Wall clock time and date at job start Tue Mar 31 2020 20:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34235 * 116.99369 * 2 1 4 4 O 1.20813 * 120.00231 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99526 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.46970 * 205.00216 * 5 3 2 7 7 C 1.52991 * 109.46925 * 84.99824 * 5 3 2 8 8 O 1.42895 * 109.47842 * 299.99763 * 7 5 3 9 9 N 1.46503 * 109.46715 * 324.99981 * 5 3 2 10 10 C 1.34783 * 119.99585 * 179.97438 * 9 5 3 11 11 O 1.21284 * 119.99976 * 0.02562 * 10 9 5 12 12 C 1.50699 * 120.00059 * 179.97438 * 10 9 5 13 13 C 1.50699 * 109.47151 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96224 * 270.02423 * 13 12 10 15 15 C 1.38281 * 120.13505 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96539 * 89.99818 * 13 12 10 28 28 H 1.08991 * 109.47397 * 59.99945 * 1 2 3 29 29 H 1.08997 * 109.47021 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47006 * 299.99895 * 1 2 3 31 31 H 1.08995 * 109.47243 * 179.97438 * 6 5 3 32 32 H 1.09008 * 109.46638 * 299.99961 * 6 5 3 33 33 H 1.08998 * 109.47174 * 59.99414 * 6 5 3 34 34 H 1.09002 * 109.47340 * 60.00444 * 7 5 3 35 35 H 1.09004 * 109.46985 * 179.97438 * 7 5 3 36 36 H 0.96692 * 114.00886 * 179.97438 * 8 7 5 37 37 H 0.97001 * 120.00603 * 0.02562 * 9 5 3 38 38 H 1.09004 * 109.46756 * 60.00007 * 12 10 9 39 39 H 1.08998 * 109.46908 * 300.00650 * 12 10 9 40 40 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 41 41 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 42 42 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 43 43 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.03547 * 0.04988 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0074 2.6071 0.6092 7 6 4.0816 1.1764 -1.4377 8 8 3.6697 -0.0677 -2.0073 9 7 4.1135 0.1705 0.7912 10 6 5.4474 0.0381 0.9315 11 8 6.1947 0.8336 0.4026 12 6 6.0103 -1.0977 1.7465 13 6 7.5153 -1.0188 1.7458 14 6 8.2407 -1.6689 0.7637 15 6 9.6217 -1.5985 0.7593 16 6 10.2807 -0.8730 1.7325 17 6 9.5556 -0.2240 2.7230 18 8 10.2008 0.4849 3.6843 19 6 11.5475 0.4205 3.6924 20 1 12.0675 -0.1091 2.9079 21 6 12.2648 1.0342 4.7080 22 7 11.6313 1.6788 5.6639 23 14 14.1306 0.9444 4.7196 24 1 14.6636 1.5632 3.4794 25 1 14.6540 1.6744 5.9020 26 1 14.5574 -0.4764 4.7868 27 6 8.1685 -0.2973 2.7251 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 5.0959 2.6641 0.6092 32 1 3.6002 3.4289 0.0200 33 1 3.6402 2.6773 1.6330 34 1 3.6745 1.9982 -2.0269 35 1 5.1701 1.2340 -1.4382 36 1 3.9616 -0.1985 -2.9198 37 1 3.5158 -0.4659 1.2139 38 1 5.6956 -2.0469 1.3127 39 1 5.6435 -1.0268 2.7704 40 1 7.7274 -2.2327 -0.0013 41 1 10.1853 -2.1075 -0.0085 42 1 11.3590 -0.8142 1.7256 43 1 12.1331 2.1079 6.3745 44 1 7.6016 0.2097 3.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417949490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:03 Heat of formation + Delta-G solvation = -163.462992 kcal Electronic energy + Delta-G solvation = -29159.221652 eV Core-core repulsion = 24850.242307 eV Total energy + Delta-G solvation = -4308.979345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.31204 -39.87377 -38.84343 -37.37336 -36.80686 -36.38330 -35.02380 -32.54411 -32.15774 -31.02754 -29.11875 -28.36608 -26.98051 -26.45101 -25.20593 -24.24497 -21.76596 -21.40069 -20.42287 -19.87636 -18.65824 -17.79385 -17.54705 -17.29827 -16.93524 -16.82726 -16.23841 -15.56412 -15.41299 -14.97228 -14.61157 -14.46028 -14.27647 -14.10179 -13.72700 -13.58103 -13.40699 -13.38266 -12.96175 -12.62170 -12.52949 -12.48577 -12.35858 -12.28272 -11.94026 -11.74818 -11.47737 -11.21960 -11.14367 -10.86636 -10.78997 -10.73612 -10.57772 -10.43186 -10.40863 -9.54291 -9.29258 -9.27567 -8.78700 -8.01762 -7.16532 -6.39475 -3.98484 1.69556 2.13639 2.24528 2.44580 2.70515 3.01441 3.16430 3.17924 3.20055 3.72085 4.00898 4.28067 4.54326 4.58111 4.75294 4.83628 4.85205 4.95993 5.00431 5.15275 5.16757 5.18358 5.29600 5.43202 5.46123 5.54256 5.58067 5.72524 5.80235 5.91670 5.98795 6.05205 6.19809 6.22840 6.39003 6.70804 6.96984 7.12129 7.24562 7.31903 7.34829 7.39388 7.42559 7.49376 7.88091 8.05589 8.24264 9.06288 9.77546 10.78796 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.002343 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.061049 B =11947.119450 C =12452.313892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.343 6.343 3 C 0.473 3.527 4 O -0.498 6.498 5 C 0.200 3.800 6 C -0.159 4.159 7 C 0.062 3.938 8 O -0.562 6.562 9 N -0.721 5.721 10 C 0.525 3.475 11 O -0.516 6.516 12 C -0.092 4.092 13 C -0.032 4.032 14 C -0.195 4.195 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.154 3.846 18 O -0.180 6.180 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.174 4.174 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.382 0.618 37 H 0.407 0.593 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.125 0.875 43 H 0.270 0.730 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.550 -5.337 -12.438 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.258 6.258 3 C 0.314 3.686 4 O -0.385 6.385 5 C 0.112 3.888 6 C -0.217 4.217 7 C -0.017 4.017 8 O -0.368 6.368 9 N -0.378 5.378 10 C 0.312 3.688 11 O -0.391 6.391 12 C -0.132 4.132 13 C -0.033 4.033 14 C -0.214 4.214 15 C -0.094 4.094 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.083 6.083 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.193 4.193 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.229 0.771 37 H 0.243 0.757 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.529 -4.240 -11.826 23.221 hybrid contribution 0.610 -0.196 -0.453 0.785 sum -18.919 -4.436 -12.279 22.986 Atomic orbital electron populations 1.23314 0.76204 1.03919 1.02514 1.86547 1.23348 1.32704 1.83243 1.23492 0.91180 0.81778 0.72137 1.90690 1.66344 1.36411 1.45012 1.20270 0.84920 0.90737 0.92885 1.22172 1.05190 0.92820 1.01506 1.22627 1.01682 0.86667 0.90714 1.86485 1.79793 1.37754 1.32755 1.45922 1.07689 1.30136 1.54029 1.20747 0.80871 0.86514 0.80619 1.90685 1.58152 1.43188 1.47052 1.20579 0.94275 0.97313 1.01034 1.18635 0.91778 0.97656 0.95244 1.20348 0.93874 1.06557 1.00629 1.20672 0.94031 0.97483 0.97167 1.21170 1.00569 1.04977 0.98275 1.19277 0.91725 0.89982 0.88917 1.83976 1.21275 1.58226 1.44873 1.21261 0.78304 1.36151 1.10987 0.89201 1.25264 1.00412 0.96136 0.94713 1.70027 1.36253 1.32083 1.11656 0.85799 0.80775 0.78754 0.78196 1.19546 1.20336 1.19549 1.19943 0.91837 1.05569 1.01952 0.91876 0.87844 0.91848 0.87994 0.90281 0.91050 0.92501 0.88899 0.77054 0.75706 0.88107 0.88133 0.87925 0.87550 0.85690 0.92062 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.34 -3.34 9.67 -39.39 -0.38 -3.72 16 3 C 0.47 5.34 6.41 36.01 0.23 5.57 16 4 O -0.50 -6.55 15.84 -18.74 -0.30 -6.85 16 5 C 0.20 2.24 0.80 -132.97 -0.11 2.14 16 6 C -0.16 -1.84 7.93 37.16 0.29 -1.55 16 7 C 0.06 0.65 5.72 37.15 0.21 0.87 16 8 O -0.56 -5.47 13.06 -35.23 -0.46 -5.93 16 9 N -0.72 -7.84 4.90 -48.68 -0.24 -8.08 16 10 C 0.53 7.15 7.24 -10.98 -0.08 7.07 16 11 O -0.52 -8.88 12.24 5.55 0.07 -8.82 16 12 C -0.09 -1.19 5.83 -29.04 -0.17 -1.36 16 13 C -0.03 -0.58 4.37 -104.65 -0.46 -1.04 16 14 C -0.20 -3.44 9.70 -39.53 -0.38 -3.83 16 15 C -0.08 -1.43 10.04 -39.61 -0.40 -1.82 16 16 C -0.23 -5.16 9.17 -39.40 -0.36 -5.52 16 17 C 0.15 3.82 6.65 -39.11 -0.26 3.56 16 18 O -0.18 -5.23 9.76 0.05 0.00 -5.23 16 19 C -0.39 -11.10 9.49 30.89 0.29 -10.81 16 20 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 23 Si 0.94 20.81 29.55 -169.99 -5.02 15.78 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 C -0.17 -3.73 9.65 -39.39 -0.38 -4.11 16 28 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 31 H 0.10 1.37 6.17 -51.93 -0.32 1.05 16 32 H 0.08 0.84 7.87 -51.92 -0.41 0.43 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.14 6.17 -51.93 -0.32 0.82 16 36 H 0.38 2.15 9.12 45.56 0.42 2.57 16 37 H 0.41 3.57 7.91 -40.82 -0.32 3.25 16 38 H 0.10 1.03 8.09 -51.93 -0.42 0.61 16 39 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.11 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -35.90 376.50 -5.37 -41.27 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.88 Total: 9.39 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.59 Total: -8.55 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.52 Total: -33.03 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -1.07 Total: -30.54 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.90 -5.37 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417949490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.192 kcal (2) G-P(sol) polarization free energy of solvation -35.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds