Wall clock time and date at job start Tue Mar 31 2020 20:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.99563 * 2 1 4 4 C 1.54326 * 109.88230 * 238.90915 * 2 1 3 5 5 H 1.08994 * 110.87064 * 336.81635 * 4 2 1 6 6 N 1.46496 * 110.72078 * 100.02635 * 4 2 1 7 7 C 1.36945 * 119.99718 * 199.97461 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47187 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 300.00154 * 11 9 7 14 14 H 1.48498 * 109.47018 * 60.00200 * 11 9 7 15 15 C 1.55159 * 102.94058 * 218.38706 * 4 2 1 16 16 C 1.54918 * 101.58370 * 35.49952 * 15 4 2 17 17 N 1.47018 * 109.88641 * 121.09750 * 2 1 3 18 18 C 1.34779 * 125.64775 * 298.39712 * 17 2 1 19 19 O 1.21284 * 119.99888 * 359.97438 * 18 17 2 20 20 C 1.50694 * 120.00238 * 179.97438 * 18 17 2 21 21 N 1.46502 * 109.47334 * 180.02562 * 20 18 17 22 22 C 1.34776 * 119.99983 * 180.02562 * 21 20 18 23 23 O 1.21630 * 120.00217 * 359.97438 * 22 21 20 24 24 C 1.47193 * 119.99938 * 179.97438 * 22 21 20 25 25 C 1.44427 * 123.46076 * 179.97438 * 24 22 21 26 26 C 1.32773 * 113.08137 * 179.97438 * 25 24 22 27 27 S 1.75506 * 110.57761 * 0.02562 * 26 25 24 28 28 C 1.36012 * 123.45752 * 359.70836 * 24 22 21 29 29 H 1.09005 * 109.46936 * 181.09498 * 1 2 3 30 30 H 1.08996 * 109.47276 * 301.09325 * 1 2 3 31 31 H 1.08996 * 109.47618 * 61.09521 * 1 2 3 32 32 H 0.96996 * 120.00499 * 19.97192 * 6 4 2 33 33 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 34 34 H 1.08998 * 111.00583 * 153.57053 * 15 4 2 35 35 H 1.09000 * 111.00380 * 277.43004 * 15 4 2 36 36 H 1.08998 * 110.36517 * 81.82493 * 16 15 4 37 37 H 1.08994 * 110.36981 * 204.04535 * 16 15 4 38 38 H 1.09002 * 109.47477 * 300.00213 * 20 18 17 39 39 H 1.09001 * 109.47096 * 60.00355 * 20 18 17 40 40 H 0.97003 * 119.99960 * 0.02562 * 21 20 18 41 41 H 1.07989 * 123.45891 * 359.95873 * 25 24 22 42 42 H 1.08001 * 124.71263 * 180.02562 * 26 25 24 43 43 H 1.07997 * 124.59071 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 1.3065 -1.4458 -1.6211 6 7 2.4554 0.1962 -2.2875 7 6 2.5574 -0.2224 -3.5874 8 1 2.3430 -1.2497 -3.8422 9 6 2.9365 0.6737 -4.5773 10 7 3.1984 1.9256 -4.2667 11 14 3.0764 0.1025 -6.3504 12 1 3.4938 1.2421 -7.2061 13 1 4.0861 -0.9824 -6.4427 14 1 1.7598 -0.4061 -6.8119 15 6 3.2876 -1.5141 -0.6925 16 6 2.8146 -1.8794 0.7368 17 7 2.0300 -0.7141 1.1838 18 6 1.8074 -0.3621 2.4657 19 8 1.1435 0.6210 2.7180 20 6 2.3833 -1.1901 3.5853 21 7 2.0012 -0.6041 4.8725 22 6 2.4067 -1.1795 6.0218 23 8 3.0894 -2.1856 5.9904 24 6 2.0233 -0.5904 7.3151 25 6 2.4151 -1.1445 8.5900 26 6 1.9564 -0.4482 9.6233 27 16 1.0161 0.9272 9.0716 28 6 1.2679 0.5346 7.4321 29 1 -0.3633 -1.0275 0.0196 30 1 -0.3633 0.5307 0.8800 31 1 -0.3634 0.4967 -0.8996 32 1 2.6483 1.1188 -2.0586 33 1 3.4636 2.5517 -4.9584 34 1 3.4852 -2.4109 -1.2797 35 1 4.1654 -0.8687 -0.6604 36 1 2.1887 -2.7714 0.7128 37 1 3.6717 -2.0356 1.3917 38 1 1.9972 -2.2074 3.5208 39 1 3.4700 -1.2079 3.5022 40 1 1.4564 0.1981 4.8976 41 1 3.0190 -2.0338 8.6923 42 1 2.1368 -0.6941 10.6593 43 1 0.8790 1.1014 6.5992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486098031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:40 Heat of formation + Delta-G solvation = -19.348394 kcal Electronic energy + Delta-G solvation = -25993.359015 eV Core-core repulsion = 22165.674570 eV Total energy + Delta-G solvation = -3827.684445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54503 -39.74029 -37.70938 -37.05954 -34.69204 -34.22493 -31.88376 -31.02801 -30.53974 -29.38698 -27.57334 -25.28799 -25.10776 -23.13978 -22.65820 -21.56714 -20.30798 -19.85145 -19.01077 -18.35097 -17.53551 -17.29953 -16.60569 -16.23903 -16.02659 -15.51368 -15.09063 -14.73204 -14.49600 -14.03299 -13.65416 -13.52600 -13.43305 -13.37809 -13.34842 -12.98087 -12.81481 -12.67869 -12.60436 -12.22059 -11.92504 -11.69456 -11.51970 -11.25252 -11.09042 -10.87220 -10.64424 -10.33391 -10.25365 -10.12086 -9.88490 -9.73870 -9.52008 -9.39985 -8.99143 -8.83104 -8.57224 -7.08613 -5.85864 -3.16817 0.37529 1.13549 1.51472 1.64784 2.51776 2.58132 3.07771 3.21450 3.38755 3.43678 3.44620 4.29956 4.38751 4.50714 4.65062 4.85391 4.92650 4.98271 5.08611 5.13156 5.18925 5.30815 5.40290 5.41217 5.54073 5.58176 5.68182 5.69684 5.82672 5.86183 5.99816 6.00932 6.07168 6.22903 6.36634 6.50611 6.53311 6.59991 6.85688 7.21099 7.54980 7.61200 7.91244 8.06211 8.31266 9.42792 9.96441 10.30994 11.36095 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.031553 B = 0.001906 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.184446 B =14687.429142 C =15134.677114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.080 0.920 4 C 0.176 3.824 5 H 0.066 0.934 6 N -0.714 5.714 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.291 1.291 13 H -0.285 1.285 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.093 3.907 17 N -0.602 5.602 18 C 0.522 3.478 19 O -0.544 6.544 20 C 0.105 3.895 21 N -0.712 5.712 22 C 0.580 3.420 23 O -0.537 6.537 24 C -0.155 4.155 25 C -0.084 4.084 26 C -0.238 4.238 27 S 0.189 5.811 28 C -0.208 4.208 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.411 0.589 41 H 0.155 0.845 42 H 0.170 0.830 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.958 -5.438 26.178 27.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.098 0.902 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.197 4.197 16 C -0.030 4.030 17 N -0.335 5.335 18 C 0.309 3.691 19 O -0.423 6.423 20 C -0.022 4.022 21 N -0.367 5.367 22 C 0.366 3.634 23 O -0.416 6.416 24 C -0.173 4.173 25 C -0.113 4.113 26 C -0.373 4.373 27 S 0.454 5.546 28 C -0.347 4.347 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.220 0.780 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.249 0.751 41 H 0.173 0.827 42 H 0.188 0.812 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.616 -4.508 26.883 27.647 hybrid contribution 0.794 -0.776 -1.815 2.127 sum -3.822 -5.283 25.069 25.903 Atomic orbital electron populations 1.22043 0.94696 1.01683 1.02802 1.21956 0.94524 0.96950 0.84169 0.90241 1.21247 0.93573 0.91638 0.87092 0.91627 1.42335 1.80966 1.09082 1.03115 1.19147 1.39559 0.95136 0.83789 0.91004 1.24775 1.01984 0.95637 0.98218 1.69655 1.52313 1.02995 1.32747 0.86244 0.77841 0.77306 0.84615 1.21669 1.21171 1.21176 1.23585 1.01452 1.01898 0.92762 1.22504 0.94772 0.88114 0.97621 1.48493 1.51597 1.28699 1.04728 1.19994 0.80873 0.85355 0.82835 1.90668 1.40748 1.27810 1.83048 1.21058 1.01682 0.97563 0.81875 1.45554 1.55170 1.31624 1.04375 1.17542 0.79498 0.83446 0.82903 1.90801 1.38395 1.24822 1.87551 1.20249 1.04800 0.97887 0.94375 1.21135 1.00145 1.00831 0.89174 1.25543 1.07012 1.01194 1.03567 1.83134 1.49260 1.26576 0.95581 1.25800 1.03898 1.01197 1.03775 0.93015 0.92023 0.90989 0.77980 0.93284 0.90346 0.90502 0.91221 0.90933 0.88227 0.88183 0.75112 0.82741 0.81210 0.80965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.10 37.15 0.34 -2.09 16 2 C 0.13 2.13 3.21 -66.96 -0.21 1.91 16 3 H 0.08 1.51 7.69 -51.93 -0.40 1.11 16 4 C 0.18 3.22 3.11 -66.10 -0.21 3.01 16 5 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 6 N -0.71 -16.81 5.25 -51.65 -0.27 -17.08 16 7 C -0.25 -6.43 9.98 -15.06 -0.15 -6.58 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.21 13.06 55.49 0.72 -26.49 16 11 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 C -0.16 -2.41 6.77 -24.58 -0.17 -2.57 16 16 C 0.09 1.13 6.69 -2.53 -0.02 1.11 16 17 N -0.60 -8.55 3.06 -163.02 -0.50 -9.05 16 18 C 0.52 7.27 7.71 -10.99 -0.08 7.19 16 19 O -0.54 -8.93 14.72 5.55 0.08 -8.84 16 20 C 0.11 1.20 5.16 -5.20 -0.03 1.17 16 21 N -0.71 -8.04 5.50 -62.64 -0.34 -8.38 16 22 C 0.58 7.05 7.79 -12.62 -0.10 6.95 16 23 O -0.54 -8.03 16.80 5.25 0.09 -7.94 16 24 C -0.15 -1.54 5.98 -104.63 -0.63 -2.17 16 25 C -0.08 -0.73 10.10 -39.02 -0.39 -1.12 16 26 C -0.24 -1.55 11.12 28.86 0.32 -1.23 16 27 S 0.19 1.16 23.02 -107.50 -2.48 -1.32 16 28 C -0.21 -1.65 10.38 29.93 0.31 -1.34 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.99 6.90 -51.93 -0.36 0.63 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.39 9.84 7.51 -40.82 -0.31 9.53 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.74 7.48 -51.93 -0.39 0.35 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.10 1.09 7.85 -51.93 -0.41 0.68 16 40 H 0.41 4.35 5.93 -40.82 -0.24 4.11 16 41 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.17 1.13 7.01 -52.49 -0.37 0.76 16 LS Contribution 374.19 15.07 5.64 5.64 Total: -1.00 -32.04 374.19 -9.00 -41.04 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.81 Total: 11.95 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.11 Total: 3.88 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.39 Total: -61.00 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.17 Total: -16.79 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.48 Total: -1.32 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.04 -9.00 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486098031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.692 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds