Wall clock time and date at job start Tue Mar 31 2020 20:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.38026 * 2 1 4 4 C 1.54384 * 110.33985 * 237.77157 * 2 1 3 5 5 N 1.48147 * 104.61589 * 264.98964 * 4 2 1 6 6 C 1.34780 * 127.83495 * 140.41608 * 5 4 2 7 7 O 1.21633 * 120.00149 * 353.15007 * 6 5 4 8 8 C 1.47190 * 119.99634 * 173.14595 * 6 5 4 9 9 C 1.44420 * 123.46301 * 348.59480 * 8 6 5 10 10 C 1.32776 * 113.08336 * 179.80369 * 9 8 6 11 11 S 1.75500 * 110.57365 * 0.44475 * 10 9 8 12 12 C 1.36014 * 123.45709 * 168.88513 * 8 6 5 13 13 C 1.48146 * 104.32485 * 320.41849 * 5 4 2 14 14 C 1.54283 * 110.34273 * 122.23112 * 2 1 3 15 15 H 1.09000 * 110.34030 * 237.85089 * 14 2 1 16 16 N 1.46898 * 110.34541 * 0.02562 * 14 2 1 17 17 C 1.46903 * 111.00007 * 205.00018 * 16 14 2 18 18 C 1.50704 * 109.46873 * 180.02562 * 17 16 14 19 19 O 1.21286 * 120.00180 * 359.71859 * 18 17 16 20 20 N 1.34772 * 119.99596 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99682 * 179.72253 * 20 18 17 22 22 H 1.07998 * 120.00336 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99605 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00585 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99650 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47204 * 90.00165 * 25 23 21 27 27 H 1.48500 * 109.47093 * 209.99810 * 25 23 21 28 28 H 1.48503 * 109.47340 * 329.99594 * 25 23 21 29 29 H 1.08998 * 109.47395 * 297.76678 * 1 2 3 30 30 H 1.08997 * 109.47739 * 57.77030 * 1 2 3 31 31 H 1.09005 * 109.47075 * 177.76514 * 1 2 3 32 32 H 1.08996 * 110.41613 * 23.78004 * 4 2 1 33 33 H 1.09007 * 110.40789 * 146.21111 * 4 2 1 34 34 H 1.07995 * 123.45657 * 0.02562 * 9 8 6 35 35 H 1.07997 * 124.71396 * 180.21129 * 10 9 8 36 36 H 1.07997 * 124.59223 * 359.97438 * 12 8 6 37 37 H 1.08996 * 110.40648 * 280.79829 * 13 5 4 38 38 H 1.08998 * 110.40324 * 158.37268 * 13 5 4 39 39 H 1.00901 * 111.00103 * 81.03929 * 16 14 2 40 40 H 1.08995 * 109.46959 * 60.00279 * 17 16 14 41 41 H 1.08992 * 109.47131 * 299.99632 * 17 16 14 42 42 H 0.96995 * 120.00187 * 359.72280 * 20 18 17 43 43 H 0.96998 * 120.00258 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9096 1.0218 0.0000 4 6 2.0666 -0.7720 -1.2245 5 7 2.3140 -2.1437 -0.7227 6 6 2.0774 -3.3104 -1.3546 7 8 1.4913 -3.3169 -2.4204 8 6 2.5284 -4.5768 -0.7550 9 6 3.4287 -4.6481 0.3720 10 6 3.6953 -5.8935 0.7472 11 16 2.8564 -7.0408 -0.2823 12 6 2.1446 -5.8001 -1.2091 13 6 2.8802 -1.9421 0.6314 14 6 2.0664 -0.7715 1.2237 15 1 2.7080 -0.1282 1.8258 16 7 0.9525 -1.2828 2.0335 17 6 1.3634 -1.4783 3.4302 18 6 0.1974 -2.0029 4.2281 19 8 -0.8720 -2.1902 3.6876 20 7 0.3418 -2.2590 5.5433 21 6 -0.7205 -2.7309 6.2704 22 1 -1.6730 -2.8969 5.7893 23 6 -0.5717 -2.9945 7.6266 24 7 0.5868 -2.7911 8.2124 25 14 -2.0189 -3.6380 8.6170 26 1 -2.0214 -5.1226 8.5824 27 1 -1.9007 -3.1760 10.0234 28 1 -3.2850 -3.1271 8.0329 29 1 -0.3634 0.4787 0.9093 30 1 -0.3634 0.5480 -0.8693 31 1 -0.3633 -1.0269 -0.0401 32 1 1.3223 -0.7870 -2.0206 33 1 2.9949 -0.3240 -1.5794 34 1 3.8398 -3.7777 0.8616 35 1 4.3418 -6.1631 1.5692 36 1 1.4790 -5.9631 -2.0438 37 1 3.9354 -1.6769 0.5664 38 1 2.7496 -2.8399 1.2354 39 1 0.5830 -2.1364 1.6423 40 1 1.6919 -0.5271 3.8488 41 1 2.1830 -2.1956 3.4708 42 1 1.1972 -2.1096 5.9755 43 1 0.6907 -2.9754 9.1590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502700922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:31 Heat of formation + Delta-G solvation = -13.327530 kcal Electronic energy + Delta-G solvation = -27008.876516 eV Core-core repulsion = 23181.453155 eV Total energy + Delta-G solvation = -3827.423361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.57219 -38.66335 -37.89639 -36.92068 -34.53041 -33.75942 -32.43471 -31.22773 -30.02640 -28.92609 -27.31318 -26.13775 -24.49942 -24.15209 -23.03688 -20.78141 -19.73900 -19.47322 -19.18068 -18.13803 -17.91935 -16.63603 -16.38794 -16.15349 -15.70561 -15.09417 -14.73763 -14.53448 -14.45168 -14.17627 -13.89981 -13.65093 -13.44181 -13.20126 -12.97664 -12.92602 -12.70332 -12.43133 -12.30827 -12.05039 -11.77096 -11.69727 -11.53621 -11.19721 -11.11051 -11.00518 -10.77470 -10.59309 -10.40716 -10.23522 -10.06411 -9.52773 -9.28050 -8.96940 -8.66030 -8.45934 -8.05324 -7.97400 -6.43817 -3.84435 0.61451 1.32220 1.66982 1.78089 2.84694 3.16456 3.19959 3.25424 3.31519 3.88430 4.04910 4.26896 4.28521 4.42999 4.54499 4.72571 4.94420 5.02277 5.07820 5.11551 5.21508 5.22633 5.26199 5.30418 5.43180 5.54180 5.57123 5.67771 5.72940 5.80957 5.87687 5.92355 5.96561 6.05529 6.16534 6.25616 6.34791 6.69776 7.19152 7.36828 7.53526 7.57768 8.03378 8.04484 8.59247 9.16290 9.52173 10.03749 10.73897 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010323 B = 0.003320 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.867204 B = 8432.523162 C =10266.005057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.095 4.095 3 H 0.086 0.914 4 C 0.107 3.893 5 N -0.612 5.612 6 C 0.602 3.398 7 O -0.542 6.542 8 C -0.160 4.160 9 C -0.127 4.127 10 C -0.229 4.229 11 S 0.188 5.812 12 C -0.180 4.180 13 C 0.052 3.948 14 C 0.076 3.924 15 H 0.096 0.904 16 N -0.651 5.651 17 C 0.047 3.953 18 C 0.440 3.560 19 O -0.581 6.581 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.352 0.648 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.392 0.608 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.922 -1.045 -15.366 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.115 4.115 3 H 0.104 0.896 4 C -0.016 4.016 5 N -0.346 5.346 6 C 0.391 3.609 7 O -0.420 6.420 8 C -0.178 4.178 9 C -0.155 4.155 10 C -0.364 4.364 11 S 0.453 5.547 12 C -0.319 4.319 13 C -0.072 4.072 14 C -0.036 4.036 15 H 0.114 0.886 16 N -0.283 5.283 17 C -0.085 4.085 18 C 0.225 3.775 19 O -0.465 6.465 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.178 0.822 35 H 0.188 0.812 36 H 0.193 0.807 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.173 0.827 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.225 0.775 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.570 -2.271 -16.058 19.358 hybrid contribution 0.607 0.551 0.982 1.279 sum 11.176 -1.721 -15.075 18.845 Atomic orbital electron populations 1.21493 0.92851 1.02307 1.01331 1.22171 0.98228 0.98522 0.92605 0.89555 1.22515 1.00794 0.80625 0.97623 1.48628 1.63134 1.05468 1.17330 1.17164 0.78319 0.81671 0.83743 1.90789 1.41969 1.86650 1.22620 1.20163 1.04153 0.93383 1.00082 1.21827 0.98927 0.98416 0.96346 1.25584 1.07995 0.96415 1.06416 1.83112 1.40239 1.08589 1.22769 1.25588 1.04789 0.96503 1.04992 1.23770 0.98376 1.00818 0.84269 1.22637 0.91542 0.94936 0.94493 0.88606 1.60256 1.29915 1.37468 1.00668 1.21760 0.96317 1.00823 0.89607 1.19795 0.89653 0.84807 0.83217 1.90539 1.28248 1.57357 1.70378 1.41853 1.13662 1.57578 1.06929 1.19699 0.92716 1.39599 0.90814 0.87963 1.25241 0.97896 0.97713 0.96991 1.69605 1.23525 1.48962 1.12284 0.85875 0.81112 0.78911 0.78516 1.20432 1.20914 1.19389 0.90872 0.94070 0.92620 0.89605 0.91204 0.82158 0.81194 0.80744 0.90413 0.88736 0.82708 0.89409 0.94041 0.77511 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 8.10 37.16 0.30 -1.24 16 2 C -0.10 -0.97 3.66 -89.22 -0.33 -1.30 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.11 1.12 6.62 -2.41 -0.02 1.10 16 5 N -0.61 -7.28 3.32 -170.66 -0.57 -7.84 16 6 C 0.60 8.64 7.85 -12.62 -0.10 8.54 16 7 O -0.54 -9.43 17.02 5.25 0.09 -9.34 16 8 C -0.16 -2.02 5.91 -104.63 -0.62 -2.64 16 9 C -0.13 -1.33 8.64 -39.02 -0.34 -1.66 16 10 C -0.23 -2.14 11.12 28.86 0.32 -1.82 16 11 S 0.19 1.71 23.02 -107.50 -2.47 -0.77 16 12 C -0.18 -2.07 10.53 29.93 0.32 -1.75 16 13 C 0.05 0.51 4.75 -2.41 -0.01 0.50 16 14 C 0.08 0.81 3.37 -66.32 -0.22 0.59 16 15 H 0.10 0.88 7.82 -51.93 -0.41 0.47 16 16 N -0.65 -9.67 4.10 -106.52 -0.44 -10.10 16 17 C 0.05 0.77 6.02 -4.97 -0.03 0.74 16 18 C 0.44 10.03 7.82 -10.99 -0.09 9.94 16 19 O -0.58 -15.54 15.78 5.55 0.09 -15.46 16 20 N -0.56 -13.88 5.29 -10.96 -0.06 -13.94 16 21 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 25 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.07 1.04 7.84 -51.93 -0.41 0.64 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.83 7.57 -51.93 -0.39 0.44 16 32 H 0.09 1.01 7.56 -51.93 -0.39 0.62 16 33 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.16 1.42 4.78 -52.49 -0.25 1.16 16 35 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.18 1.91 8.04 -52.49 -0.42 1.49 16 37 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.09 0.98 4.93 -51.93 -0.26 0.73 16 39 H 0.35 5.93 7.74 -39.29 -0.30 5.62 16 40 H 0.09 1.28 8.07 -51.93 -0.42 0.87 16 41 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 42 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -33.18 368.44 -8.77 -41.95 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -5.62 Total: 14.33 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.05 Total: 3.15 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.34 Total: -55.27 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: 0.18 Total: -24.79 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.47 Total: -0.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.18 -8.77 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502700922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.627 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds