Wall clock time and date at job start Tue Mar 31 2020 20:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34231 * 117.00456 * 2 1 4 4 O 1.20829 * 119.99465 * 0.02562 * 3 2 1 5 5 C 1.50690 * 120.00379 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.47158 * 205.00224 * 5 3 2 7 7 C 1.52996 * 109.47738 * 84.99841 * 5 3 2 8 8 O 1.42901 * 109.47113 * 300.00230 * 7 5 3 9 9 N 1.46503 * 109.47223 * 324.99501 * 5 3 2 10 10 C 1.34781 * 120.00120 * 179.72212 * 9 5 3 11 11 O 1.21273 * 119.99867 * 0.02562 * 10 9 5 12 12 C 1.50703 * 119.99600 * 180.02562 * 10 9 5 13 13 C 1.50704 * 109.46612 * 180.02562 * 12 10 9 14 14 C 1.38303 * 119.92683 * 269.72487 * 13 12 10 15 15 C 1.38101 * 120.06760 * 179.72617 * 14 13 12 16 16 C 1.38878 * 119.93205 * 0.57089 * 15 14 13 17 17 O 1.35749 * 120.07283 * 179.68373 * 16 15 14 18 18 C 1.34828 * 117.00165 * 174.48467 * 17 16 15 19 19 H 1.08006 * 119.99886 * 5.06308 * 18 17 16 20 20 C 1.38647 * 120.00131 * 185.05363 * 18 17 16 21 21 N 1.31561 * 120.00255 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00105 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47093 * 89.99732 * 22 20 18 24 24 H 1.48504 * 109.47507 * 209.99932 * 22 20 18 25 25 H 1.48498 * 109.47186 * 330.00181 * 22 20 18 26 26 C 1.38886 * 119.85798 * 359.70103 * 16 15 14 27 27 C 1.38091 * 119.93438 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.47338 * 299.99904 * 1 2 3 29 29 H 1.09002 * 109.47077 * 60.00516 * 1 2 3 30 30 H 1.09004 * 109.47268 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47277 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.46723 * 299.99815 * 6 5 3 33 33 H 1.08995 * 109.47257 * 59.99706 * 6 5 3 34 34 H 1.08999 * 109.46851 * 59.99752 * 7 5 3 35 35 H 1.08996 * 109.47767 * 179.97438 * 7 5 3 36 36 H 0.96696 * 114.00126 * 179.97438 * 8 7 5 37 37 H 0.96996 * 119.99801 * 0.02562 * 9 5 3 38 38 H 1.08998 * 109.46998 * 299.99770 * 12 10 9 39 39 H 1.08995 * 109.47346 * 60.00438 * 12 10 9 40 40 H 1.07996 * 119.96638 * 359.97438 * 14 13 12 41 41 H 1.07994 * 120.03506 * 180.27342 * 15 14 13 42 42 H 0.97000 * 120.00106 * 179.97438 * 21 20 18 43 43 H 1.08003 * 120.03632 * 179.97438 * 26 16 15 44 44 H 1.07997 * 119.97301 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0074 2.6070 0.6092 7 6 4.0817 1.1762 -1.4377 8 8 3.6697 -0.0680 -2.0072 9 7 4.1135 0.1704 0.7913 10 6 5.4475 0.0350 0.9274 11 8 6.1949 0.8277 0.3947 12 6 6.0103 -1.1015 1.7416 13 6 7.5155 -1.0261 1.7359 14 6 8.2356 -1.6840 0.7555 15 6 9.6147 -1.6123 0.7442 16 6 10.2789 -0.8883 1.7257 17 8 11.6348 -0.8212 1.7212 18 6 12.2106 -0.0105 2.6317 19 1 11.6029 0.4853 3.3742 20 6 13.5829 0.1865 2.6150 21 7 14.1449 0.9771 3.5037 22 14 14.6340 -0.6707 1.3305 23 1 14.7455 0.1914 0.1266 24 1 15.9879 -0.9224 1.8863 25 1 14.0041 -1.9627 0.9574 26 6 9.5531 -0.2335 2.7123 27 6 8.1740 -0.3043 2.7148 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 5.0959 2.6642 0.6084 32 1 3.6003 3.4287 0.0201 33 1 3.6403 2.6772 1.6331 34 1 3.6746 1.9979 -2.0269 35 1 5.1701 1.2337 -1.4382 36 1 3.9617 -0.1987 -2.9197 37 1 3.5158 -0.4659 1.2140 38 1 5.6471 -1.0288 2.7667 39 1 5.6921 -2.0503 1.3097 40 1 7.7187 -2.2512 -0.0045 41 1 10.1763 -2.1226 -0.0242 42 1 15.1050 1.1147 3.4922 43 1 10.0668 0.3300 3.4772 44 1 7.6090 0.2043 3.4818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001451218201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:08 Heat of formation + Delta-G solvation = -188.631364 kcal Electronic energy + Delta-G solvation = -29050.540225 eV Core-core repulsion = 24740.469497 eV Total energy + Delta-G solvation = -4310.070728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17846 -41.06380 -40.49425 -38.57327 -37.90330 -37.57769 -35.94489 -34.50352 -33.37938 -31.91737 -31.72654 -28.99168 -28.32093 -27.31103 -26.72780 -25.04443 -23.67018 -22.67135 -21.45523 -20.80010 -19.81009 -19.47930 -19.04261 -18.57384 -18.09740 -17.74340 -17.13313 -16.76938 -16.51209 -16.33180 -15.93806 -15.70541 -15.58996 -15.37021 -15.14292 -14.85390 -14.56258 -14.35752 -14.27821 -14.16781 -14.04744 -13.82480 -13.36704 -13.27163 -13.11368 -13.00686 -12.81113 -12.65556 -12.44981 -12.38309 -12.27944 -11.91183 -11.83717 -11.72912 -11.25458 -11.23754 -10.89559 -10.53228 -10.21108 -9.74422 -8.94610 -8.48901 -6.21140 0.63092 0.63881 0.86579 1.31221 1.35861 1.49213 1.52283 1.71790 2.07110 2.28936 2.80030 2.96615 3.08540 3.21053 3.51254 3.73770 3.86969 4.04188 4.08311 4.16767 4.20803 4.28841 4.33328 4.35649 4.51587 4.55330 4.58843 4.62769 4.65804 4.73362 4.75788 4.86204 5.02580 5.06013 5.22489 5.28738 5.30525 5.40743 5.60534 5.78216 5.83430 5.94011 6.28142 6.47992 6.56504 6.74781 6.85578 7.30059 7.61123 8.62876 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.026058 B = 0.002215 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.261263 B =12638.968727 C =12747.847387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.344 6.344 3 C 0.478 3.522 4 O -0.522 6.522 5 C 0.195 3.805 6 C -0.154 4.154 7 C 0.066 3.934 8 O -0.570 6.570 9 N -0.706 5.706 10 C 0.523 3.477 11 O -0.560 6.560 12 C -0.079 4.079 13 C -0.134 4.134 14 C -0.056 4.056 15 C -0.194 4.194 16 C 0.117 3.883 17 O -0.247 6.247 18 C -0.398 4.398 19 H 0.079 0.921 20 C 0.007 3.993 21 N -0.925 5.925 22 Si 0.972 3.028 23 H -0.268 1.268 24 H -0.266 1.266 25 H -0.262 1.262 26 C -0.239 4.239 27 C -0.063 4.063 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.133 0.867 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.399 0.601 37 H 0.420 0.580 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.153 0.847 41 H 0.126 0.874 42 H 0.284 0.716 43 H 0.105 0.895 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.651 -5.553 -8.838 31.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.259 6.259 3 C 0.321 3.679 4 O -0.410 6.410 5 C 0.107 3.893 6 C -0.212 4.212 7 C -0.013 4.013 8 O -0.378 6.378 9 N -0.362 5.362 10 C 0.311 3.689 11 O -0.437 6.437 12 C -0.118 4.118 13 C -0.135 4.135 14 C -0.074 4.074 15 C -0.213 4.213 16 C 0.069 3.931 17 O -0.155 6.155 18 C -0.474 4.474 19 H 0.097 0.903 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.794 3.206 23 H -0.193 1.193 24 H -0.191 1.191 25 H -0.186 1.186 26 C -0.258 4.258 27 C -0.081 4.081 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.152 0.848 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.250 0.750 37 H 0.258 0.742 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.170 0.830 41 H 0.144 0.856 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -29.301 -4.800 -8.687 30.936 hybrid contribution 0.716 0.352 -0.333 0.865 sum -28.584 -4.448 -9.020 30.302 Atomic orbital electron populations 1.23616 0.74438 1.05967 1.02576 1.86524 1.25033 1.31662 1.82674 1.23404 0.91043 0.81917 0.71573 1.90691 1.66802 1.37248 1.46278 1.20266 0.85146 0.90598 0.93297 1.22080 1.03798 0.93515 1.01803 1.22487 1.00561 0.87471 0.90744 1.86431 1.79863 1.37217 1.34318 1.45761 1.07205 1.29953 1.53293 1.21060 0.81171 0.86342 0.80277 1.90697 1.59257 1.45017 1.48776 1.20540 0.90402 0.98170 1.02672 1.19245 0.95006 1.02011 0.97245 1.20928 0.91581 0.97545 0.97368 1.20496 0.95321 1.05571 0.99872 1.19694 0.82821 0.95529 0.95081 1.83507 1.16984 1.60607 1.54398 1.20701 0.92715 1.24306 1.09698 0.90314 1.25302 0.97096 0.96962 0.99714 1.69736 1.12799 1.37528 1.36501 0.85198 0.77467 0.79539 0.78372 1.19265 1.19066 1.18622 1.21240 0.95851 1.06870 1.01814 1.20899 0.92231 0.96524 0.98403 0.91558 0.92128 0.84849 0.89868 0.89916 0.90831 0.91597 0.90627 0.75049 0.74236 0.85521 0.84853 0.82952 0.85553 0.90619 0.87753 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.34 -5.21 9.67 -51.32 -0.50 -5.71 16 3 C 0.48 9.03 6.41 71.23 0.46 9.48 16 4 O -0.52 -12.15 15.84 21.96 0.35 -11.81 16 5 C 0.20 3.64 0.80 2.86 0.00 3.64 16 6 C -0.15 -3.07 7.94 71.98 0.57 -2.50 16 7 C 0.07 1.21 5.72 71.98 0.41 1.62 16 8 O -0.57 -9.05 13.06 -148.98 -1.95 -10.99 16 9 N -0.71 -11.54 4.90 -426.33 -2.09 -13.63 16 10 C 0.52 11.14 7.24 87.66 0.63 11.77 16 11 O -0.56 -16.86 12.24 -3.01 -0.04 -16.89 16 12 C -0.08 -1.38 5.83 29.10 0.17 -1.21 16 13 C -0.13 -3.86 4.38 -19.83 -0.09 -3.95 16 14 C -0.06 -1.72 9.69 22.25 0.22 -1.51 16 15 C -0.19 -7.58 9.99 22.39 0.22 -7.35 16 16 C 0.12 5.68 6.65 22.58 0.15 5.83 16 17 O -0.25 -13.85 8.59 -22.72 -0.20 -14.05 16 18 C -0.40 -24.13 9.95 67.92 0.68 -23.46 16 19 H 0.08 5.02 5.44 -2.91 -0.02 5.00 16 20 C 0.01 0.43 5.49 84.83 0.47 0.89 16 21 N -0.92 -56.41 13.96 21.61 0.30 -56.11 16 22 Si 0.97 46.51 28.62 68.60 1.96 48.47 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 26 C -0.24 -10.83 9.17 22.39 0.21 -10.63 16 27 C -0.06 -2.18 9.69 22.25 0.22 -1.97 16 28 H 0.07 0.60 8.13 -2.39 -0.02 0.58 16 29 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 30 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.08 2.00 6.19 -2.39 -0.01 1.98 16 32 H 0.08 1.55 7.87 -2.39 -0.02 1.53 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.69 6.15 -2.39 -0.01 1.67 16 36 H 0.40 3.24 9.12 -74.06 -0.68 2.56 16 37 H 0.42 4.76 7.91 -92.71 -0.73 4.02 16 38 H 0.13 1.56 8.08 -2.39 -0.02 1.54 16 39 H 0.13 1.51 8.08 -2.39 -0.02 1.49 16 40 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 42 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 43 H 0.10 5.24 5.64 -2.91 -0.02 5.22 16 44 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -80.21 375.37 3.01 -77.20 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.35 Total: 21.40 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 5.51 Total: -17.89 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -1.79 Total: -69.73 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -2.33 Total: -59.45 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.96 Total: 48.47 kcal Total: -80.21 3.01 -77.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451218201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.431 kcal (2) G-P(sol) polarization free energy of solvation -80.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds