Wall clock time and date at job start Tue Mar 31 2020 20:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52986 * 1 3 3 H 1.09003 * 110.30687 * 2 1 4 4 C 1.54392 * 110.34429 * 122.28420 * 2 1 3 5 5 N 1.48444 * 104.65382 * 142.74136 * 4 2 1 6 6 C 1.34770 * 127.98109 * 140.37044 * 5 4 2 7 7 O 1.21639 * 119.99657 * 177.18238 * 6 5 4 8 8 C 1.47181 * 120.00303 * 357.18073 * 6 5 4 9 9 C 1.44429 * 123.46536 * 204.38939 * 8 6 5 10 10 C 1.32770 * 113.08536 * 179.80762 * 9 8 6 11 11 S 1.75498 * 110.57582 * 0.44294 * 10 9 8 12 12 C 1.36011 * 123.46023 * 24.68393 * 8 6 5 13 13 C 1.48153 * 104.17641 * 320.44416 * 5 4 2 14 14 C 1.54286 * 110.34678 * 237.82549 * 2 1 3 15 15 H 1.08998 * 110.42703 * 0.04219 * 14 2 1 16 16 N 1.46895 * 110.34494 * 122.25700 * 14 2 1 17 17 C 1.46909 * 110.99983 * 201.99178 * 16 14 2 18 18 C 1.50694 * 109.47150 * 179.97438 * 17 16 14 19 19 O 1.21291 * 119.99910 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99802 * 180.02562 * 18 17 16 21 21 C 1.37107 * 119.99931 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99576 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99883 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00183 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99843 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47108 * 60.00381 * 25 23 21 27 27 H 1.48497 * 109.47120 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47116 * 300.00325 * 25 23 21 29 29 H 1.09007 * 109.47171 * 182.17367 * 1 2 3 30 30 H 1.09000 * 109.47730 * 302.17835 * 1 2 3 31 31 H 1.08998 * 109.47528 * 62.17798 * 1 2 3 32 32 H 1.09005 * 110.40729 * 261.52154 * 4 2 1 33 33 H 1.08993 * 110.40608 * 23.83848 * 4 2 1 34 34 H 1.08002 * 123.45437 * 0.02562 * 9 8 6 35 35 H 1.07998 * 124.70651 * 180.21039 * 10 9 8 36 36 H 1.07999 * 124.59382 * 359.97438 * 12 8 6 37 37 H 1.09003 * 110.40482 * 280.73015 * 13 5 4 38 38 H 1.08999 * 110.39963 * 158.41559 * 13 5 4 39 39 H 1.00900 * 111.00490 * 78.04014 * 16 14 2 40 40 H 1.08999 * 109.47052 * 300.00159 * 17 16 14 41 41 H 1.09004 * 109.47022 * 59.99887 * 17 16 14 42 42 H 0.97001 * 120.00309 * 359.97438 * 20 18 17 43 43 H 0.96998 * 120.00397 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 6 2.0666 -0.7732 1.2238 5 7 3.2689 -1.4841 0.7211 6 6 4.4460 -1.6702 1.3505 7 8 5.3231 -2.3243 0.8190 8 6 4.6703 -1.0821 2.6810 9 6 5.9807 -0.7794 3.2073 10 6 5.9434 -0.2508 4.4246 11 16 4.2866 -0.1123 4.9864 12 6 3.6650 -0.7732 3.5435 13 6 2.8801 -1.9416 -0.6333 14 6 2.0663 -0.7703 -1.2244 15 1 1.2409 -1.1487 -1.8274 16 7 2.9331 0.0967 -2.0336 17 6 3.0299 -0.3965 -3.4141 18 6 3.9246 0.5165 -4.2121 19 8 4.4321 1.4827 -3.6829 20 7 4.1607 0.2594 -5.5139 21 6 4.9743 1.0904 -6.2401 22 1 5.4262 1.9507 -5.7689 23 6 5.2182 0.8250 -7.5820 24 7 4.6688 -0.2220 -8.1552 25 14 6.3273 1.9568 -8.5713 26 1 7.6801 1.9832 -7.9592 27 1 6.4256 1.4579 -9.9665 28 1 5.7585 3.3284 -8.5744 29 1 -0.3634 -1.0270 0.0390 30 1 -0.3634 0.5473 0.8698 31 1 -0.3634 0.4796 -0.9088 32 1 2.3400 -0.0813 2.0206 33 1 1.3226 -1.4861 1.5792 34 1 6.8968 -0.9610 2.6648 35 1 6.8123 0.0487 4.9919 36 1 2.6151 -0.9260 3.3415 37 1 2.2639 -2.8384 -0.5691 38 1 3.7662 -2.1325 -1.2387 39 1 3.8475 0.1848 -1.6163 40 1 3.4470 -1.4035 -3.4117 41 1 2.0370 -0.4155 -3.8635 42 1 3.7552 -0.5135 -5.9370 43 1 4.8387 -0.4071 -9.0921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502700921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:29 Heat of formation + Delta-G solvation = -21.042775 kcal Electronic energy + Delta-G solvation = -26407.933457 eV Core-core repulsion = 22580.175538 eV Total energy + Delta-G solvation = -3827.757919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.54116 -38.66112 -37.89895 -36.90294 -34.62689 -33.75544 -32.68813 -31.19905 -30.60518 -28.54457 -26.89419 -26.35578 -24.99682 -24.04164 -22.57094 -21.07398 -20.26870 -19.39949 -19.17507 -17.90710 -17.75752 -17.17254 -16.37219 -16.04265 -15.66255 -15.15235 -14.84936 -14.50725 -14.50191 -14.06142 -14.01026 -13.61179 -13.49410 -13.40060 -13.07572 -12.90361 -12.68605 -12.66494 -12.42081 -12.11878 -12.02992 -11.58957 -11.53210 -11.41956 -11.16251 -11.07222 -10.99662 -10.83906 -10.42135 -10.18935 -10.04342 -9.47759 -9.34982 -9.09671 -8.73577 -8.42640 -8.03694 -7.93446 -6.39224 -3.79989 0.47582 1.21583 1.57689 1.79249 2.68153 3.10651 3.22318 3.27621 3.32299 3.93104 4.05886 4.24444 4.28531 4.33340 4.44256 4.70684 4.81819 4.95283 5.01601 5.08280 5.14839 5.16205 5.19225 5.27767 5.31236 5.47919 5.50402 5.53609 5.58096 5.74788 5.77828 5.86249 5.88480 5.99344 5.99796 6.04637 6.15707 6.31665 7.20551 7.33875 7.57480 7.60720 7.99903 8.08482 8.63711 9.20239 9.56601 10.08196 10.78505 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.002409 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.572319 B =11621.759692 C =12541.099350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.098 0.902 4 C 0.089 3.911 5 N -0.614 5.614 6 C 0.596 3.404 7 O -0.533 6.533 8 C -0.143 4.143 9 C -0.085 4.085 10 C -0.233 4.233 11 S 0.176 5.824 12 C -0.222 4.222 13 C 0.073 3.927 14 C 0.078 3.922 15 H 0.097 0.903 16 N -0.656 5.656 17 C 0.048 3.952 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.179 0.821 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.352 0.648 40 H 0.044 0.956 41 H 0.088 0.912 42 H 0.392 0.608 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 -4.032 25.445 27.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.116 0.884 4 C -0.034 4.034 5 N -0.348 5.348 6 C 0.384 3.616 7 O -0.410 6.410 8 C -0.162 4.162 9 C -0.114 4.114 10 C -0.367 4.367 11 S 0.441 5.559 12 C -0.360 4.360 13 C -0.051 4.051 14 C -0.034 4.034 15 H 0.116 0.884 16 N -0.288 5.288 17 C -0.085 4.085 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.172 0.828 35 H 0.188 0.812 36 H 0.196 0.804 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.173 0.827 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.225 0.775 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.816 -2.828 26.540 28.108 hybrid contribution 1.427 -1.348 -2.134 2.900 sum -7.389 -4.177 24.405 25.839 Atomic orbital electron populations 1.21784 0.93651 1.01761 1.02550 1.22176 0.96118 1.00937 0.92605 0.88410 1.23026 0.86597 0.95799 0.97983 1.48785 1.12768 1.55613 1.17615 1.17220 0.80354 0.79868 0.84111 1.90838 1.42623 1.40463 1.67087 1.20235 0.93178 1.06768 0.95979 1.21164 0.97139 0.98441 0.94703 1.25507 1.00808 1.09734 1.00698 1.83045 0.98375 1.59016 1.15428 1.26098 1.04226 1.05900 0.99784 1.23238 1.00253 0.98140 0.83510 1.22694 0.96073 0.90480 0.94160 0.88449 1.60243 1.18681 1.48664 1.01168 1.21741 1.00606 0.96442 0.89696 1.19776 0.86181 0.88145 0.83253 1.90526 1.54664 1.31079 1.70448 1.41850 1.43560 1.26507 1.08083 1.19653 1.23611 1.07730 0.91878 0.88005 1.25256 0.98346 0.97265 0.97054 1.69603 1.44379 1.27100 1.13288 0.85918 0.80234 0.79910 0.78168 1.19914 1.20977 1.19886 0.92629 0.92408 0.91562 0.89319 0.90644 0.82809 0.81212 0.80412 0.90722 0.89636 0.82730 0.93754 0.89423 0.77456 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.92 37.15 0.33 -0.68 16 2 C -0.10 -0.93 3.45 -89.22 -0.31 -1.24 16 3 H 0.10 1.11 7.95 -51.93 -0.41 0.70 16 4 C 0.09 0.74 5.10 -2.24 -0.01 0.73 16 5 N -0.61 -7.32 3.33 -170.41 -0.57 -7.89 16 6 C 0.60 8.54 7.80 -12.63 -0.10 8.44 16 7 O -0.53 -9.75 17.19 5.24 0.09 -9.66 16 8 C -0.14 -1.65 5.84 -104.63 -0.61 -2.27 16 9 C -0.09 -0.91 10.20 -39.02 -0.40 -1.31 16 10 C -0.23 -1.87 11.12 28.86 0.32 -1.55 16 11 S 0.18 1.19 23.02 -107.50 -2.48 -1.28 16 12 C -0.22 -1.87 8.95 29.93 0.27 -1.60 16 13 C 0.07 0.87 6.42 -2.40 -0.02 0.85 16 14 C 0.08 0.90 3.01 -66.31 -0.20 0.70 16 15 H 0.10 1.00 7.44 -51.93 -0.39 0.62 16 16 N -0.66 -10.59 5.78 -106.51 -0.62 -11.21 16 17 C 0.05 0.84 5.97 -4.97 -0.03 0.81 16 18 C 0.44 10.64 7.82 -10.99 -0.09 10.55 16 19 O -0.58 -16.24 15.78 5.55 0.09 -16.15 16 20 N -0.56 -14.56 5.29 -10.97 -0.06 -14.62 16 21 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.90 13.05 55.50 0.72 -24.17 16 25 Si 0.93 21.44 29.55 -169.99 -5.02 16.42 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.05 0.34 8.10 -51.93 -0.42 -0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.66 5.11 -51.93 -0.27 0.39 16 33 H 0.08 0.47 7.83 -51.93 -0.41 0.07 16 34 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.18 1.12 5.38 -52.49 -0.28 0.84 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.25 7.45 -51.93 -0.39 0.86 16 39 H 0.35 6.42 8.19 -39.29 -0.32 6.10 16 40 H 0.04 0.72 7.79 -51.93 -0.40 0.32 16 41 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 42 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 43 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -34.70 371.31 -8.97 -43.68 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -5.65 Total: 13.97 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -1.08 Total: 5.31 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.52 Total: -57.88 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: 0.18 Total: -25.81 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.48 Total: -1.28 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.70 -8.97 -43.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502700921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.634 kcal (2) G-P(sol) polarization free energy of solvation -34.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds