Wall clock time and date at job start Tue Mar 31 2020 20:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.00010 * 2 1 4 4 C 1.54329 * 109.99360 * 238.96113 * 2 1 3 5 5 H 1.09003 * 110.51534 * 336.97531 * 4 2 1 6 6 N 1.46501 * 111.00135 * 100.12636 * 4 2 1 7 7 C 1.34781 * 119.99883 * 200.23170 * 6 4 2 8 8 O 1.21277 * 119.99946 * 0.02562 * 7 6 4 9 9 C 1.50697 * 120.00028 * 179.97438 * 7 6 4 10 10 N 1.46496 * 109.47301 * 180.02562 * 9 7 6 11 11 C 1.34775 * 119.99766 * 179.97438 * 10 9 7 12 12 O 1.21700 * 120.00677 * 0.02562 * 11 10 9 13 13 C 1.46588 * 119.99955 * 179.97438 * 11 10 9 14 14 C 1.36643 * 125.46147 * 179.72003 * 13 11 10 15 15 C 1.37468 * 113.29875 * 179.83903 * 14 13 11 16 16 C 1.33818 * 115.10015 * 0.45574 * 15 14 13 17 17 S 1.70612 * 110.95465 * 359.75043 * 16 15 14 18 18 C 1.55157 * 103.02181 * 218.66795 * 4 2 1 19 19 C 1.54909 * 101.58341 * 35.30792 * 18 4 2 20 20 N 1.47020 * 109.88142 * 121.09568 * 2 1 3 21 21 C 1.36938 * 125.64856 * 298.39591 * 20 2 1 22 22 H 1.07999 * 120.00095 * 347.63693 * 21 20 2 23 23 C 1.38821 * 120.00123 * 167.63615 * 21 20 2 24 24 N 1.31608 * 119.99899 * 325.95415 * 23 21 20 25 25 Si 1.86801 * 119.99764 * 145.95513 * 23 21 20 26 26 H 1.48498 * 109.47090 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47097 * 120.00341 * 25 23 21 28 28 H 1.48509 * 109.46660 * 239.99976 * 25 23 21 29 29 H 1.08994 * 109.47385 * 300.35558 * 1 2 3 30 30 H 1.08997 * 109.46929 * 60.36048 * 1 2 3 31 31 H 1.09003 * 109.46995 * 180.35709 * 1 2 3 32 32 H 0.96999 * 119.99893 * 20.23829 * 6 4 2 33 33 H 1.08999 * 109.47288 * 300.00622 * 9 7 6 34 34 H 1.09009 * 109.46860 * 60.00310 * 9 7 6 35 35 H 0.97000 * 120.00325 * 0.02562 * 10 9 7 36 36 H 1.08006 * 123.35325 * 0.02688 * 14 13 11 37 37 H 1.08007 * 122.45301 * 180.22546 * 15 14 13 38 38 H 1.08005 * 124.52074 * 179.76004 * 16 15 14 39 39 H 1.09003 * 111.00544 * 277.23228 * 18 4 2 40 40 H 1.09006 * 111.03695 * 153.39869 * 18 4 2 41 41 H 1.09003 * 110.36245 * 204.15534 * 19 18 4 42 42 H 1.08998 * 110.46148 * 81.87551 * 19 18 4 43 43 H 0.97000 * 120.00210 * 354.25375 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7478 -1.2426 5 1 1.3053 -1.4407 -1.6196 6 7 2.4632 0.1938 -2.2892 7 6 2.5610 -0.2210 -3.5678 8 8 2.3129 -1.3736 -3.8520 9 6 2.9776 0.7477 -4.6444 10 7 3.0073 0.0583 -5.9367 11 6 3.3543 0.7314 -7.0516 12 8 3.6434 1.9117 -6.9848 13 6 3.3847 0.0415 -8.3446 14 6 3.7135 0.6139 -9.5410 15 6 3.6634 -0.2654 -10.5965 16 6 3.2970 -1.5127 -10.2793 17 16 2.9963 -1.6534 -8.6058 18 6 3.2864 -1.5184 -0.6913 19 6 2.8099 -1.8826 0.7369 20 7 2.0300 -0.7141 1.1839 21 6 1.8037 -0.3564 2.4863 22 1 1.3896 0.6143 2.7155 23 6 2.1067 -1.2416 3.5118 24 7 1.9605 -2.5365 3.3281 25 14 2.7219 -0.5946 5.1527 26 1 2.7989 0.8876 5.1029 27 1 1.7859 -1.0063 6.2295 28 1 4.0707 -1.1508 5.4298 29 1 -0.3634 0.5193 0.8867 30 1 -0.3633 0.5082 -0.8932 31 1 -0.3633 -1.0277 0.0064 32 1 2.6613 1.1157 -2.0618 33 1 2.2644 1.5708 -4.6884 34 1 3.9697 1.1383 -4.4176 35 1 2.7766 -0.8823 -5.9901 36 1 3.9884 1.6531 -9.6465 37 1 3.8988 0.0298 -11.6084 38 1 3.2042 -2.3224 -10.9881 39 1 4.1670 -0.8769 -0.6577 40 1 3.4814 -2.4156 -1.2789 41 1 3.6656 -2.0412 1.3933 42 1 2.1806 -2.7722 0.7134 43 1 1.5631 -2.8682 2.5077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479726372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:22 Heat of formation + Delta-G solvation = -36.612005 kcal Electronic energy + Delta-G solvation = -25933.683258 eV Core-core repulsion = 22105.250206 eV Total energy + Delta-G solvation = -3828.433052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49090 -40.63052 -39.39252 -38.40248 -35.94974 -35.56651 -34.02224 -32.24769 -31.44045 -30.49970 -28.86344 -26.50483 -25.73612 -25.46161 -22.71161 -22.20394 -21.72412 -21.52188 -20.46699 -19.83431 -19.25590 -17.89993 -17.87035 -17.08245 -17.03010 -16.70829 -16.25031 -16.07320 -15.85913 -15.71217 -15.29816 -14.95815 -14.76105 -14.53755 -14.29489 -14.12906 -13.70592 -13.68920 -13.46694 -13.42248 -13.23450 -13.07875 -12.60004 -12.53184 -12.23956 -12.13204 -11.93240 -11.86003 -11.70720 -11.62094 -11.38718 -11.17070 -10.48627 -10.45145 -10.16788 -9.87343 -9.57018 -9.03950 -8.35669 -5.24968 -0.52405 0.47080 0.92732 1.36845 1.41360 1.57347 1.60471 1.66376 1.83135 2.08840 2.26256 2.65943 3.15661 3.35422 3.56343 3.69571 3.75562 3.76088 4.09672 4.13473 4.26343 4.30985 4.32976 4.34670 4.44958 4.48265 4.53988 4.70024 4.80943 4.91688 4.99203 5.01440 5.04421 5.06449 5.20220 5.20923 5.29726 5.35650 5.48618 5.72496 6.22368 6.31270 6.37991 6.88546 6.91332 7.04056 7.72241 8.30090 8.98914 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.032295 B = 0.001944 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.805239 B =14396.750746 C =14714.174266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.150 3.850 3 H 0.057 0.943 4 C 0.155 3.845 5 H 0.083 0.917 6 N -0.696 5.696 7 C 0.515 3.485 8 O -0.570 6.570 9 C 0.106 3.894 10 N -0.714 5.714 11 C 0.594 3.406 12 O -0.564 6.564 13 C -0.305 4.305 14 C -0.053 4.053 15 C -0.159 4.159 16 C -0.217 4.217 17 S 0.217 5.783 18 C -0.128 4.128 19 C 0.148 3.852 20 N -0.612 5.612 21 C -0.338 4.338 22 H 0.066 0.934 23 C -0.079 4.079 24 N -0.940 5.940 25 Si 1.112 2.888 26 H -0.271 1.271 27 H -0.295 1.295 28 H -0.291 1.291 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.419 0.581 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.411 0.589 36 H 0.154 0.846 37 H 0.172 0.828 38 H 0.199 0.801 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.025 0.975 42 H 0.001 0.999 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 5.420 -28.474 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.043 3.957 3 H 0.075 0.925 4 C 0.049 3.951 5 H 0.101 0.899 6 N -0.348 5.348 7 C 0.301 3.699 8 O -0.449 6.449 9 C -0.021 4.021 10 N -0.368 5.368 11 C 0.382 3.618 12 O -0.445 6.445 13 C -0.425 4.425 14 C -0.087 4.087 15 C -0.189 4.189 16 C -0.355 4.355 17 S 0.484 5.516 18 C -0.167 4.167 19 C 0.022 3.978 20 N -0.339 5.339 21 C -0.466 4.466 22 H 0.083 0.917 23 C -0.275 4.275 24 N -0.582 5.582 25 Si 0.937 3.063 26 H -0.195 1.195 27 H -0.222 1.222 28 H -0.218 1.218 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.257 0.743 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.249 0.751 36 H 0.171 0.829 37 H 0.189 0.811 38 H 0.216 0.784 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.043 0.957 42 H 0.019 0.981 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.263 3.839 -26.067 26.550 hybrid contribution -0.446 1.124 -1.874 2.230 sum 2.817 4.962 -27.941 28.518 Atomic orbital electron populations 1.22109 0.96917 1.00403 1.01087 1.21242 0.93125 0.95585 0.85716 0.92524 1.21688 0.96043 0.90884 0.86485 0.89850 1.45686 1.68454 1.14734 1.05952 1.20721 0.76604 0.88658 0.83868 1.90699 1.51314 1.20548 1.82388 1.21168 1.05717 0.94294 0.80922 1.45582 1.69814 1.15110 1.06294 1.17127 0.76086 0.85689 0.82854 1.90813 1.50799 1.16216 1.86692 1.24524 1.20157 1.00356 0.97509 1.21050 0.95688 1.01911 0.90067 1.20299 1.04790 0.92218 1.01610 1.25813 1.05696 1.03030 1.00924 1.83322 1.61839 1.04161 1.02258 1.23046 0.98076 1.00647 0.94957 1.21368 0.93420 0.89666 0.93325 1.44868 1.58403 1.29351 1.01258 1.19891 1.44300 0.99887 0.82503 0.91660 1.26950 1.01162 0.93971 1.05449 1.70850 1.45009 1.15014 1.27316 0.82926 0.76197 0.75213 0.71958 1.19546 1.22244 1.21759 0.94082 0.90687 0.95011 0.74321 0.86146 0.86325 0.75064 0.82851 0.81094 0.78425 0.90132 0.90573 0.95671 0.98103 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.20 9.14 71.98 0.66 -4.54 16 2 C 0.15 5.53 3.49 45.34 0.16 5.69 16 3 H 0.06 1.94 7.70 -2.39 -0.02 1.92 16 4 C 0.15 4.90 2.76 46.18 0.13 5.03 16 5 H 0.08 2.90 7.39 -2.39 -0.02 2.88 16 6 N -0.70 -15.84 5.21 -436.90 -2.28 -18.12 16 7 C 0.51 11.89 7.90 87.66 0.69 12.58 16 8 O -0.57 -17.18 15.39 -3.02 -0.05 -17.23 16 9 C 0.11 1.90 6.15 85.63 0.53 2.43 16 10 N -0.71 -14.66 5.52 -470.91 -2.60 -17.26 16 11 C 0.59 13.53 7.78 86.42 0.67 14.20 16 12 O -0.56 -15.84 16.84 -4.35 -0.07 -15.92 16 13 C -0.31 -5.70 6.45 24.08 0.16 -5.54 16 14 C -0.05 -0.83 10.01 21.71 0.22 -0.61 16 15 C -0.16 -1.69 10.15 21.08 0.21 -1.48 16 16 C -0.22 -2.08 10.92 66.81 0.73 -1.35 16 17 S 0.22 2.94 22.16 -56.49 -1.25 1.68 16 18 C -0.13 -4.48 6.77 31.99 0.22 -4.27 16 19 C 0.15 6.89 5.34 86.85 0.46 7.36 16 20 N -0.61 -29.55 3.06 -668.25 -2.04 -31.59 16 21 C -0.34 -18.41 9.56 84.04 0.80 -17.61 16 22 H 0.07 3.53 8.02 -2.91 -0.02 3.51 16 23 C -0.08 -4.47 4.95 84.87 0.42 -4.05 16 24 N -0.94 -57.50 12.88 21.65 0.28 -57.22 16 25 Si 1.11 50.84 30.03 68.60 2.06 52.90 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 27 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 28 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 29 H 0.04 1.58 8.02 -2.39 -0.02 1.56 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.42 7.10 8.33 -92.71 -0.77 6.32 16 33 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.41 8.43 6.55 -92.71 -0.61 7.83 16 36 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 39 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.08 2.56 8.14 -2.38 -0.02 2.55 16 41 H 0.02 1.29 7.83 -2.39 -0.02 1.28 16 42 H 0.00 0.06 7.02 -2.39 -0.02 0.04 16 43 H 0.25 15.86 6.45 -92.71 -0.60 15.26 16 Total: -1.00 -74.12 374.13 -0.05 -74.17 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -0.16 Total: 20.74 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 6.06 Total: 7.84 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -6.64 Total: -124.19 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.12 Total: -33.14 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.06 Total: 52.90 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.25 Total: 1.68 kcal Total: -74.12 -0.05 -74.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479726372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.557 kcal (2) G-P(sol) polarization free energy of solvation -74.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds