Wall clock time and date at job start Tue Mar 31 2020 20:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34231 * 117.00456 * 2 1 4 4 O 1.20829 * 119.99465 * 0.02562 * 3 2 1 5 5 C 1.50690 * 120.00379 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.47158 * 205.00224 * 5 3 2 7 7 C 1.52996 * 109.47738 * 84.99841 * 5 3 2 8 8 O 1.42901 * 109.47113 * 300.00230 * 7 5 3 9 9 N 1.46503 * 109.47223 * 324.99501 * 5 3 2 10 10 C 1.34781 * 120.00120 * 179.72212 * 9 5 3 11 11 O 1.21273 * 119.99867 * 0.02562 * 10 9 5 12 12 C 1.50703 * 119.99600 * 180.02562 * 10 9 5 13 13 C 1.50704 * 109.46612 * 180.02562 * 12 10 9 14 14 C 1.38303 * 119.92683 * 269.72487 * 13 12 10 15 15 C 1.38101 * 120.06760 * 179.72617 * 14 13 12 16 16 C 1.38878 * 119.93205 * 0.57089 * 15 14 13 17 17 O 1.35749 * 120.07283 * 179.68373 * 16 15 14 18 18 C 1.34828 * 117.00165 * 174.48467 * 17 16 15 19 19 H 1.08006 * 119.99886 * 5.06308 * 18 17 16 20 20 C 1.38647 * 120.00131 * 185.05363 * 18 17 16 21 21 N 1.31561 * 120.00255 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00105 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47093 * 89.99732 * 22 20 18 24 24 H 1.48504 * 109.47507 * 209.99932 * 22 20 18 25 25 H 1.48498 * 109.47186 * 330.00181 * 22 20 18 26 26 C 1.38886 * 119.85798 * 359.70103 * 16 15 14 27 27 C 1.38091 * 119.93438 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.47338 * 299.99904 * 1 2 3 29 29 H 1.09002 * 109.47077 * 60.00516 * 1 2 3 30 30 H 1.09004 * 109.47268 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47277 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.46723 * 299.99815 * 6 5 3 33 33 H 1.08995 * 109.47257 * 59.99706 * 6 5 3 34 34 H 1.08999 * 109.46851 * 59.99752 * 7 5 3 35 35 H 1.08996 * 109.47767 * 179.97438 * 7 5 3 36 36 H 0.96696 * 114.00126 * 179.97438 * 8 7 5 37 37 H 0.96996 * 119.99801 * 0.02562 * 9 5 3 38 38 H 1.08998 * 109.46998 * 299.99770 * 12 10 9 39 39 H 1.08995 * 109.47346 * 60.00438 * 12 10 9 40 40 H 1.07996 * 119.96638 * 359.97438 * 14 13 12 41 41 H 1.07994 * 120.03506 * 180.27342 * 15 14 13 42 42 H 0.97000 * 120.00106 * 179.97438 * 21 20 18 43 43 H 1.08003 * 120.03632 * 179.97438 * 26 16 15 44 44 H 1.07997 * 119.97301 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0074 2.6070 0.6092 7 6 4.0817 1.1762 -1.4377 8 8 3.6697 -0.0680 -2.0072 9 7 4.1135 0.1704 0.7913 10 6 5.4475 0.0350 0.9274 11 8 6.1949 0.8277 0.3947 12 6 6.0103 -1.1015 1.7416 13 6 7.5155 -1.0261 1.7359 14 6 8.2356 -1.6840 0.7555 15 6 9.6147 -1.6123 0.7442 16 6 10.2789 -0.8883 1.7257 17 8 11.6348 -0.8212 1.7212 18 6 12.2106 -0.0105 2.6317 19 1 11.6029 0.4853 3.3742 20 6 13.5829 0.1865 2.6150 21 7 14.1449 0.9771 3.5037 22 14 14.6340 -0.6707 1.3305 23 1 14.7455 0.1914 0.1266 24 1 15.9879 -0.9224 1.8863 25 1 14.0041 -1.9627 0.9574 26 6 9.5531 -0.2335 2.7123 27 6 8.1740 -0.3043 2.7148 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 5.0959 2.6642 0.6084 32 1 3.6003 3.4287 0.0201 33 1 3.6403 2.6772 1.6331 34 1 3.6746 1.9979 -2.0269 35 1 5.1701 1.2337 -1.4382 36 1 3.9617 -0.1987 -2.9197 37 1 3.5158 -0.4659 1.2140 38 1 5.6471 -1.0288 2.7667 39 1 5.6921 -2.0503 1.3097 40 1 7.7187 -2.2512 -0.0045 41 1 10.1763 -2.1226 -0.0242 42 1 15.1050 1.1147 3.4922 43 1 10.0668 0.3300 3.4772 44 1 7.6090 0.2043 3.4818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001451218201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:08 Heat of formation + Delta-G solvation = -162.229560 kcal Electronic energy + Delta-G solvation = -29049.395357 eV Core-core repulsion = 24740.469497 eV Total energy + Delta-G solvation = -4308.925860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.35889 -39.92091 -39.01365 -37.45399 -36.86551 -36.54850 -35.06421 -32.58198 -32.11811 -30.74137 -30.19589 -28.41410 -26.86522 -26.49411 -24.96678 -24.20623 -22.07515 -21.42671 -20.31139 -19.88495 -18.64395 -17.85850 -17.81700 -17.36256 -17.19517 -16.96109 -16.29568 -15.63093 -15.44710 -14.82563 -14.79514 -14.38919 -14.15386 -13.97086 -13.76758 -13.67624 -13.57564 -13.43763 -13.06050 -12.67773 -12.59271 -12.56289 -12.50410 -12.30768 -12.16328 -11.98781 -11.59560 -11.27173 -11.19040 -10.94314 -10.88355 -10.73734 -10.64585 -10.44684 -10.13187 -9.56806 -9.35544 -9.32109 -8.83300 -8.20293 -7.27700 -6.38909 -4.05261 1.64776 2.16899 2.19230 2.20588 2.66150 2.97283 3.24042 3.28051 3.42338 3.67846 4.23315 4.26147 4.46632 4.51748 4.70808 4.79203 4.81043 4.88860 4.93743 5.03655 5.12658 5.13938 5.25071 5.26120 5.38889 5.42817 5.49960 5.64216 5.69254 5.79106 5.85835 5.98163 6.14292 6.16616 6.36452 6.60028 6.82855 7.05339 7.20628 7.25544 7.30945 7.34033 7.36522 7.65115 7.83493 8.07008 8.20743 8.96533 9.59418 10.68796 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.026058 B = 0.002215 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.261263 B =12638.968727 C =12747.847387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.343 6.343 3 C 0.472 3.528 4 O -0.499 6.499 5 C 0.199 3.801 6 C -0.158 4.158 7 C 0.062 3.938 8 O -0.563 6.563 9 N -0.722 5.722 10 C 0.520 3.480 11 O -0.518 6.518 12 C -0.080 4.080 13 C -0.161 4.161 14 C -0.061 4.061 15 C -0.191 4.191 16 C 0.162 3.838 17 O -0.218 6.218 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.880 5.880 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.219 4.219 27 C -0.057 4.057 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.383 0.617 37 H 0.407 0.593 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.279 0.721 43 H 0.132 0.868 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.297 -3.410 -7.380 27.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.258 6.258 3 C 0.314 3.686 4 O -0.385 6.385 5 C 0.111 3.889 6 C -0.216 4.216 7 C -0.017 4.017 8 O -0.368 6.368 9 N -0.379 5.379 10 C 0.308 3.692 11 O -0.392 6.392 12 C -0.120 4.120 13 C -0.162 4.162 14 C -0.079 4.079 15 C -0.211 4.211 16 C 0.110 3.890 17 O -0.123 6.123 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.141 4.141 21 N -0.518 5.518 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.239 4.239 27 C -0.076 4.076 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.230 0.770 37 H 0.242 0.758 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.150 0.850 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -25.865 -2.615 -7.224 26.982 hybrid contribution 0.142 -0.258 -0.750 0.806 sum -25.723 -2.874 -7.974 27.084 Atomic orbital electron populations 1.23317 0.76181 1.03941 1.02515 1.86543 1.23362 1.32702 1.83222 1.23499 0.91197 0.81779 0.72135 1.90695 1.66369 1.36412 1.45044 1.20266 0.84917 0.90746 0.92946 1.22156 1.05073 0.92920 1.01419 1.22630 1.01709 0.86701 0.90696 1.86482 1.79787 1.37726 1.32819 1.45974 1.07788 1.30085 1.54013 1.21005 0.80752 0.86706 0.80731 1.90673 1.58175 1.43460 1.46925 1.20419 0.94377 0.96819 1.00367 1.18682 0.91995 1.05771 0.99766 1.20402 0.92838 0.98011 0.96639 1.20147 0.93738 1.06493 1.00697 1.19127 0.83572 0.93268 0.93032 1.83569 1.15167 1.59497 1.54099 1.20769 0.92328 1.23789 1.09480 0.87625 1.24468 0.96004 0.96071 0.97526 1.69650 1.12196 1.35504 1.34494 0.86178 0.78799 0.80962 0.80938 1.19906 1.20831 1.18374 1.21221 0.93957 1.06424 1.02249 1.20563 0.93774 0.96286 0.96956 0.91856 0.91862 0.87826 0.88085 0.90292 0.91154 0.92530 0.88861 0.76987 0.75772 0.88752 0.88595 0.87180 0.86609 0.91097 0.85006 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.34 -3.15 9.67 -39.37 -0.38 -3.53 16 3 C 0.47 5.03 6.41 36.00 0.23 5.26 16 4 O -0.50 -6.25 15.84 -18.75 -0.30 -6.54 16 5 C 0.20 2.08 0.80 -132.97 -0.11 1.98 16 6 C -0.16 -1.67 7.94 37.16 0.29 -1.37 16 7 C 0.06 0.62 5.72 37.16 0.21 0.83 16 8 O -0.56 -5.29 13.06 -35.23 -0.46 -5.75 16 9 N -0.72 -7.18 4.90 -48.68 -0.24 -7.41 16 10 C 0.52 6.48 7.24 -10.98 -0.08 6.40 16 11 O -0.52 -8.33 12.24 5.56 0.07 -8.26 16 12 C -0.08 -0.92 5.83 -29.03 -0.17 -1.09 16 13 C -0.16 -2.60 4.38 -104.57 -0.46 -3.06 16 14 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 15 C -0.19 -3.84 9.99 -39.39 -0.39 -4.24 16 16 C 0.16 3.80 6.65 -39.10 -0.26 3.54 16 17 O -0.22 -5.83 8.59 0.06 0.00 -5.83 16 18 C -0.39 -11.05 9.95 30.88 0.31 -10.75 16 19 H 0.11 3.07 5.44 -52.48 -0.29 2.79 16 20 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 21 N -0.88 -25.64 13.96 55.48 0.77 -24.86 16 22 Si 0.91 21.89 28.62 -169.99 -4.86 17.02 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.22 -4.79 9.17 -39.40 -0.36 -5.15 16 27 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 1.24 6.19 -51.93 -0.32 0.91 16 32 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 1.10 6.15 -51.93 -0.32 0.78 16 36 H 0.38 2.08 9.12 45.56 0.42 2.50 16 37 H 0.41 3.21 7.91 -40.82 -0.32 2.89 16 38 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 42 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.13 3.03 5.64 -52.48 -0.30 2.73 16 44 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -34.60 375.37 -5.21 -39.81 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -4.89 Total: 7.24 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.58 Total: -7.53 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.54 Total: -32.28 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.07 Total: -29.92 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.86 Total: 17.02 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.60 -5.21 -39.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451218201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.420 kcal (2) G-P(sol) polarization free energy of solvation -34.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds