25 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.68 Total: -3.81 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -0.12 Total: -44.98 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.16 Total: -17.68 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.61 -9.04 -43.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338033428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.445 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds