Wall clock time and date at job start Tue Mar 31 2020 20:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00226 * 2 1 4 4 O 1.20828 * 120.00090 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00113 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47174 * 84.99730 * 5 3 2 7 7 C 1.52998 * 109.47019 * 204.99353 * 5 3 2 8 8 O 1.42906 * 109.47019 * 65.00126 * 7 5 3 9 9 N 1.46500 * 109.46743 * 324.99537 * 5 3 2 10 10 C 1.34777 * 119.99540 * 179.97438 * 9 5 3 11 11 O 1.21284 * 120.00287 * 0.02562 * 10 9 5 12 12 C 1.50704 * 119.99759 * 179.97438 * 10 9 5 13 13 C 1.50707 * 109.46962 * 180.02562 * 12 10 9 14 14 C 1.38319 * 119.96732 * 269.72443 * 13 12 10 15 15 C 1.38271 * 120.14081 * 179.76831 * 14 13 12 16 16 C 1.38128 * 120.06761 * 0.50881 * 15 14 13 17 17 C 1.38855 * 119.92721 * 359.74538 * 16 15 14 18 18 O 1.35757 * 120.06678 * 179.97438 * 17 16 15 19 19 C 1.34827 * 116.99656 * 354.48897 * 18 17 16 20 20 H 1.07992 * 120.00525 * 5.06092 * 19 18 17 21 21 C 1.38663 * 119.99678 * 185.05180 * 19 18 17 22 22 N 1.31560 * 119.99710 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99829 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47302 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46801 * 120.00576 * 23 21 19 26 26 H 1.48498 * 109.47081 * 239.99957 * 23 21 19 27 27 C 1.38080 * 119.96013 * 90.00014 * 13 12 10 28 28 H 1.09003 * 109.46990 * 59.99916 * 1 2 3 29 29 H 1.08990 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46790 * 300.00937 * 1 2 3 31 31 H 1.08998 * 109.47323 * 179.97438 * 6 5 3 32 32 H 1.09007 * 109.46842 * 299.99926 * 6 5 3 33 33 H 1.08999 * 109.47397 * 59.99960 * 6 5 3 34 34 H 1.08996 * 109.47411 * 305.00233 * 7 5 3 35 35 H 1.08992 * 109.47245 * 184.99686 * 7 5 3 36 36 H 0.96697 * 114.00164 * 180.02562 * 8 7 5 37 37 H 0.96992 * 120.00248 * 0.02562 * 9 5 3 38 38 H 1.08997 * 109.47142 * 299.99907 * 12 10 9 39 39 H 1.08999 * 109.46773 * 60.00464 * 12 10 9 40 40 H 1.08006 * 119.92943 * 0.02562 * 14 13 12 41 41 H 1.08004 * 119.96908 * 180.25791 * 15 14 13 42 42 H 1.07998 * 120.03314 * 179.76958 * 16 15 14 43 43 H 0.96994 * 119.99606 * 179.97438 * 22 21 19 44 44 H 1.07993 * 120.03904 * 359.95868 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0817 1.1762 -1.4378 7 6 4.0075 2.6070 0.6090 8 8 3.6272 2.6500 1.9858 9 7 4.1135 0.1704 0.7913 10 6 5.4474 0.0379 0.9316 11 8 6.1948 0.8333 0.4027 12 6 6.0102 -1.0979 1.7467 13 6 7.5152 -1.0191 1.7460 14 6 8.2409 -1.6744 0.7676 15 6 9.6216 -1.6006 0.7608 16 6 10.2810 -0.8804 1.7378 17 6 9.5556 -0.2258 2.7243 18 8 10.2008 0.4823 3.6862 19 6 11.5474 0.4170 3.6948 20 1 12.0675 -0.1123 2.9102 21 6 12.2647 1.0296 4.7112 22 7 11.6312 1.6742 5.6672 23 14 14.1304 0.9385 4.7235 24 1 14.5959 0.1613 3.5470 25 1 14.6934 2.3114 4.6636 26 1 14.5852 0.2711 5.9697 27 6 8.1684 -0.2975 2.7254 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 5.1702 1.2337 -1.4383 32 1 3.7674 0.2271 -1.8721 33 1 3.6747 1.9979 -2.0270 34 1 3.5291 3.4274 0.0742 35 1 5.0902 2.7028 0.5280 36 1 3.8755 3.4684 2.4371 37 1 3.5158 -0.4659 1.2140 38 1 5.6435 -1.0268 2.7707 39 1 5.6955 -2.0471 1.3130 40 1 7.7278 -2.2415 0.0050 41 1 10.1854 -2.1099 -0.0069 42 1 11.3597 -0.8262 1.7341 43 1 12.1329 2.1024 6.3783 44 1 7.6014 0.2108 3.4912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417949491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:06 Heat of formation + Delta-G solvation = -164.151786 kcal Electronic energy + Delta-G solvation = -29191.687690 eV Core-core repulsion = 24882.678476 eV Total energy + Delta-G solvation = -4309.009214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.31899 -39.86264 -38.83683 -37.44149 -36.63933 -36.28699 -35.04602 -32.55205 -32.16219 -31.08025 -29.11966 -28.32913 -27.02251 -26.43595 -25.20208 -24.23817 -21.76369 -21.39880 -20.43655 -19.86773 -18.67068 -17.61477 -17.57414 -17.45146 -16.85108 -16.69678 -16.27249 -15.57652 -15.30719 -14.95429 -14.59953 -14.39550 -14.24585 -14.19019 -13.84172 -13.55263 -13.45574 -13.33493 -12.90287 -12.72464 -12.60123 -12.46005 -12.41964 -12.31242 -11.91263 -11.73532 -11.47204 -11.23801 -11.20360 -10.86640 -10.79120 -10.71831 -10.56571 -10.39562 -10.22658 -9.52160 -9.28185 -9.25567 -8.79353 -8.00999 -7.16198 -6.39631 -3.98406 1.71325 2.14738 2.18910 2.44781 2.73145 3.02373 3.16189 3.16826 3.22430 3.82096 4.00807 4.27360 4.54514 4.59697 4.72077 4.80596 4.88587 5.00138 5.12009 5.14198 5.16516 5.23262 5.25674 5.37597 5.40857 5.54409 5.56472 5.71954 5.81187 5.86712 5.95482 5.98888 6.19351 6.23337 6.39984 6.71387 6.97562 7.12980 7.28624 7.32635 7.40497 7.43190 7.47107 7.49989 7.88561 8.05844 8.26370 9.06419 9.77988 10.78841 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.021004 B = 0.002412 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.783278 B =11605.414150 C =12269.829247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.490 6.490 5 C 0.200 3.800 6 C -0.166 4.166 7 C 0.069 3.931 8 O -0.567 6.567 9 N -0.720 5.720 10 C 0.526 3.474 11 O -0.517 6.517 12 C -0.092 4.092 13 C -0.032 4.032 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.154 3.846 18 O -0.180 6.180 19 C -0.389 4.389 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.276 1.276 27 C -0.173 4.173 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.386 0.614 37 H 0.407 0.593 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.268 0.732 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.707 -4.675 -11.744 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.375 6.375 5 C 0.112 3.888 6 C -0.224 4.224 7 C -0.010 4.010 8 O -0.373 6.373 9 N -0.376 5.376 10 C 0.313 3.687 11 O -0.391 6.391 12 C -0.132 4.132 13 C -0.033 4.033 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.192 4.192 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.233 0.767 37 H 0.243 0.757 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.143 0.857 43 H 0.078 0.922 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.652 -4.095 -11.881 23.327 hybrid contribution 0.562 0.304 0.291 0.702 sum -19.090 -3.791 -11.591 22.653 Atomic orbital electron populations 1.23322 0.75851 1.03965 1.02731 1.86481 1.23810 1.33144 1.83871 1.23511 0.91190 0.81765 0.72242 1.90684 1.66246 1.36298 1.44278 1.20232 0.84799 0.89216 0.94512 1.22241 1.05585 1.03333 0.91238 1.22543 1.01288 0.93995 0.83130 1.86380 1.83791 1.44415 1.22710 1.45886 1.07651 1.29834 1.54269 1.20725 0.80873 0.86591 0.80489 1.90684 1.58164 1.43300 1.46976 1.20578 0.94263 0.97181 1.01173 1.18637 0.91788 0.97602 0.95255 1.20342 0.93894 1.06497 1.00741 1.20672 0.94030 0.97523 0.97117 1.21175 1.00560 1.05015 0.98262 1.19282 0.91720 0.89967 0.88925 1.83979 1.21308 1.58280 1.44850 1.21360 0.78300 1.36022 1.10903 0.89090 1.25276 1.00420 0.96174 0.94732 1.70052 1.36032 1.32251 1.11669 0.85658 0.80864 0.78369 0.78594 1.19134 1.20215 1.20199 1.19951 0.91815 1.05535 1.01913 0.91798 0.87778 0.91658 0.87707 0.90715 0.90850 0.91928 0.89365 0.76650 0.75726 0.88057 0.88222 0.87927 0.87542 0.85679 0.92177 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.26 9.78 -39.26 -0.38 -3.64 16 3 C 0.47 5.30 6.51 36.01 0.23 5.54 16 4 O -0.49 -6.56 15.74 -18.76 -0.30 -6.85 16 5 C 0.20 2.25 0.79 -132.97 -0.11 2.15 16 6 C -0.17 -1.66 8.38 37.16 0.31 -1.34 16 7 C 0.07 0.84 5.28 37.16 0.20 1.04 16 8 O -0.57 -7.05 13.17 -35.23 -0.46 -7.52 16 9 N -0.72 -7.92 4.80 -48.68 -0.23 -8.15 16 10 C 0.53 7.23 7.24 -10.98 -0.08 7.15 16 11 O -0.52 -8.95 12.30 5.55 0.07 -8.88 16 12 C -0.09 -1.20 5.83 -29.03 -0.17 -1.37 16 13 C -0.03 -0.58 4.37 -104.65 -0.46 -1.03 16 14 C -0.20 -3.44 9.70 -39.54 -0.38 -3.83 16 15 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 16 C -0.23 -5.17 9.17 -39.39 -0.36 -5.54 16 17 C 0.15 3.84 6.65 -39.11 -0.26 3.58 16 18 O -0.18 -5.26 9.76 0.04 0.00 -5.26 16 19 C -0.39 -11.09 9.49 30.89 0.29 -10.79 16 20 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 21 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 22 N -0.86 -25.73 13.67 55.48 0.76 -24.98 16 23 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 27 C -0.17 -3.75 9.65 -39.39 -0.38 -4.13 16 28 H 0.06 0.39 8.13 -51.93 -0.42 -0.04 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.10 1.25 6.17 -51.93 -0.32 0.93 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.69 7.68 -51.93 -0.40 0.30 16 35 H 0.09 1.21 6.32 -51.93 -0.33 0.88 16 36 H 0.39 3.42 9.12 45.56 0.42 3.83 16 37 H 0.41 3.64 7.91 -40.82 -0.32 3.32 16 38 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 39 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 40 H 0.10 1.51 8.06 -52.48 -0.42 1.08 16 41 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 42 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -36.17 376.63 -5.37 -41.54 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -4.88 Total: 10.40 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -0.59 Total: -8.16 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.52 Total: -33.13 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -1.07 Total: -32.15 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.17 -5.37 -41.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417949491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.612 kcal (2) G-P(sol) polarization free energy of solvation -36.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds