Wall clock time and date at job start Tue Mar 31 2020 20:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.87578 * 2 1 4 4 C 1.54329 * 109.87916 * 238.83513 * 2 1 3 5 5 C 1.55165 * 102.94126 * 218.38688 * 4 2 1 6 6 H 1.09006 * 111.00109 * 277.42779 * 5 4 2 7 7 N 1.46898 * 111.03917 * 153.58708 * 5 4 2 8 8 C 1.46895 * 110.99831 * 161.32975 * 7 5 4 9 9 C 1.50707 * 109.46973 * 180.02562 * 8 7 5 10 10 O 1.21292 * 119.99939 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99887 * 180.02562 * 9 8 7 12 12 C 1.37094 * 119.99869 * 180.02562 * 11 9 8 13 13 H 1.08004 * 120.00333 * 359.97438 * 12 11 9 14 14 C 1.38950 * 120.00076 * 180.02562 * 12 11 9 15 15 N 1.31414 * 119.99803 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99969 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46951 * 90.00248 * 16 14 12 18 18 H 1.48503 * 109.46849 * 210.00511 * 16 14 12 19 19 H 1.48495 * 109.46862 * 330.00349 * 16 14 12 20 20 C 1.54910 * 101.58064 * 35.49950 * 5 4 2 21 21 N 1.47016 * 109.88942 * 121.02430 * 2 1 3 22 22 C 1.34780 * 125.64360 * 298.39433 * 21 2 1 23 23 O 1.21702 * 120.00166 * 354.39292 * 22 21 2 24 24 C 1.46589 * 119.99531 * 174.39241 * 22 21 2 25 25 C 1.36646 * 125.45255 * 173.78366 * 24 22 21 26 26 C 1.37475 * 113.29499 * 179.97438 * 25 24 22 27 27 C 1.33813 * 115.10102 * 0.02562 * 26 25 24 28 28 S 1.70615 * 110.95377 * 359.75907 * 27 26 25 29 29 H 1.09007 * 109.46629 * 300.43098 * 1 2 3 30 30 H 1.08999 * 109.47277 * 60.43175 * 1 2 3 31 31 H 1.09002 * 109.46714 * 180.43780 * 1 2 3 32 32 H 1.08997 * 110.71892 * 336.74249 * 4 2 1 33 33 H 1.08996 * 110.72392 * 100.02530 * 4 2 1 34 34 H 1.00901 * 111.00036 * 285.28841 * 7 5 4 35 35 H 1.08996 * 109.47568 * 300.00270 * 8 7 5 36 36 H 1.08998 * 109.46918 * 60.00252 * 8 7 5 37 37 H 0.96999 * 119.99673 * 359.97438 * 11 9 8 38 38 H 0.97001 * 119.99737 * 179.97438 * 15 14 12 39 39 H 1.08995 * 110.36595 * 204.15682 * 20 5 4 40 40 H 1.09000 * 110.45961 * 81.87488 * 20 5 4 41 41 H 1.08002 * 123.35534 * 359.94246 * 25 24 22 42 42 H 1.08005 * 122.45075 * 179.97438 * 26 25 24 43 43 H 1.08000 * 124.52403 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7511 -1.2419 5 6 3.2876 -1.5151 -0.6906 6 1 4.1655 -0.8696 -0.6595 7 7 3.5547 -2.7247 -1.4802 8 6 4.9277 -3.2009 -1.2656 9 6 5.1644 -4.4398 -2.0904 10 8 4.2765 -4.8828 -2.7879 11 7 6.3624 -5.0561 -2.0521 12 6 6.5779 -6.1828 -2.8028 13 1 5.7875 -6.5769 -3.4246 14 6 7.8128 -6.8186 -2.7630 15 7 8.0191 -7.8989 -3.4822 16 14 9.1796 -6.1376 -1.6871 17 1 9.0989 -6.7508 -0.3371 18 1 10.4953 -6.4560 -2.2977 19 1 9.0310 -4.6646 -1.5714 20 6 2.8146 -1.8785 0.7390 21 7 2.0301 -0.7125 1.1847 22 6 1.8076 -0.3588 2.4661 23 8 1.2289 0.6817 2.7184 24 6 2.2625 -1.2275 3.5557 25 6 2.2048 -0.9252 4.8871 26 6 2.7003 -1.9226 5.6930 27 6 3.1492 -3.0046 5.0462 28 16 2.9640 -2.8277 3.3594 29 1 -0.3633 0.5206 0.8862 30 1 -0.3634 0.5071 -0.8938 31 1 -0.3633 -1.0277 0.0079 32 1 1.3051 -1.4480 -1.6164 33 1 2.3528 -0.0486 -2.0201 34 1 2.8840 -3.4488 -1.2706 35 1 5.6324 -2.4252 -1.5654 36 1 5.0708 -3.4336 -0.2104 37 1 7.0723 -4.7020 -1.4940 38 1 8.8813 -8.3425 -3.4547 39 1 3.6718 -2.0320 1.3946 40 1 2.1892 -2.7709 0.7181 41 1 1.8097 0.0049 5.2682 42 1 2.7262 -1.8386 6.7695 43 1 3.5685 -3.8755 5.5279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507301091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:55 Heat of formation + Delta-G solvation = -21.119944 kcal Electronic energy + Delta-G solvation = -26444.569300 eV Core-core repulsion = 22616.808034 eV Total energy + Delta-G solvation = -3827.761266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.61157 -38.81808 -38.25009 -37.33194 -34.99630 -33.91500 -32.52964 -31.72482 -30.22267 -29.77374 -26.61223 -26.24113 -25.28985 -23.90232 -22.67941 -21.37575 -20.21769 -19.47637 -19.33889 -18.44811 -18.23275 -17.05127 -16.34012 -16.09204 -15.74671 -15.50702 -14.95156 -14.85972 -14.62411 -14.39179 -13.93357 -13.60062 -13.46611 -13.28637 -13.10758 -13.03059 -12.90752 -12.67334 -12.64551 -12.43515 -12.22647 -12.19692 -11.84949 -11.71604 -11.23743 -11.16778 -11.01344 -10.91599 -10.64013 -10.28049 -10.02154 -9.62584 -9.30190 -9.01837 -8.82221 -8.68785 -8.31841 -8.22704 -6.35746 -3.87520 0.20197 1.17149 1.60517 2.07795 2.55333 2.92017 2.98522 3.02306 3.11596 3.66661 3.82127 4.05674 4.16466 4.26190 4.52925 4.69694 4.72644 4.77237 4.84596 4.95700 4.99057 5.09028 5.14723 5.16395 5.22925 5.37437 5.40437 5.51635 5.58760 5.67437 5.72057 5.75628 5.82516 5.84075 5.91733 5.99088 6.03717 6.14113 6.90742 7.12986 7.37640 7.52556 7.81499 8.09090 8.54029 8.89879 9.37039 9.76171 10.77256 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.002985 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.523485 B = 9377.122392 C =11085.015334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.136 3.864 3 H 0.080 0.920 4 C -0.116 4.116 5 C 0.084 3.916 6 H 0.098 0.902 7 N -0.650 5.650 8 C 0.044 3.956 9 C 0.449 3.551 10 O -0.564 6.564 11 N -0.589 5.589 12 C -0.306 4.306 13 H 0.120 0.880 14 C 0.042 3.958 15 N -0.880 5.880 16 Si 0.879 3.121 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.269 1.269 20 C 0.052 3.948 21 N -0.608 5.608 22 C 0.607 3.393 23 O -0.530 6.530 24 C -0.271 4.271 25 C -0.056 4.056 26 C -0.153 4.153 27 C -0.245 4.245 28 S 0.223 5.777 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.355 0.645 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.371 0.629 38 H 0.274 0.726 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.152 0.848 42 H 0.143 0.857 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.309 14.754 16.299 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 H 0.098 0.902 4 C -0.155 4.155 5 C -0.028 4.028 6 H 0.116 0.884 7 N -0.281 5.281 8 C -0.089 4.089 9 C 0.234 3.766 10 O -0.446 6.446 11 N -0.228 5.228 12 C -0.435 4.435 13 H 0.138 0.862 14 C -0.161 4.161 15 N -0.520 5.520 16 Si 0.705 3.295 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.194 1.194 20 C -0.075 4.075 21 N -0.342 5.342 22 C 0.396 3.604 23 O -0.409 6.409 24 C -0.391 4.391 25 C -0.090 4.090 26 C -0.184 4.184 27 C -0.382 4.382 28 S 0.491 5.509 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.176 0.824 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.170 0.830 42 H 0.161 0.839 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.584 14.221 14.140 22.227 hybrid contribution 1.033 0.665 3.220 3.447 sum -8.550 14.885 17.360 24.414 Atomic orbital electron populations 1.22140 0.94426 1.02516 1.02971 1.21662 0.94865 0.96553 0.83577 0.90160 1.22773 0.97347 0.99462 0.95894 1.22793 0.98607 0.93625 0.87786 0.88373 1.60125 1.03757 1.07611 1.56623 1.21804 0.91340 0.97647 0.98067 1.19641 0.83829 0.86279 0.86834 1.90578 1.43428 1.66877 1.43710 1.42200 1.11857 1.26463 1.42293 1.19430 1.00489 1.00936 1.22603 0.86234 1.25045 0.97494 0.96067 0.97500 1.69621 1.24532 1.18322 1.39504 0.86682 0.82600 0.79101 0.81076 1.19643 1.20136 1.19438 1.23502 0.95764 0.89432 0.98798 1.48299 1.52482 1.28530 1.04883 1.16564 0.78955 0.84533 0.80352 1.90817 1.42927 1.24074 1.83073 1.24613 1.15601 1.00973 0.97916 1.20773 0.97242 1.00304 0.90640 1.20031 1.03144 0.93494 1.01690 1.25708 1.07321 1.04088 1.01095 1.83615 1.54994 1.10369 1.01916 0.91498 0.91211 0.92311 0.89406 0.89099 0.82390 0.89149 0.93486 0.79680 0.91562 0.90024 0.90276 0.83021 0.83931 0.81495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.11 37.16 0.34 -1.18 16 2 C 0.14 1.31 3.43 -66.95 -0.23 1.08 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.12 -1.04 6.18 -24.89 -0.15 -1.20 16 5 C 0.08 0.84 3.32 -65.56 -0.22 0.62 16 6 H 0.10 0.93 7.92 -51.93 -0.41 0.52 16 7 N -0.65 -8.56 6.00 -105.72 -0.63 -9.19 16 8 C 0.04 0.64 6.04 -4.98 -0.03 0.61 16 9 C 0.45 9.48 7.82 -10.98 -0.09 9.40 16 10 O -0.56 -14.33 15.78 5.55 0.09 -14.24 16 11 N -0.59 -13.30 5.09 -10.96 -0.06 -13.36 16 12 C -0.31 -8.37 10.16 -14.93 -0.15 -8.52 16 13 H 0.12 3.76 7.39 -52.48 -0.39 3.37 16 14 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 15 N -0.88 -25.16 13.96 55.50 0.77 -24.39 16 16 Si 0.88 18.71 27.74 -169.99 -4.71 13.99 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 20 C 0.05 0.49 4.85 -2.53 -0.01 0.48 16 21 N -0.61 -6.52 3.07 -164.57 -0.50 -7.03 16 22 C 0.61 7.62 7.55 -12.89 -0.10 7.53 16 23 O -0.53 -8.06 16.10 5.19 0.08 -7.98 16 24 C -0.27 -2.96 6.34 -36.79 -0.23 -3.19 16 25 C -0.06 -0.55 10.02 -40.43 -0.41 -0.95 16 26 C -0.15 -1.25 10.15 -41.41 -0.42 -1.67 16 27 C -0.24 -1.97 10.92 29.18 0.32 -1.66 16 28 S 0.22 1.99 18.68 -107.50 -2.01 -0.01 16 29 H 0.07 0.74 7.07 -51.93 -0.37 0.38 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.81 7.85 -51.93 -0.41 0.41 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.36 4.84 8.01 -39.29 -0.31 4.53 16 35 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.37 7.29 5.76 -40.82 -0.24 7.06 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.08 0.75 5.78 -39.41 -0.23 0.52 16 40 H 0.08 0.74 7.60 -51.93 -0.39 0.35 16 41 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 43 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -33.44 367.18 -8.63 -42.07 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -5.72 Total: 12.23 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.48 Total: 2.37 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.42 Total: -53.97 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.17 Total: -22.22 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.71 Total: 13.99 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.01 Total: -0.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.44 -8.63 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507301091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.948 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds