Wall clock time and date at job start Tue Mar 31 2020 20:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52986 * 1 3 3 H 1.09003 * 110.30687 * 2 1 4 4 C 1.54392 * 110.34429 * 122.28420 * 2 1 3 5 5 N 1.48444 * 104.65382 * 142.74136 * 4 2 1 6 6 C 1.34770 * 127.98109 * 140.37044 * 5 4 2 7 7 O 1.21639 * 119.99657 * 177.18238 * 6 5 4 8 8 C 1.47181 * 120.00303 * 357.18073 * 6 5 4 9 9 C 1.44429 * 123.46536 * 204.38939 * 8 6 5 10 10 C 1.32770 * 113.08536 * 179.80762 * 9 8 6 11 11 S 1.75498 * 110.57582 * 0.44294 * 10 9 8 12 12 C 1.36011 * 123.46023 * 24.68393 * 8 6 5 13 13 C 1.48153 * 104.17641 * 320.44416 * 5 4 2 14 14 C 1.54286 * 110.34678 * 237.82549 * 2 1 3 15 15 H 1.08998 * 110.42703 * 0.04219 * 14 2 1 16 16 N 1.46895 * 110.34494 * 122.25700 * 14 2 1 17 17 C 1.46909 * 110.99983 * 201.99178 * 16 14 2 18 18 C 1.50694 * 109.47150 * 179.97438 * 17 16 14 19 19 O 1.21291 * 119.99910 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99802 * 180.02562 * 18 17 16 21 21 C 1.37107 * 119.99931 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99576 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99883 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00183 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99843 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47108 * 60.00381 * 25 23 21 27 27 H 1.48497 * 109.47120 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47116 * 300.00325 * 25 23 21 29 29 H 1.09007 * 109.47171 * 182.17367 * 1 2 3 30 30 H 1.09000 * 109.47730 * 302.17835 * 1 2 3 31 31 H 1.08998 * 109.47528 * 62.17798 * 1 2 3 32 32 H 1.09005 * 110.40729 * 261.52154 * 4 2 1 33 33 H 1.08993 * 110.40608 * 23.83848 * 4 2 1 34 34 H 1.08002 * 123.45437 * 0.02562 * 9 8 6 35 35 H 1.07998 * 124.70651 * 180.21039 * 10 9 8 36 36 H 1.07999 * 124.59382 * 359.97438 * 12 8 6 37 37 H 1.09003 * 110.40482 * 280.73015 * 13 5 4 38 38 H 1.08999 * 110.39963 * 158.41559 * 13 5 4 39 39 H 1.00900 * 111.00490 * 78.04014 * 16 14 2 40 40 H 1.08999 * 109.47052 * 300.00159 * 17 16 14 41 41 H 1.09004 * 109.47022 * 59.99887 * 17 16 14 42 42 H 0.97001 * 120.00309 * 359.97438 * 20 18 17 43 43 H 0.96998 * 120.00397 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 6 2.0666 -0.7732 1.2238 5 7 3.2689 -1.4841 0.7211 6 6 4.4460 -1.6702 1.3505 7 8 5.3231 -2.3243 0.8190 8 6 4.6703 -1.0821 2.6810 9 6 5.9807 -0.7794 3.2073 10 6 5.9434 -0.2508 4.4246 11 16 4.2866 -0.1123 4.9864 12 6 3.6650 -0.7732 3.5435 13 6 2.8801 -1.9416 -0.6333 14 6 2.0663 -0.7703 -1.2244 15 1 1.2409 -1.1487 -1.8274 16 7 2.9331 0.0967 -2.0336 17 6 3.0299 -0.3965 -3.4141 18 6 3.9246 0.5165 -4.2121 19 8 4.4321 1.4827 -3.6829 20 7 4.1607 0.2594 -5.5139 21 6 4.9743 1.0904 -6.2401 22 1 5.4262 1.9507 -5.7689 23 6 5.2182 0.8250 -7.5820 24 7 4.6688 -0.2220 -8.1552 25 14 6.3273 1.9568 -8.5713 26 1 7.6801 1.9832 -7.9592 27 1 6.4256 1.4579 -9.9665 28 1 5.7585 3.3284 -8.5744 29 1 -0.3634 -1.0270 0.0390 30 1 -0.3634 0.5473 0.8698 31 1 -0.3634 0.4796 -0.9088 32 1 2.3400 -0.0813 2.0206 33 1 1.3226 -1.4861 1.5792 34 1 6.8968 -0.9610 2.6648 35 1 6.8123 0.0487 4.9919 36 1 2.6151 -0.9260 3.3415 37 1 2.2639 -2.8384 -0.5691 38 1 3.7662 -2.1325 -1.2387 39 1 3.8475 0.1848 -1.6163 40 1 3.4470 -1.4035 -3.4117 41 1 2.0370 -0.4155 -3.8635 42 1 3.7552 -0.5135 -5.9370 43 1 4.8387 -0.4071 -9.0921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502700921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:28 Heat of formation + Delta-G solvation = -47.269884 kcal Electronic energy + Delta-G solvation = -26409.070750 eV Core-core repulsion = 22580.175538 eV Total energy + Delta-G solvation = -3828.895212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48594 -40.20951 -39.23341 -37.77266 -36.20069 -35.49757 -33.58421 -33.26478 -31.41670 -29.64304 -27.88390 -27.58613 -26.21456 -25.36849 -23.54289 -21.90483 -21.30970 -20.89317 -20.20820 -19.92774 -18.52287 -18.18034 -17.69355 -17.28013 -16.78874 -16.53945 -16.31440 -16.06344 -15.70165 -15.35288 -15.22425 -14.94162 -14.47080 -14.23717 -14.10456 -13.83569 -13.70423 -13.59579 -13.52445 -13.38367 -13.12706 -13.02990 -12.92731 -12.81117 -12.46742 -12.15173 -12.12205 -12.00670 -11.83566 -11.62877 -11.53532 -11.05599 -10.40041 -10.08587 -10.04232 -10.01957 -9.40962 -9.24565 -8.49229 -5.98388 -0.22717 0.60826 0.89837 0.97821 1.37548 1.39184 1.50513 1.78447 2.01690 2.18360 2.27008 2.85778 3.17464 3.37004 3.50614 3.52560 3.78944 3.89946 4.08681 4.14758 4.27056 4.28600 4.33449 4.38447 4.43116 4.48389 4.55296 4.62755 4.65609 4.76627 4.79553 4.89558 5.06455 5.10556 5.16762 5.26794 5.35039 5.37918 5.49351 5.88438 6.08751 6.21422 6.41108 6.56969 6.99368 7.09329 7.52383 8.08055 8.68010 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.002409 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.572319 B =11621.759692 C =12541.099350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 H 0.075 0.925 4 C 0.090 3.910 5 N -0.615 5.615 6 C 0.586 3.414 7 O -0.594 6.594 8 C -0.181 4.181 9 C -0.120 4.120 10 C -0.231 4.231 11 S 0.252 5.748 12 C -0.215 4.215 13 C 0.072 3.928 14 C 0.079 3.921 15 H 0.119 0.881 16 N -0.667 5.667 17 C 0.063 3.937 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.572 5.572 21 C -0.337 4.337 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.268 1.268 28 H -0.270 1.270 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.193 0.807 36 H 0.203 0.797 37 H 0.102 0.898 38 H 0.050 0.950 39 H 0.335 0.665 40 H 0.060 0.940 41 H 0.115 0.885 42 H 0.397 0.603 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.139 -3.950 27.389 29.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.032 4.032 5 N -0.347 5.347 6 C 0.376 3.624 7 O -0.476 6.476 8 C -0.199 4.199 9 C -0.149 4.149 10 C -0.366 4.366 11 S 0.518 5.482 12 C -0.352 4.352 13 C -0.052 4.052 14 C -0.032 4.032 15 H 0.137 0.863 16 N -0.297 5.297 17 C -0.070 4.070 18 C 0.223 3.777 19 O -0.513 6.513 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.192 1.192 28 H -0.195 1.195 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.152 0.848 35 H 0.210 0.790 36 H 0.219 0.781 37 H 0.120 0.880 38 H 0.069 0.931 39 H 0.153 0.847 40 H 0.078 0.922 41 H 0.133 0.867 42 H 0.231 0.769 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.394 -2.754 28.493 30.810 hybrid contribution 2.147 -1.337 -2.615 3.638 sum -9.247 -4.091 25.879 27.784 Atomic orbital electron populations 1.21752 0.91216 1.03212 1.02901 1.22136 0.97906 0.99409 0.91814 0.90662 1.23302 0.85660 0.96500 0.97710 1.48901 1.13166 1.55110 1.17485 1.17774 0.80204 0.79293 0.85103 1.90783 1.44602 1.43343 1.68869 1.20108 0.94441 1.09692 0.95627 1.21147 0.96665 1.00911 0.96137 1.25852 1.03120 1.07900 0.99737 1.82830 0.96047 1.56474 1.12853 1.26424 1.04838 1.04024 0.99964 1.23243 0.99171 0.99371 0.83423 1.22897 0.95481 0.90118 0.94726 0.86274 1.60312 1.18175 1.50411 1.00813 1.21619 1.00252 0.95172 0.89909 1.20904 0.85740 0.88160 0.82899 1.90489 1.56323 1.33238 1.71201 1.41921 1.43684 1.26491 1.08808 1.19623 1.25609 1.08323 0.93060 0.90509 1.26055 0.99218 0.98604 0.97342 1.69661 1.44687 1.27804 1.13844 0.84989 0.78101 0.78083 0.77165 1.19928 1.19213 1.19510 0.90702 0.90599 0.92639 0.88102 0.87106 0.84803 0.78954 0.78071 0.88038 0.93132 0.84659 0.92244 0.86689 0.76908 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.92 71.98 0.64 -0.79 16 2 C -0.09 -1.55 3.45 -9.89 -0.03 -1.59 16 3 H 0.07 1.64 7.95 -2.39 -0.02 1.62 16 4 C 0.09 1.25 5.10 86.48 0.44 1.69 16 5 N -0.61 -14.47 3.33 -811.29 -2.70 -17.17 16 6 C 0.59 17.65 7.80 86.59 0.68 18.33 16 7 O -0.59 -23.74 17.19 -4.15 -0.07 -23.81 16 8 C -0.18 -4.22 5.84 -19.87 -0.12 -4.33 16 9 C -0.12 -2.69 10.20 22.67 0.23 -2.46 16 10 C -0.23 -3.42 11.12 66.64 0.74 -2.68 16 11 S 0.25 2.62 23.02 -56.49 -1.30 1.32 16 12 C -0.21 -3.12 8.95 67.30 0.60 -2.52 16 13 C 0.07 1.70 6.42 86.53 0.56 2.25 16 14 C 0.08 1.72 3.01 45.82 0.14 1.86 16 15 H 0.12 2.11 7.44 -2.39 -0.02 2.10 16 16 N -0.67 -21.80 5.78 -490.89 -2.84 -24.63 16 17 C 0.06 2.23 5.97 85.55 0.51 2.74 16 18 C 0.44 21.71 7.82 87.66 0.69 22.40 16 19 O -0.63 -36.49 15.78 -3.06 -0.05 -36.54 16 20 N -0.57 -30.49 5.29 -306.99 -1.62 -32.11 16 21 C -0.34 -19.80 9.68 84.04 0.81 -18.98 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -50.71 13.05 21.66 0.28 -50.43 16 25 Si 0.99 44.12 29.55 68.60 2.03 46.15 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 29 H 0.07 0.55 8.10 -2.38 -0.02 0.53 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 1.18 5.11 -2.38 -0.01 1.17 16 33 H 0.11 0.85 7.83 -2.39 -0.02 0.83 16 34 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.19 1.79 8.06 -2.91 -0.02 1.76 16 36 H 0.20 1.76 5.38 -2.91 -0.02 1.75 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.05 1.56 7.45 -2.39 -0.02 1.54 16 39 H 0.34 12.90 8.19 -89.69 -0.73 12.16 16 40 H 0.06 1.95 7.79 -2.39 -0.02 1.93 16 41 H 0.12 3.47 8.08 -2.39 -0.02 3.45 16 42 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 43 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -81.18 371.31 -0.32 -81.50 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: -0.40 Total: 40.03 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 6.35 Total: 15.70 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -6.88 Total: -124.35 kcal Atomic # 8 Polarization: -60.23 SS G_CDS: -0.12 Total: -60.35 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.30 Total: 1.32 kcal Total: -81.18 -0.32 -81.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502700921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.229 kcal (2) G-P(sol) polarization free energy of solvation -81.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds