Wall clock time and date at job start Tue Mar 31 2020 20:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47104 * 2 1 4 4 C 1.52998 * 109.47031 * 240.00528 * 2 1 3 5 5 C 1.53002 * 109.47316 * 175.00163 * 4 2 1 6 6 N 1.46499 * 109.47182 * 179.97438 * 5 4 2 7 7 C 1.34779 * 119.99945 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99480 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.00085 * 180.02562 * 7 6 5 10 10 S 1.80998 * 109.47277 * 180.02562 * 9 7 6 11 11 C 1.76194 * 100.00158 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00512 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99906 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99837 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00213 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47224 * 89.99591 * 15 13 11 17 17 H 1.48503 * 109.47266 * 210.00068 * 15 13 11 18 18 H 1.48502 * 109.46950 * 329.99614 * 15 13 11 19 19 N 1.46499 * 109.46993 * 120.00302 * 2 1 3 20 20 C 1.34775 * 120.00225 * 274.99734 * 19 2 1 21 21 O 1.21552 * 119.99611 * 0.02562 * 20 19 2 22 22 C 1.47838 * 120.00323 * 180.02562 * 20 19 2 23 23 C 1.40017 * 120.56117 * 180.02562 * 22 20 19 24 24 C 1.38354 * 118.29016 * 179.97438 * 23 22 20 25 25 C 1.38355 * 119.30304 * 359.97438 * 24 23 22 26 26 N 1.31929 * 121.07980 * 359.74657 * 25 24 23 27 27 C 1.31695 * 121.87667 * 0.52704 * 26 25 24 28 28 H 1.09005 * 109.47056 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47371 * 299.99543 * 1 2 3 30 30 H 1.09002 * 109.47505 * 59.99585 * 1 2 3 31 31 H 1.09008 * 109.47308 * 294.99783 * 4 2 1 32 32 H 1.09003 * 109.47522 * 54.99900 * 4 2 1 33 33 H 1.09003 * 109.46665 * 299.99554 * 5 4 2 34 34 H 1.09003 * 109.47039 * 59.99442 * 5 4 2 35 35 H 0.96996 * 120.00029 * 0.02562 * 6 5 4 36 36 H 1.09003 * 109.46954 * 299.99916 * 9 7 6 37 37 H 1.08995 * 109.47675 * 60.00068 * 9 7 6 38 38 H 0.97003 * 119.99895 * 179.97438 * 14 13 11 39 39 H 0.97005 * 120.00022 * 95.00439 * 19 2 1 40 40 H 1.08004 * 120.85328 * 0.02562 * 23 22 20 41 41 H 1.08003 * 120.35117 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.45923 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.71866 * 179.75723 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0532 -1.3043 -2.5097 7 6 5.3740 -1.3397 -2.7754 8 8 6.1583 -0.7999 -2.0240 9 6 5.8763 -2.0500 -4.0058 10 16 7.6802 -1.9225 -4.0820 11 6 7.9872 -2.8123 -5.5714 12 1 7.1637 -3.2357 -6.1272 13 6 9.2877 -2.9693 -6.0305 14 7 9.5171 -3.6345 -7.1430 15 14 10.7124 -2.2378 -5.0690 16 1 11.2051 -3.2314 -4.0815 17 1 11.8101 -1.8827 -6.0040 18 1 10.2544 -1.0177 -4.3571 19 7 2.0183 -0.6907 1.1961 20 6 2.1471 -0.0184 2.3571 21 8 1.8576 1.1609 2.4118 22 6 2.6404 -0.7152 3.5641 23 6 2.7781 -0.0284 4.7764 24 6 3.2435 -0.7266 5.8764 25 6 3.5543 -2.0683 5.7450 26 7 3.4093 -2.6911 4.5910 27 6 2.9751 -2.0689 3.5146 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.7516 -1.7715 -1.2057 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4371 -1.3574 34 1 3.9994 -1.0728 -0.4260 35 1 3.4258 -1.7356 -3.1107 36 1 5.5882 -3.1004 -3.9620 37 1 5.4415 -1.5908 -4.8935 38 1 10.4259 -3.7439 -7.4640 39 1 2.2491 -1.6319 1.1525 40 1 2.5268 1.0194 4.8510 41 1 3.3620 -0.2297 6.8280 42 1 3.9181 -2.6157 6.6019 43 1 2.8732 -2.6120 2.5867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495452760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:18 Heat of formation + Delta-G solvation = -46.872682 kcal Electronic energy + Delta-G solvation = -25149.697743 eV Core-core repulsion = 21320.819755 eV Total energy + Delta-G solvation = -3828.877988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08633 -39.71673 -39.21246 -36.95935 -34.62036 -33.06659 -32.76700 -32.44920 -31.17789 -30.12779 -28.26870 -25.63425 -25.28109 -24.05687 -23.51854 -21.79074 -21.06707 -20.45950 -18.58682 -17.87433 -17.44458 -16.96617 -16.36617 -16.28334 -16.07580 -15.51225 -15.41289 -15.24222 -14.96908 -14.32294 -14.20015 -14.10251 -13.87018 -13.80692 -13.58722 -13.38330 -12.95544 -12.80640 -12.70847 -12.46744 -12.31866 -11.77527 -11.66348 -11.37294 -11.26917 -11.01591 -10.65308 -10.61701 -10.42699 -9.90542 -9.87094 -9.78247 -9.60284 -9.49737 -9.05175 -8.99296 -8.51446 -6.93301 -6.30051 -4.01929 0.15035 0.71264 2.42825 2.61457 2.73626 2.94284 3.27018 3.33002 3.38235 3.50081 3.61695 3.77717 4.20403 4.28864 4.32207 4.34272 4.39351 4.43773 4.51216 4.63584 4.73378 4.88936 4.99431 5.01002 5.06784 5.09052 5.20134 5.27830 5.31231 5.47044 5.51388 5.56852 5.65208 5.74958 5.75623 5.81862 5.98642 6.00170 6.05877 6.46157 6.98259 7.35024 7.55549 7.72204 7.92988 8.40283 8.45397 9.16160 10.79109 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.002110 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.403376 B =13265.007742 C =14642.617454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.096 0.904 4 C -0.141 4.141 5 C 0.120 3.880 6 N -0.738 5.738 7 C 0.529 3.471 8 O -0.518 6.518 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.720 5.720 20 C 0.567 3.433 21 O -0.532 6.532 22 C -0.189 4.189 23 C -0.016 4.016 24 C -0.180 4.180 25 C 0.122 3.878 26 N -0.486 5.486 27 C 0.137 3.863 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.401 0.599 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.162 0.838 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.478 4.530 22.199 31.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.114 0.886 4 C -0.179 4.179 5 C -0.004 4.004 6 N -0.393 5.393 7 C 0.315 3.685 8 O -0.393 6.393 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.372 5.372 20 C 0.354 3.646 21 O -0.409 6.409 22 C -0.194 4.194 23 C -0.043 4.043 24 C -0.199 4.199 25 C -0.034 4.034 26 N -0.194 5.194 27 C -0.022 4.022 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.234 0.766 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.236 0.764 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.180 0.820 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.033 5.337 23.287 31.178 hybrid contribution -0.547 -0.320 -0.979 1.166 sum -20.580 5.017 22.308 30.763 Atomic orbital electron populations 1.22171 0.94520 1.02431 1.02974 1.20943 0.94332 0.97816 0.82765 0.88627 1.22147 0.95393 1.02096 0.98257 1.21278 0.92671 0.98072 0.88384 1.45953 1.07739 1.58487 1.27115 1.20303 0.81638 0.79758 0.86771 1.90713 1.55001 1.44438 1.49106 1.23276 1.03086 1.03224 0.97889 1.84815 0.98237 1.73713 1.34824 1.22310 0.97282 1.39278 1.08034 0.89376 1.24718 0.98318 0.93887 0.94421 1.69939 1.21722 1.39332 1.20666 0.86733 0.82433 0.82032 0.80648 1.19199 1.19930 1.15924 1.46030 1.67424 1.14170 1.09624 1.18014 0.77412 0.86393 0.82821 1.90791 1.49951 1.15307 1.84860 1.21005 1.06684 0.96136 0.95612 1.21764 0.91034 1.00838 0.90638 1.22213 1.01544 0.96065 1.00106 1.23075 0.92828 0.92106 0.95384 1.67732 1.12937 1.39349 0.99400 1.22999 0.91536 0.90488 0.97161 0.92216 0.91846 0.91175 0.90343 0.89122 0.91425 0.91638 0.76638 0.88487 0.88441 0.91932 0.76372 0.83436 0.83829 0.82034 0.82480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.48 37.16 0.35 -0.59 16 2 C 0.15 0.98 2.57 -67.93 -0.17 0.81 16 3 H 0.10 0.83 7.58 -51.93 -0.39 0.43 16 4 C -0.14 -0.81 4.87 -26.73 -0.13 -0.94 16 5 C 0.12 1.18 5.56 -4.04 -0.02 1.16 16 6 N -0.74 -8.50 5.56 -60.29 -0.33 -8.84 16 7 C 0.53 9.11 7.85 -10.99 -0.09 9.03 16 8 O -0.52 -11.11 15.86 5.55 0.09 -11.02 16 9 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 10 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 11 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 12 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 13 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 14 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 15 Si 0.86 21.79 27.74 -169.99 -4.72 17.08 16 16 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 19 N -0.72 -5.03 4.48 -54.75 -0.25 -5.27 16 20 C 0.57 5.40 7.75 -12.33 -0.10 5.30 16 21 O -0.53 -6.76 16.08 5.32 0.09 -6.67 16 22 C -0.19 -1.60 5.89 -104.82 -0.62 -2.22 16 23 C -0.02 -0.12 9.72 -38.87 -0.38 -0.50 16 24 C -0.18 -1.05 10.10 -39.50 -0.40 -1.45 16 25 C 0.12 0.81 11.17 -17.47 -0.20 0.62 16 26 N -0.49 -4.30 10.35 -12.91 -0.13 -4.43 16 27 C 0.14 1.08 10.71 -17.13 -0.18 0.89 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.71 7.75 -51.93 -0.40 0.30 16 35 H 0.40 3.33 8.47 -40.82 -0.35 2.99 16 36 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 37 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 38 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.40 1.97 6.67 -40.82 -0.27 1.70 16 40 H 0.15 1.05 7.74 -52.48 -0.41 0.65 16 41 H 0.14 0.44 8.06 -52.48 -0.42 0.01 16 42 H 0.16 0.62 8.06 -52.49 -0.42 0.19 16 43 H 0.16 0.85 6.42 -52.49 -0.34 0.51 16 LS Contribution 383.13 15.07 5.77 5.77 Total: -1.00 -37.82 383.13 -8.16 -45.97 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.96 Total: 0.66 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.49 Total: -1.96 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.06 Total: -44.24 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.17 Total: -17.70 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.72 Total: 17.08 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.82 -8.16 -45.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495452760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.899 kcal (2) G-P(sol) polarization free energy of solvation -37.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds