Wall clock time and date at job start Tue Mar 31 2020 20:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34235 * 116.99369 * 2 1 4 4 O 1.20813 * 120.00231 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99526 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.46970 * 205.00216 * 5 3 2 7 7 C 1.52991 * 109.46925 * 84.99824 * 5 3 2 8 8 O 1.42895 * 109.47842 * 299.99763 * 7 5 3 9 9 N 1.46503 * 109.46715 * 324.99981 * 5 3 2 10 10 C 1.34783 * 119.99585 * 179.97438 * 9 5 3 11 11 O 1.21284 * 119.99976 * 0.02562 * 10 9 5 12 12 C 1.50699 * 120.00059 * 179.97438 * 10 9 5 13 13 C 1.50699 * 109.47151 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96224 * 270.02423 * 13 12 10 15 15 C 1.38281 * 120.13505 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96539 * 89.99818 * 13 12 10 28 28 H 1.08991 * 109.47397 * 59.99945 * 1 2 3 29 29 H 1.08997 * 109.47021 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47006 * 299.99895 * 1 2 3 31 31 H 1.08995 * 109.47243 * 179.97438 * 6 5 3 32 32 H 1.09008 * 109.46638 * 299.99961 * 6 5 3 33 33 H 1.08998 * 109.47174 * 59.99414 * 6 5 3 34 34 H 1.09002 * 109.47340 * 60.00444 * 7 5 3 35 35 H 1.09004 * 109.46985 * 179.97438 * 7 5 3 36 36 H 0.96692 * 114.00886 * 179.97438 * 8 7 5 37 37 H 0.97001 * 120.00603 * 0.02562 * 9 5 3 38 38 H 1.09004 * 109.46756 * 60.00007 * 12 10 9 39 39 H 1.08998 * 109.46908 * 300.00650 * 12 10 9 40 40 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 41 41 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 42 42 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 43 43 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.03547 * 0.04988 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0074 2.6071 0.6092 7 6 4.0816 1.1764 -1.4377 8 8 3.6697 -0.0677 -2.0073 9 7 4.1135 0.1705 0.7912 10 6 5.4474 0.0381 0.9315 11 8 6.1947 0.8336 0.4026 12 6 6.0103 -1.0977 1.7465 13 6 7.5153 -1.0188 1.7458 14 6 8.2407 -1.6689 0.7637 15 6 9.6217 -1.5985 0.7593 16 6 10.2807 -0.8730 1.7325 17 6 9.5556 -0.2240 2.7230 18 8 10.2008 0.4849 3.6843 19 6 11.5475 0.4205 3.6924 20 1 12.0675 -0.1091 2.9079 21 6 12.2648 1.0342 4.7080 22 7 11.6313 1.6788 5.6639 23 14 14.1306 0.9444 4.7196 24 1 14.6636 1.5632 3.4794 25 1 14.6540 1.6744 5.9020 26 1 14.5574 -0.4764 4.7868 27 6 8.1685 -0.2973 2.7251 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 5.0959 2.6641 0.6092 32 1 3.6002 3.4289 0.0200 33 1 3.6402 2.6773 1.6330 34 1 3.6745 1.9982 -2.0269 35 1 5.1701 1.2340 -1.4382 36 1 3.9616 -0.1985 -2.9198 37 1 3.5158 -0.4659 1.2139 38 1 5.6956 -2.0469 1.3127 39 1 5.6435 -1.0268 2.7704 40 1 7.7274 -2.2327 -0.0013 41 1 10.1853 -2.1075 -0.0085 42 1 11.3590 -0.8142 1.7256 43 1 12.1331 2.1079 6.3745 44 1 7.6016 0.2097 3.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417949490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:02 Heat of formation + Delta-G solvation = -191.237977 kcal Electronic energy + Delta-G solvation = -29160.426066 eV Core-core repulsion = 24850.242307 eV Total energy + Delta-G solvation = -4310.183759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.20127 -41.04444 -40.42200 -38.48096 -37.88486 -37.58640 -35.97494 -34.32626 -33.66812 -32.18186 -30.79279 -29.00209 -28.33365 -27.32603 -27.18290 -25.11019 -23.28170 -22.88936 -21.65190 -20.85347 -19.73317 -19.28124 -18.70140 -18.54324 -18.10655 -17.75228 -17.14483 -16.79148 -16.61204 -16.31828 -16.09436 -15.96559 -15.54697 -15.33077 -15.07440 -14.87367 -14.54929 -14.32072 -14.27159 -13.95556 -13.87881 -13.58074 -13.38135 -13.29185 -13.09363 -12.93014 -12.79654 -12.66099 -12.41208 -12.36173 -12.18476 -12.10741 -11.84422 -11.74480 -11.25823 -11.17169 -10.78259 -10.59227 -10.25052 -9.59407 -8.93646 -8.44857 -6.13102 0.54620 0.79845 0.85609 1.35032 1.46171 1.47592 1.51504 1.66273 2.03145 2.19421 2.87049 2.95362 3.20682 3.47499 3.50159 3.72100 3.82709 4.00873 4.14812 4.15379 4.28475 4.32799 4.33662 4.36521 4.47717 4.52283 4.56867 4.63519 4.63840 4.70657 4.73228 4.78595 5.03994 5.10495 5.15668 5.21026 5.25822 5.35565 5.69422 5.77130 5.80205 6.05439 6.27205 6.45687 6.52261 6.75847 6.99876 7.23991 7.82340 8.78549 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.002343 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.061049 B =11947.119450 C =12452.313892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.344 6.344 3 C 0.479 3.521 4 O -0.521 6.521 5 C 0.195 3.805 6 C -0.156 4.156 7 C 0.068 3.932 8 O -0.569 6.569 9 N -0.705 5.705 10 C 0.527 3.473 11 O -0.558 6.558 12 C -0.090 4.090 13 C -0.023 4.023 14 C -0.177 4.177 15 C -0.074 4.074 16 C -0.247 4.247 17 C 0.111 3.889 18 O -0.235 6.235 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.923 5.923 23 Si 1.018 2.982 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.256 1.256 27 C -0.190 4.190 28 H 0.061 0.939 29 H 0.134 0.866 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.400 0.600 37 H 0.420 0.580 38 H 0.143 0.857 39 H 0.122 0.878 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.116 0.884 43 H 0.272 0.728 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.051 -7.883 -14.698 26.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.259 6.259 3 C 0.321 3.679 4 O -0.409 6.409 5 C 0.107 3.893 6 C -0.214 4.214 7 C -0.011 4.011 8 O -0.378 6.378 9 N -0.361 5.361 10 C 0.315 3.685 11 O -0.435 6.435 12 C -0.130 4.130 13 C -0.024 4.024 14 C -0.195 4.195 15 C -0.092 4.092 16 C -0.266 4.266 17 C 0.061 3.939 18 O -0.142 6.142 19 C -0.489 4.489 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.837 3.163 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.180 1.180 27 C -0.209 4.209 28 H 0.080 0.920 29 H 0.152 0.848 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.250 0.750 37 H 0.258 0.742 38 H 0.161 0.839 39 H 0.140 0.860 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.134 0.866 43 H 0.081 0.919 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.098 -6.852 -14.137 26.304 hybrid contribution 0.747 0.428 0.022 0.862 sum -20.350 -6.423 -14.115 25.586 Atomic orbital electron populations 1.23624 0.74384 1.06004 1.02596 1.86528 1.25083 1.31580 1.82674 1.23355 0.90946 0.81961 0.71605 1.90685 1.66743 1.37241 1.46243 1.20278 0.85292 0.90312 0.93438 1.22091 1.03747 0.93781 1.01755 1.22459 1.00535 0.87580 0.90499 1.86432 1.79856 1.37137 1.34330 1.45715 1.07010 1.30048 1.53342 1.20803 0.81368 0.86136 0.80167 1.90698 1.59268 1.44659 1.48914 1.20683 0.90528 0.98970 1.02772 1.19128 0.94735 0.95160 0.93349 1.20959 0.93521 1.04677 1.00357 1.21115 0.95133 0.96305 0.96640 1.21288 1.00359 1.05924 0.99029 1.19883 0.93197 0.91392 0.89408 1.83935 1.21687 1.61150 1.47420 1.21771 0.78820 1.36613 1.11714 0.88276 1.26589 1.06194 0.95420 0.93950 1.70181 1.38601 1.34308 1.13035 0.84657 0.73417 0.79500 0.78683 1.18318 1.19585 1.18025 1.20212 0.90836 1.06551 1.03310 0.91982 0.84784 0.91669 0.90057 0.89591 0.91147 0.91357 0.90640 0.74985 0.74194 0.83924 0.86041 0.83527 0.83847 0.86635 0.91903 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.48 16 2 O -0.34 -5.74 9.67 -51.36 -0.50 -6.24 16 3 C 0.48 9.91 6.41 71.24 0.46 10.37 16 4 O -0.52 -13.01 15.84 22.00 0.35 -12.66 16 5 C 0.19 4.07 0.80 2.86 0.00 4.07 16 6 C -0.16 -3.58 7.93 71.98 0.57 -3.01 16 7 C 0.07 1.33 5.72 71.98 0.41 1.74 16 8 O -0.57 -9.47 13.06 -148.98 -1.95 -11.41 16 9 N -0.70 -13.60 4.90 -426.32 -2.09 -15.69 16 10 C 0.53 13.15 7.24 87.66 0.63 13.78 16 11 O -0.56 -18.68 12.24 -3.04 -0.04 -18.72 16 12 C -0.09 -2.00 5.83 29.10 0.17 -1.83 16 13 C -0.02 -0.77 4.37 -19.88 -0.09 -0.86 16 14 C -0.18 -5.56 9.70 22.30 0.22 -5.34 16 15 C -0.07 -2.62 10.04 22.25 0.22 -2.40 16 16 C -0.25 -11.20 9.17 22.39 0.21 -10.99 16 17 C 0.11 5.76 6.65 22.58 0.15 5.91 16 18 O -0.23 -14.64 9.76 -22.74 -0.22 -14.86 16 19 C -0.41 -24.80 9.49 67.92 0.64 -24.16 16 20 H 0.10 5.47 5.21 -2.91 -0.02 5.46 16 21 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 22 N -0.92 -57.97 13.67 21.61 0.30 -57.67 16 23 Si 1.02 43.88 29.55 68.60 2.03 45.91 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 27 C -0.19 -8.33 9.65 22.39 0.22 -8.11 16 28 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 29 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 31 H 0.08 2.24 6.17 -2.39 -0.01 2.23 16 32 H 0.09 1.81 7.87 -2.38 -0.02 1.79 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.77 6.17 -2.38 -0.01 1.76 16 36 H 0.40 3.36 9.12 -74.06 -0.68 2.68 16 37 H 0.42 5.96 7.91 -92.71 -0.73 5.22 16 38 H 0.14 2.04 8.09 -2.38 -0.02 2.02 16 39 H 0.12 2.25 8.08 -2.39 -0.02 2.23 16 40 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 42 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 43 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -84.34 376.50 3.01 -81.33 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -0.34 Total: 30.33 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 5.48 Total: -20.31 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -1.79 Total: -73.36 kcal Atomic # 8 Polarization: -61.54 SS G_CDS: -2.35 Total: -63.90 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -84.34 3.01 -81.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417949490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.907 kcal (2) G-P(sol) polarization free energy of solvation -84.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds