Wall clock time and date at job start Tue Mar 31 2020 20:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.00010 * 2 1 4 4 C 1.54329 * 109.99360 * 238.96113 * 2 1 3 5 5 H 1.09003 * 110.51534 * 336.97531 * 4 2 1 6 6 N 1.46501 * 111.00135 * 100.12636 * 4 2 1 7 7 C 1.34781 * 119.99883 * 200.23170 * 6 4 2 8 8 O 1.21277 * 119.99946 * 0.02562 * 7 6 4 9 9 C 1.50697 * 120.00028 * 179.97438 * 7 6 4 10 10 N 1.46496 * 109.47301 * 180.02562 * 9 7 6 11 11 C 1.34775 * 119.99766 * 179.97438 * 10 9 7 12 12 O 1.21700 * 120.00677 * 0.02562 * 11 10 9 13 13 C 1.46588 * 119.99955 * 179.97438 * 11 10 9 14 14 C 1.36643 * 125.46147 * 179.72003 * 13 11 10 15 15 C 1.37468 * 113.29875 * 179.83903 * 14 13 11 16 16 C 1.33818 * 115.10015 * 0.45574 * 15 14 13 17 17 S 1.70612 * 110.95465 * 359.75043 * 16 15 14 18 18 C 1.55157 * 103.02181 * 218.66795 * 4 2 1 19 19 C 1.54909 * 101.58341 * 35.30792 * 18 4 2 20 20 N 1.47020 * 109.88142 * 121.09568 * 2 1 3 21 21 C 1.36938 * 125.64856 * 298.39591 * 20 2 1 22 22 H 1.07999 * 120.00095 * 347.63693 * 21 20 2 23 23 C 1.38821 * 120.00123 * 167.63615 * 21 20 2 24 24 N 1.31608 * 119.99899 * 325.95415 * 23 21 20 25 25 Si 1.86801 * 119.99764 * 145.95513 * 23 21 20 26 26 H 1.48498 * 109.47090 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47097 * 120.00341 * 25 23 21 28 28 H 1.48509 * 109.46660 * 239.99976 * 25 23 21 29 29 H 1.08994 * 109.47385 * 300.35558 * 1 2 3 30 30 H 1.08997 * 109.46929 * 60.36048 * 1 2 3 31 31 H 1.09003 * 109.46995 * 180.35709 * 1 2 3 32 32 H 0.96999 * 119.99893 * 20.23829 * 6 4 2 33 33 H 1.08999 * 109.47288 * 300.00622 * 9 7 6 34 34 H 1.09009 * 109.46860 * 60.00310 * 9 7 6 35 35 H 0.97000 * 120.00325 * 0.02562 * 10 9 7 36 36 H 1.08006 * 123.35325 * 0.02688 * 14 13 11 37 37 H 1.08007 * 122.45301 * 180.22546 * 15 14 13 38 38 H 1.08005 * 124.52074 * 179.76004 * 16 15 14 39 39 H 1.09003 * 111.00544 * 277.23228 * 18 4 2 40 40 H 1.09006 * 111.03695 * 153.39869 * 18 4 2 41 41 H 1.09003 * 110.36245 * 204.15534 * 19 18 4 42 42 H 1.08998 * 110.46148 * 81.87551 * 19 18 4 43 43 H 0.97000 * 120.00210 * 354.25375 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7478 -1.2426 5 1 1.3053 -1.4407 -1.6196 6 7 2.4632 0.1938 -2.2892 7 6 2.5610 -0.2210 -3.5678 8 8 2.3129 -1.3736 -3.8520 9 6 2.9776 0.7477 -4.6444 10 7 3.0073 0.0583 -5.9367 11 6 3.3543 0.7314 -7.0516 12 8 3.6434 1.9117 -6.9848 13 6 3.3847 0.0415 -8.3446 14 6 3.7135 0.6139 -9.5410 15 6 3.6634 -0.2654 -10.5965 16 6 3.2970 -1.5127 -10.2793 17 16 2.9963 -1.6534 -8.6058 18 6 3.2864 -1.5184 -0.6913 19 6 2.8099 -1.8826 0.7369 20 7 2.0300 -0.7141 1.1839 21 6 1.8037 -0.3564 2.4863 22 1 1.3896 0.6143 2.7155 23 6 2.1067 -1.2416 3.5118 24 7 1.9605 -2.5365 3.3281 25 14 2.7219 -0.5946 5.1527 26 1 2.7989 0.8876 5.1029 27 1 1.7859 -1.0063 6.2295 28 1 4.0707 -1.1508 5.4298 29 1 -0.3634 0.5193 0.8867 30 1 -0.3633 0.5082 -0.8932 31 1 -0.3633 -1.0277 0.0064 32 1 2.6613 1.1157 -2.0618 33 1 2.2644 1.5708 -4.6884 34 1 3.9697 1.1383 -4.4176 35 1 2.7766 -0.8823 -5.9901 36 1 3.9884 1.6531 -9.6465 37 1 3.8988 0.0298 -11.6084 38 1 3.2042 -2.3224 -10.9881 39 1 4.1670 -0.8769 -0.6577 40 1 3.4814 -2.4156 -1.2789 41 1 3.6656 -2.0412 1.3933 42 1 2.1806 -2.7722 0.7134 43 1 1.5631 -2.8682 2.5077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479726372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:23 Heat of formation + Delta-G solvation = -13.185547 kcal Electronic energy + Delta-G solvation = -25932.667410 eV Core-core repulsion = 22105.250206 eV Total energy + Delta-G solvation = -3827.417204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -40.47309 -39.59346 -38.02558 -37.67539 -34.79917 -34.31490 -32.28600 -30.72059 -30.58741 -29.01050 -27.75865 -25.32692 -24.49065 -23.83639 -21.80016 -20.97271 -20.39822 -20.09157 -19.59440 -19.08208 -17.36516 -16.92925 -16.77943 -16.15530 -16.05405 -15.88217 -15.21410 -14.91876 -14.35643 -14.21744 -13.96789 -13.55334 -13.46058 -13.33255 -13.17629 -13.00779 -12.98297 -12.70278 -12.68738 -11.96853 -11.84213 -11.39617 -11.36871 -10.92449 -10.79139 -10.59497 -10.49534 -10.37261 -10.12619 -10.07131 -10.00194 -9.65836 -9.62145 -9.26945 -9.01917 -8.92820 -8.38405 -7.04101 -6.18693 -3.12823 0.09224 1.05462 1.46852 1.98402 2.42952 2.50921 2.85092 3.24248 3.51012 3.53430 3.67232 4.36633 4.50312 4.57253 4.61347 4.87389 5.00749 5.04378 5.04909 5.06920 5.21179 5.28361 5.39191 5.51976 5.61307 5.73843 5.85263 5.89010 5.91980 5.98692 6.06971 6.16408 6.26834 6.41544 6.44216 6.74423 6.89757 6.94791 7.00891 7.06699 7.40742 7.74765 7.76494 8.05416 8.44303 8.95940 9.77366 10.31354 11.15868 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.032295 B = 0.001944 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.805239 B =14396.750746 C =14714.174266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.039 0.961 4 C 0.136 3.864 5 H 0.094 0.906 6 N -0.708 5.708 7 C 0.508 3.492 8 O -0.540 6.540 9 C 0.100 3.900 10 N -0.714 5.714 11 C 0.594 3.406 12 O -0.530 6.530 13 C -0.270 4.270 14 C -0.054 4.054 15 C -0.152 4.152 16 C -0.230 4.230 17 S 0.214 5.786 18 C -0.144 4.144 19 C 0.145 3.855 20 N -0.593 5.593 21 C -0.341 4.341 22 H 0.068 0.932 23 C -0.022 4.022 24 N -0.907 5.907 25 Si 1.061 2.939 26 H -0.292 1.292 27 H -0.296 1.296 28 H -0.290 1.290 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.403 0.597 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.410 0.590 36 H 0.155 0.845 37 H 0.146 0.854 38 H 0.170 0.830 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.710 4.123 -26.249 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.048 3.952 3 H 0.057 0.943 4 C 0.031 3.969 5 H 0.112 0.888 6 N -0.358 5.358 7 C 0.293 3.707 8 O -0.417 6.417 9 C -0.027 4.027 10 N -0.369 5.369 11 C 0.381 3.619 12 O -0.409 6.409 13 C -0.390 4.390 14 C -0.087 4.087 15 C -0.183 4.183 16 C -0.368 4.368 17 S 0.481 5.519 18 C -0.183 4.183 19 C 0.019 3.981 20 N -0.319 5.319 21 C -0.468 4.468 22 H 0.086 0.914 23 C -0.224 4.224 24 N -0.547 5.547 25 Si 0.891 3.109 26 H -0.218 1.218 27 H -0.223 1.223 28 H -0.217 1.217 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.238 0.762 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.249 0.751 36 H 0.172 0.828 37 H 0.164 0.836 38 H 0.187 0.813 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.823 2.502 -23.813 24.110 hybrid contribution -0.267 1.541 -2.433 2.892 sum 2.556 4.042 -26.246 26.678 Atomic orbital electron populations 1.22216 0.97623 1.01377 1.00144 1.21035 0.92625 0.95121 0.86441 0.94318 1.22169 0.97237 0.90927 0.86561 0.88757 1.45942 1.68553 1.14581 1.06723 1.20371 0.77700 0.88817 0.83803 1.90699 1.50091 1.18982 1.81959 1.21117 1.04449 0.94932 0.82192 1.45544 1.70118 1.15071 1.06135 1.16876 0.76860 0.86025 0.82179 1.90844 1.49002 1.14898 1.86107 1.24568 1.17586 0.98931 0.97964 1.20815 0.96623 1.01493 0.89789 1.20065 1.04828 0.92470 1.00955 1.25413 1.07668 1.02367 1.01391 1.83334 1.61935 1.05694 1.00933 1.23195 0.97172 0.99812 0.98140 1.21510 0.95036 0.90522 0.91056 1.44647 1.57718 1.28858 1.00698 1.19666 1.45854 1.00418 0.80848 0.91429 1.25650 1.00583 0.94149 1.02026 1.70725 1.42426 1.13892 1.27670 0.83621 0.77068 0.74625 0.75622 1.21818 1.22299 1.21675 0.92388 0.94335 0.93109 0.76227 0.87910 0.87877 0.75142 0.82780 0.83605 0.81255 0.91426 0.91405 0.92608 0.95599 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.14 37.16 0.34 -2.49 16 2 C 0.16 2.97 3.49 -66.95 -0.23 2.73 16 3 H 0.04 0.72 7.70 -51.93 -0.40 0.32 16 4 C 0.14 2.24 2.76 -66.09 -0.18 2.06 16 5 H 0.09 1.69 7.39 -51.93 -0.38 1.30 16 6 N -0.71 -8.97 5.21 -52.03 -0.27 -9.24 16 7 C 0.51 6.43 7.90 -10.99 -0.09 6.34 16 8 O -0.54 -8.53 15.39 5.56 0.09 -8.44 16 9 C 0.10 1.02 6.15 -5.20 -0.03 0.98 16 10 N -0.71 -7.77 5.52 -62.83 -0.35 -8.12 16 11 C 0.59 6.98 7.78 -12.89 -0.10 6.88 16 12 O -0.53 -7.59 16.84 5.19 0.09 -7.51 16 13 C -0.27 -2.64 6.45 -36.79 -0.24 -2.88 16 14 C -0.05 -0.45 10.01 -40.44 -0.40 -0.86 16 15 C -0.15 -1.00 10.15 -41.41 -0.42 -1.42 16 16 C -0.23 -1.42 10.92 29.18 0.32 -1.10 16 17 S 0.21 1.61 22.16 -107.50 -2.38 -0.78 16 18 C -0.14 -2.57 6.77 -24.58 -0.17 -2.74 16 19 C 0.14 3.27 5.34 -2.53 -0.01 3.25 16 20 N -0.59 -14.18 3.06 -162.57 -0.50 -14.68 16 21 C -0.34 -9.21 9.56 -15.06 -0.14 -9.36 16 22 H 0.07 1.84 8.02 -52.49 -0.42 1.41 16 23 C -0.02 -0.60 4.95 -17.43 -0.09 -0.69 16 24 N -0.91 -26.83 12.88 55.49 0.71 -26.12 16 25 Si 1.06 24.94 30.03 -169.99 -5.10 19.84 16 26 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 29 H 0.06 1.14 8.02 -51.93 -0.42 0.72 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.40 4.10 8.33 -40.82 -0.34 3.76 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.94 8.14 -51.92 -0.42 0.51 16 35 H 0.41 4.41 6.55 -40.82 -0.27 4.14 16 36 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.17 0.63 8.06 -52.48 -0.42 0.20 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 1.38 7.83 -51.93 -0.41 0.98 16 42 H 0.03 0.63 7.02 -51.93 -0.36 0.27 16 43 H 0.27 8.01 6.45 -40.82 -0.26 7.75 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -33.29 374.13 -9.39 -42.68 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.86 Total: 6.00 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -1.45 Total: 0.72 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.40 Total: -58.16 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.17 Total: -15.95 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.10 Total: 19.84 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.38 Total: -0.78 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.29 -9.39 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479726372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.497 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds