Wall clock time and date at job start Tue Mar 31 2020 20:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.87505 * 2 1 4 4 C 1.54319 * 109.88260 * 238.97840 * 2 1 3 5 5 C 1.55156 * 102.94478 * 262.77510 * 4 2 1 6 6 H 1.09008 * 111.00325 * 82.57034 * 5 4 2 7 7 N 1.46901 * 111.00467 * 206.42131 * 5 4 2 8 8 C 1.46900 * 110.99872 * 205.00049 * 7 5 4 9 9 C 1.50701 * 109.47101 * 180.02562 * 8 7 5 10 10 O 1.21288 * 119.99756 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00170 * 180.02562 * 9 8 7 12 12 C 1.37092 * 120.00087 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99772 * 359.97438 * 12 11 9 14 14 C 1.38951 * 119.99997 * 179.97438 * 12 11 9 15 15 N 1.31414 * 120.00130 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00164 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47139 * 89.99762 * 16 14 12 18 18 H 1.48497 * 109.47488 * 210.00133 * 16 14 12 19 19 H 1.48504 * 109.46804 * 329.99976 * 16 14 12 20 20 C 1.54903 * 101.58366 * 324.49992 * 5 4 2 21 21 N 1.47027 * 109.88203 * 121.17086 * 2 1 3 22 22 C 1.34776 * 125.64642 * 300.45736 * 21 2 1 23 23 O 1.21699 * 120.00292 * 356.41929 * 22 21 2 24 24 C 1.46585 * 119.99416 * 176.42296 * 22 21 2 25 25 C 1.36654 * 125.45806 * 186.59890 * 24 22 21 26 26 C 1.37469 * 113.30169 * 179.97438 * 25 24 22 27 27 C 1.33814 * 115.09810 * 0.02562 * 26 25 24 28 28 S 1.70614 * 110.95792 * 359.76041 * 27 26 25 29 29 H 1.08998 * 109.47249 * 181.02056 * 1 2 3 30 30 H 1.08996 * 109.47000 * 61.01537 * 1 2 3 31 31 H 1.09003 * 109.46993 * 301.01721 * 1 2 3 32 32 H 1.09004 * 110.72202 * 21.14049 * 4 2 1 33 33 H 1.09000 * 110.72104 * 144.23452 * 4 2 1 34 34 H 1.00905 * 110.99530 * 81.05258 * 7 5 4 35 35 H 1.09008 * 109.47250 * 300.00325 * 8 7 5 36 36 H 1.08996 * 109.47404 * 60.00194 * 8 7 5 37 37 H 0.97005 * 119.99755 * 359.97438 * 11 9 8 38 38 H 0.97002 * 119.99864 * 180.02562 * 15 14 12 39 39 H 1.08995 * 110.37204 * 155.84100 * 20 5 4 40 40 H 1.08999 * 110.37024 * 278.06244 * 20 5 4 41 41 H 1.08002 * 123.34806 * 359.93936 * 25 24 22 42 42 H 1.08004 * 122.44951 * 179.97438 * 26 25 24 43 43 H 1.08000 * 124.52328 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2436 5 6 2.3519 -2.1686 -0.6952 6 1 1.4451 -2.7728 -0.6640 7 7 3.3965 -2.8311 -1.4876 8 6 3.2808 -4.2925 -1.3941 9 6 4.3668 -4.9361 -2.2172 10 8 5.1589 -4.2452 -2.8225 11 7 4.4572 -6.2793 -2.2816 12 6 5.4449 -6.8647 -3.0308 13 1 6.1502 -6.2495 -3.5697 14 6 5.5384 -8.2495 -3.0967 15 7 6.4854 -8.8107 -3.8144 16 14 4.3180 -9.3135 -2.1651 17 1 3.1474 -9.5996 -3.0328 18 1 4.9698 -10.5899 -1.7764 19 1 3.8666 -8.5967 -0.9453 20 6 2.8568 -1.8508 0.7343 21 7 2.0300 -0.7156 1.1830 22 6 1.7751 -0.3879 2.4652 23 8 1.1304 0.6121 2.7211 24 6 2.2744 -1.2360 3.5516 25 6 1.9776 -1.0834 4.8767 26 6 2.5824 -2.0202 5.6808 27 6 3.3487 -2.9096 5.0386 28 16 3.3462 -2.6163 3.3578 29 1 -0.3633 -1.0275 0.0183 30 1 -0.3633 0.4980 -0.8989 31 1 -0.3633 0.5296 0.8808 32 1 1.2918 -0.7864 -2.0211 33 1 2.9639 -0.2792 -1.6204 34 1 4.3148 -2.5223 -1.2054 35 1 3.3841 -4.5994 -0.3532 36 1 2.3064 -4.6046 -1.7699 37 1 3.8235 -6.8318 -1.7978 38 1 6.5505 -9.7774 -3.8607 39 1 2.7087 -2.7098 1.3887 40 1 3.9096 -1.5696 0.7111 41 1 1.3326 -0.3041 5.2548 42 1 2.4494 -2.0366 6.7525 43 1 3.8924 -3.7093 5.5195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507301089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:52 Heat of formation + Delta-G solvation = -19.416902 kcal Electronic energy + Delta-G solvation = -26452.961597 eV Core-core repulsion = 22625.274181 eV Total energy + Delta-G solvation = -3827.687416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.63948 -38.82313 -38.26002 -37.33287 -34.98623 -33.91372 -32.57786 -31.72641 -30.14570 -29.77811 -26.59466 -26.23556 -25.32478 -23.90191 -22.81505 -21.49749 -20.07098 -19.50002 -19.32660 -18.44903 -18.31867 -16.74481 -16.47721 -16.01233 -15.75851 -15.63461 -15.09915 -14.87881 -14.73695 -14.13509 -13.81506 -13.68174 -13.46762 -13.23952 -13.18044 -13.09189 -13.02819 -12.78443 -12.52888 -12.45845 -12.19822 -12.18738 -11.93040 -11.76573 -11.22410 -11.17181 -10.92708 -10.84065 -10.64311 -10.26352 -10.02403 -9.62804 -9.30279 -9.02539 -8.83388 -8.68726 -8.32001 -8.23026 -6.35913 -3.87697 0.20428 1.16763 1.59903 2.08342 2.53706 2.91999 2.97430 3.02787 3.11393 3.66096 3.82190 4.05444 4.17122 4.22303 4.49890 4.69670 4.75123 4.78348 4.79643 4.94974 5.00212 5.07939 5.15017 5.15868 5.23537 5.36002 5.42418 5.51234 5.58949 5.68146 5.69171 5.77105 5.82121 5.86793 5.89051 5.98599 6.02851 6.16154 6.90542 7.11578 7.36985 7.52316 7.80883 8.08931 8.53802 8.89700 9.36832 9.75928 10.77082 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.002943 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.989764 B = 9513.406984 C =11095.522163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 H 0.080 0.920 4 C -0.116 4.116 5 C 0.084 3.916 6 H 0.096 0.904 7 N -0.650 5.650 8 C 0.044 3.956 9 C 0.449 3.551 10 O -0.564 6.564 11 N -0.589 5.589 12 C -0.306 4.306 13 H 0.120 0.880 14 C 0.042 3.958 15 N -0.880 5.880 16 Si 0.879 3.121 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.270 1.270 20 C 0.057 3.943 21 N -0.608 5.608 22 C 0.607 3.393 23 O -0.530 6.530 24 C -0.271 4.271 25 C -0.055 4.055 26 C -0.153 4.153 27 C -0.248 4.248 28 S 0.223 5.777 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.355 0.645 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.370 0.630 38 H 0.274 0.726 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.152 0.848 42 H 0.142 0.858 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.827 12.689 16.655 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 H 0.098 0.902 4 C -0.155 4.155 5 C -0.028 4.028 6 H 0.114 0.886 7 N -0.282 5.282 8 C -0.089 4.089 9 C 0.234 3.766 10 O -0.446 6.446 11 N -0.228 5.228 12 C -0.435 4.435 13 H 0.138 0.862 14 C -0.161 4.161 15 N -0.520 5.520 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.070 4.070 21 N -0.342 5.342 22 C 0.396 3.604 23 O -0.408 6.408 24 C -0.391 4.391 25 C -0.088 4.088 26 C -0.184 4.184 27 C -0.385 4.385 28 S 0.491 5.509 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.176 0.824 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.170 0.830 42 H 0.160 0.840 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.150 12.815 14.552 22.368 hybrid contribution -1.092 -0.817 3.115 3.401 sum -12.242 11.998 17.668 24.616 Atomic orbital electron populations 1.22157 0.94431 1.02483 1.03056 1.21657 0.94912 0.96487 0.83612 0.90172 1.22761 1.02815 0.94039 0.95858 1.22779 0.96201 0.96023 0.87802 0.88555 1.60132 1.07141 1.04750 1.56156 1.21820 1.00164 0.88344 0.98523 1.19637 0.87806 0.82634 0.86514 1.90577 1.44117 1.61974 1.47912 1.42200 1.29817 1.05417 1.45379 1.19429 1.08127 0.91033 1.24873 0.86232 1.25045 0.97151 0.96550 0.97364 1.69621 1.31808 1.11282 1.39263 0.86679 0.81598 0.81099 0.80040 1.19555 1.20174 1.19525 1.23521 0.96206 0.88989 0.98314 1.48292 1.50600 1.30345 1.04913 1.16570 0.79470 0.84061 0.80308 1.90815 1.40847 1.26237 1.82925 1.24598 1.11239 1.05159 0.98101 1.20769 0.98549 0.98856 0.90671 1.20024 1.00314 0.96339 1.01691 1.25819 1.05684 1.05382 1.01626 1.83652 1.42618 1.22668 1.01971 0.92402 0.91273 0.91293 0.89024 0.89479 0.82351 0.93508 0.89142 0.79682 0.91558 0.90338 0.89944 0.83024 0.83992 0.81585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.05 37.16 0.34 -1.16 16 2 C 0.14 1.31 3.48 -66.95 -0.23 1.08 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.12 -1.05 6.19 -24.90 -0.15 -1.20 16 5 C 0.08 0.83 3.38 -65.57 -0.22 0.61 16 6 H 0.10 0.90 7.83 -51.92 -0.41 0.50 16 7 N -0.65 -8.54 6.04 -105.72 -0.64 -9.18 16 8 C 0.04 0.64 6.03 -4.98 -0.03 0.61 16 9 C 0.45 9.47 7.82 -10.99 -0.09 9.38 16 10 O -0.56 -14.32 15.78 5.55 0.09 -14.23 16 11 N -0.59 -13.29 5.09 -10.97 -0.06 -13.35 16 12 C -0.31 -8.37 10.16 -14.94 -0.15 -8.52 16 13 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 14 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 15 N -0.88 -25.15 13.96 55.50 0.77 -24.37 16 16 Si 0.88 18.69 27.74 -169.99 -4.71 13.97 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.27 -5.15 6.52 56.52 0.37 -4.78 16 20 C 0.06 0.54 5.21 -2.53 -0.01 0.53 16 21 N -0.61 -6.51 3.08 -164.58 -0.51 -7.02 16 22 C 0.61 7.61 7.56 -12.89 -0.10 7.51 16 23 O -0.53 -8.01 15.89 5.19 0.08 -7.93 16 24 C -0.27 -2.96 6.37 -36.79 -0.23 -3.19 16 25 C -0.05 -0.54 10.02 -40.43 -0.41 -0.94 16 26 C -0.15 -1.26 10.15 -41.41 -0.42 -1.68 16 27 C -0.25 -2.01 10.92 29.18 0.32 -1.69 16 28 S 0.22 1.99 18.55 -107.50 -1.99 0.00 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.76 6.88 -51.93 -0.36 0.41 16 32 H 0.09 0.76 7.83 -51.93 -0.41 0.35 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.36 4.83 7.89 -39.29 -0.31 4.52 16 35 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.09 1.16 8.09 -51.93 -0.42 0.74 16 37 H 0.37 7.28 5.76 -40.82 -0.24 7.04 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.08 0.72 4.90 -28.01 -0.14 0.58 16 40 H 0.08 0.77 7.75 -51.93 -0.40 0.37 16 41 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 43 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -33.39 366.18 -8.55 -41.94 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -5.61 Total: 12.29 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.49 Total: 2.37 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.43 Total: -53.92 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.17 Total: -22.16 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.71 Total: 13.97 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.99 Total: 0.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.39 -8.55 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507301089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.521 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds