Wall clock time and date at job start Tue Mar 31 2020 20:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.41505 * 2 1 4 4 C 1.55128 * 110.34307 * 122.44317 * 2 1 3 5 5 C 1.55156 * 101.48614 * 156.06194 * 4 2 1 6 6 H 1.08997 * 110.72552 * 82.69296 * 5 4 2 7 7 N 1.46504 * 110.87257 * 205.89996 * 5 4 2 8 8 C 1.34768 * 119.99947 * 200.06066 * 7 5 4 9 9 O 1.21286 * 120.00273 * 0.02562 * 8 7 5 10 10 C 1.50702 * 120.00220 * 179.97438 * 8 7 5 11 11 S 1.81000 * 109.47638 * 180.02562 * 10 8 7 12 12 C 1.76191 * 100.00166 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00226 * 359.97438 * 12 11 10 14 14 C 1.38803 * 120.00398 * 180.02562 * 12 11 10 15 15 N 1.31631 * 119.99315 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00404 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47358 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47159 * 119.99931 * 16 14 12 19 19 H 1.48498 * 109.47317 * 239.99857 * 16 14 12 20 20 C 1.54330 * 102.93736 * 324.32920 * 5 4 2 21 21 N 1.47018 * 107.27472 * 22.19612 * 20 5 4 22 22 C 1.34767 * 125.65165 * 181.01708 * 21 20 5 23 23 O 1.21690 * 120.00349 * 180.02562 * 22 21 20 24 24 C 1.46684 * 120.00098 * 0.02979 * 22 21 20 25 25 C 1.37870 * 126.23813 * 180.17546 * 24 22 21 26 26 C 1.39828 * 107.08722 * 180.23386 * 25 24 22 27 27 C 1.35453 * 107.86576 * 359.75451 * 26 25 24 28 28 N 1.35537 * 108.87115 * 0.02562 * 27 26 25 29 29 H 0.97001 * 125.67560 * 179.97438 * 28 27 26 30 30 H 1.08992 * 109.47188 * 180.84237 * 1 2 3 31 31 H 1.09005 * 109.46967 * 300.83868 * 1 2 3 32 32 H 1.09002 * 109.47218 * 60.84058 * 1 2 3 33 33 H 1.08996 * 111.19208 * 37.95348 * 4 2 1 34 34 H 1.08998 * 110.90632 * 274.03626 * 4 2 1 35 35 H 0.97001 * 119.99799 * 20.05712 * 7 5 4 36 36 H 1.09001 * 109.47017 * 300.00514 * 10 8 7 37 37 H 1.09001 * 109.46866 * 59.99608 * 10 8 7 38 38 H 0.97002 * 119.99894 * 179.97438 * 15 14 12 39 39 H 1.08993 * 109.88381 * 262.77316 * 20 5 4 40 40 H 1.09001 * 110.00416 * 141.68572 * 20 5 4 41 41 H 1.08007 * 126.45506 * 359.97438 * 25 24 22 42 42 H 1.08003 * 126.06704 * 179.78197 * 26 25 24 43 43 H 1.07998 * 125.56322 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0693 -0.7803 1.2275 5 6 3.4797 -1.1972 0.7333 6 1 4.1930 -0.3849 0.8728 7 7 3.9361 -2.4087 1.4191 8 6 5.2492 -2.7107 1.4513 9 8 6.0531 -1.9792 0.9130 10 6 5.7188 -3.9566 2.1572 11 16 7.5196 -4.0820 2.0261 12 6 7.7871 -5.5819 2.9111 13 1 6.9492 -6.1160 3.3343 14 6 9.0748 -6.0766 3.0653 15 7 10.0960 -5.4254 2.5499 16 14 9.3584 -7.6663 4.0042 17 1 8.0566 -8.1992 4.4802 18 1 10.0037 -8.6610 3.1099 19 1 10.2406 -7.4025 5.1692 20 6 3.2524 -1.4724 -0.7681 21 7 2.0430 -0.7384 -1.1683 22 6 1.4972 -0.7363 -2.4005 23 8 0.4904 -0.0886 -2.6189 24 6 2.1167 -1.5146 -3.4785 25 6 1.6716 -1.6016 -4.7804 26 6 2.5519 -2.4493 -5.4598 27 6 3.5016 -2.8521 -4.5820 28 7 3.2501 -2.2888 -3.3751 29 1 3.7788 -2.4135 -2.5714 30 1 -0.3633 -1.0275 0.0151 31 1 -0.3633 0.5268 0.8824 32 1 -0.3634 0.5007 -0.8974 33 1 1.4549 -1.6554 1.4391 34 1 2.1373 -0.1321 2.1012 35 1 3.2932 -2.9935 1.8499 36 1 5.4338 -3.9080 3.2081 37 1 5.2587 -4.8306 1.6961 38 1 10.9960 -5.7708 2.6580 39 1 3.1090 -2.5404 -0.9316 40 1 4.1075 -1.1208 -1.3454 41 1 0.8037 -1.1111 -5.1961 42 1 2.4865 -2.7324 -6.5001 43 1 4.3248 -3.5139 -4.8070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338033428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:49 Heat of formation + Delta-G solvation = -37.216141 kcal Electronic energy + Delta-G solvation = -26324.966750 eV Core-core repulsion = 22496.507501 eV Total energy + Delta-G solvation = -3828.459249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.48331 -41.21164 -40.29855 -38.54948 -35.44493 -34.57727 -33.49603 -32.01178 -31.86238 -30.09422 -29.70422 -27.65088 -27.06904 -24.80571 -22.96210 -22.37708 -21.64403 -21.13859 -20.99190 -19.83596 -18.66301 -18.18969 -17.63034 -17.56675 -16.87484 -16.68772 -16.38896 -16.28313 -15.86415 -15.38739 -14.95919 -14.80387 -14.69154 -14.67547 -14.43393 -14.38642 -13.85620 -13.59842 -13.54470 -13.27840 -13.23088 -13.15178 -13.10938 -12.92088 -12.68972 -12.57295 -12.26796 -11.98687 -11.69707 -11.15636 -11.00315 -10.97390 -10.29081 -10.25849 -10.07489 -9.90366 -9.23532 -8.64888 -8.34872 -6.11602 0.38873 1.25648 1.41295 1.45138 1.52583 1.56438 1.69466 1.77234 2.14696 2.24409 2.27443 2.31060 2.99981 3.18216 3.31019 3.33525 3.63188 3.86221 3.87581 3.97902 4.12693 4.23121 4.25566 4.32251 4.36313 4.38777 4.45334 4.52320 4.54892 4.66018 4.81480 4.87885 5.04587 5.09796 5.14053 5.25085 5.35372 5.43270 5.46053 5.72242 5.92130 6.20395 6.23043 6.40285 6.43465 6.95848 7.07634 7.18003 8.74188 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.002527 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.883073 B =11079.844875 C =12427.521692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.131 3.869 3 H 0.086 0.914 4 C -0.118 4.118 5 C 0.142 3.858 6 H 0.097 0.903 7 N -0.702 5.702 8 C 0.539 3.461 9 O -0.556 6.556 10 C -0.132 4.132 11 S -0.147 6.147 12 C -0.544 4.544 13 H 0.083 0.917 14 C 0.014 3.986 15 N -0.910 5.910 16 Si 0.995 3.005 17 H -0.257 1.257 18 H -0.275 1.275 19 H -0.276 1.276 20 C 0.078 3.922 21 N -0.613 5.613 22 C 0.603 3.397 23 O -0.558 6.558 24 C -0.086 4.086 25 C -0.120 4.120 26 C -0.221 4.221 27 C 0.029 3.971 28 N -0.541 5.541 29 H 0.422 0.578 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.421 0.579 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.270 0.730 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.145 0.855 42 H 0.165 0.835 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.950 5.996 -6.487 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 H 0.104 0.896 4 C -0.156 4.156 5 C 0.036 3.964 6 H 0.115 0.885 7 N -0.356 5.356 8 C 0.325 3.675 9 O -0.433 6.433 10 C -0.284 4.284 11 S 0.080 5.920 12 C -0.692 4.692 13 H 0.101 0.899 14 C -0.191 4.191 15 N -0.547 5.547 16 Si 0.817 3.183 17 H -0.180 1.180 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.047 4.047 21 N -0.347 5.347 22 C 0.395 3.605 23 O -0.437 6.437 24 C -0.199 4.199 25 C -0.147 4.147 26 C -0.244 4.244 27 C -0.108 4.108 28 N -0.142 5.142 29 H 0.265 0.735 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.137 0.863 35 H 0.259 0.741 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.163 0.837 42 H 0.182 0.818 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -18.948 7.576 -7.384 21.701 hybrid contribution -0.191 -1.913 1.323 2.334 sum -19.139 5.663 -6.061 20.859 Atomic orbital electron populations 1.22081 0.93070 1.02588 1.03748 1.22166 0.95910 0.95968 0.83108 0.89626 1.23224 0.92546 1.02185 0.97673 1.21809 0.97649 0.88031 0.88902 0.88471 1.45665 1.06679 1.26276 1.57028 1.20065 0.82642 0.85831 0.78932 1.90722 1.54779 1.51573 1.46276 1.23391 1.01304 0.99058 1.04600 1.85548 1.00098 1.32996 1.73364 1.23232 0.96313 1.09581 1.40104 0.89923 1.26075 0.94698 1.01793 0.96510 1.70177 0.99747 1.40532 1.44253 0.84951 0.78800 0.76848 0.77656 1.18025 1.20084 1.20143 1.22677 0.87059 0.97060 0.97912 1.48419 1.27808 1.48974 1.09484 1.16868 0.82924 0.80267 0.80446 1.90755 1.25828 1.45136 1.81991 1.20399 0.95278 1.07229 0.96949 1.21526 1.01033 1.00846 0.91313 1.21226 0.97618 1.04271 1.01330 1.22763 1.02503 1.01330 0.84157 1.42825 1.21879 1.36784 1.12682 0.73518 0.92918 0.89358 0.91885 0.87953 0.86317 0.74116 0.87073 0.87026 0.92055 0.90247 0.91361 0.83673 0.81753 0.78171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.71 71.98 0.63 -1.87 16 2 C 0.13 2.02 3.78 45.54 0.17 2.19 16 3 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.12 -1.24 6.12 32.06 0.20 -1.04 16 5 C 0.14 2.37 3.23 46.18 0.15 2.52 16 6 H 0.10 1.97 7.69 -2.39 -0.02 1.95 16 7 N -0.70 -12.84 5.13 -436.91 -2.24 -15.08 16 8 C 0.54 16.28 7.84 87.66 0.69 16.97 16 9 O -0.56 -21.90 15.59 -3.05 -0.05 -21.95 16 10 C -0.13 -4.54 6.16 71.24 0.44 -4.10 16 11 S -0.15 -7.58 20.57 -56.49 -1.16 -8.74 16 12 C -0.54 -29.47 9.50 67.96 0.65 -28.83 16 13 H 0.08 4.15 7.80 -2.91 -0.02 4.13 16 14 C 0.01 0.77 5.49 84.86 0.47 1.24 16 15 N -0.91 -54.00 13.22 21.65 0.29 -53.71 16 16 Si 1.00 41.97 29.55 68.60 2.03 44.00 16 17 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 18 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 20 C 0.08 1.41 4.86 86.73 0.42 1.84 16 21 N -0.61 -12.20 3.24 -792.40 -2.57 -14.77 16 22 C 0.60 15.32 7.60 86.45 0.66 15.98 16 23 O -0.56 -16.91 14.53 -4.32 -0.06 -16.98 16 24 C -0.09 -2.05 6.89 40.35 0.28 -1.77 16 25 C -0.12 -2.71 10.65 22.57 0.24 -2.47 16 26 C -0.22 -4.00 10.81 22.01 0.24 -3.76 16 27 C 0.03 0.50 11.89 83.48 0.99 1.49 16 28 N -0.54 -10.65 5.61 -183.61 -1.03 -11.68 16 29 H 0.42 7.60 4.92 -92.71 -0.46 7.14 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 33 H 0.10 0.82 7.94 -2.39 -0.02 0.80 16 34 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.42 4.93 8.53 -92.71 -0.79 4.14 16 36 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 38 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 39 H 0.08 1.36 6.97 -2.39 -0.02 1.34 16 40 H 0.07 1.40 7.23 -2.39 -0.02 1.38 16 41 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 42 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 43 H 0.20 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -78.06 370.61 1.22 -76.84 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -0.19 Total: 23.69 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 6.21 Total: -1.63 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -5.55 Total: -95.24 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.11 Total: -38.92 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.16 Total: -8.74 kcal Total: -78.06 1.22 -76.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338033428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.628 kcal (2) G-P(sol) polarization free energy of solvation -78.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds