Wall clock time and date at job start Tue Mar 31 2020 20:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.87578 * 2 1 4 4 C 1.54329 * 109.87916 * 238.83513 * 2 1 3 5 5 C 1.55165 * 102.94126 * 218.38688 * 4 2 1 6 6 H 1.09006 * 111.00109 * 277.42779 * 5 4 2 7 7 N 1.46898 * 111.03917 * 153.58708 * 5 4 2 8 8 C 1.46895 * 110.99831 * 161.32975 * 7 5 4 9 9 C 1.50707 * 109.46973 * 180.02562 * 8 7 5 10 10 O 1.21292 * 119.99939 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99887 * 180.02562 * 9 8 7 12 12 C 1.37094 * 119.99869 * 180.02562 * 11 9 8 13 13 H 1.08004 * 120.00333 * 359.97438 * 12 11 9 14 14 C 1.38950 * 120.00076 * 180.02562 * 12 11 9 15 15 N 1.31414 * 119.99803 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99969 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46951 * 90.00248 * 16 14 12 18 18 H 1.48503 * 109.46849 * 210.00511 * 16 14 12 19 19 H 1.48495 * 109.46862 * 330.00349 * 16 14 12 20 20 C 1.54910 * 101.58064 * 35.49950 * 5 4 2 21 21 N 1.47016 * 109.88942 * 121.02430 * 2 1 3 22 22 C 1.34780 * 125.64360 * 298.39433 * 21 2 1 23 23 O 1.21702 * 120.00166 * 354.39292 * 22 21 2 24 24 C 1.46589 * 119.99531 * 174.39241 * 22 21 2 25 25 C 1.36646 * 125.45255 * 173.78366 * 24 22 21 26 26 C 1.37475 * 113.29499 * 179.97438 * 25 24 22 27 27 C 1.33813 * 115.10102 * 0.02562 * 26 25 24 28 28 S 1.70615 * 110.95377 * 359.75907 * 27 26 25 29 29 H 1.09007 * 109.46629 * 300.43098 * 1 2 3 30 30 H 1.08999 * 109.47277 * 60.43175 * 1 2 3 31 31 H 1.09002 * 109.46714 * 180.43780 * 1 2 3 32 32 H 1.08997 * 110.71892 * 336.74249 * 4 2 1 33 33 H 1.08996 * 110.72392 * 100.02530 * 4 2 1 34 34 H 1.00901 * 111.00036 * 285.28841 * 7 5 4 35 35 H 1.08996 * 109.47568 * 300.00270 * 8 7 5 36 36 H 1.08998 * 109.46918 * 60.00252 * 8 7 5 37 37 H 0.96999 * 119.99673 * 359.97438 * 11 9 8 38 38 H 0.97001 * 119.99737 * 179.97438 * 15 14 12 39 39 H 1.08995 * 110.36595 * 204.15682 * 20 5 4 40 40 H 1.09000 * 110.45961 * 81.87488 * 20 5 4 41 41 H 1.08002 * 123.35534 * 359.94246 * 25 24 22 42 42 H 1.08005 * 122.45075 * 179.97438 * 26 25 24 43 43 H 1.08000 * 124.52403 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7511 -1.2419 5 6 3.2876 -1.5151 -0.6906 6 1 4.1655 -0.8696 -0.6595 7 7 3.5547 -2.7247 -1.4802 8 6 4.9277 -3.2009 -1.2656 9 6 5.1644 -4.4398 -2.0904 10 8 4.2765 -4.8828 -2.7879 11 7 6.3624 -5.0561 -2.0521 12 6 6.5779 -6.1828 -2.8028 13 1 5.7875 -6.5769 -3.4246 14 6 7.8128 -6.8186 -2.7630 15 7 8.0191 -7.8989 -3.4822 16 14 9.1796 -6.1376 -1.6871 17 1 9.0989 -6.7508 -0.3371 18 1 10.4953 -6.4560 -2.2977 19 1 9.0310 -4.6646 -1.5714 20 6 2.8146 -1.8785 0.7390 21 7 2.0301 -0.7125 1.1847 22 6 1.8076 -0.3588 2.4661 23 8 1.2289 0.6817 2.7184 24 6 2.2625 -1.2275 3.5557 25 6 2.2048 -0.9252 4.8871 26 6 2.7003 -1.9226 5.6930 27 6 3.1492 -3.0046 5.0462 28 16 2.9640 -2.8277 3.3594 29 1 -0.3633 0.5206 0.8862 30 1 -0.3634 0.5071 -0.8938 31 1 -0.3633 -1.0277 0.0079 32 1 1.3051 -1.4480 -1.6164 33 1 2.3528 -0.0486 -2.0201 34 1 2.8840 -3.4488 -1.2706 35 1 5.6324 -2.4252 -1.5654 36 1 5.0708 -3.4336 -0.2104 37 1 7.0723 -4.7020 -1.4940 38 1 8.8813 -8.3425 -3.4547 39 1 3.6718 -2.0320 1.3946 40 1 2.1892 -2.7709 0.7181 41 1 1.8097 0.0049 5.2682 42 1 2.7262 -1.8386 6.7695 43 1 3.5685 -3.8755 5.5279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507301091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:54 Heat of formation + Delta-G solvation = -46.295258 kcal Electronic energy + Delta-G solvation = -26445.660984 eV Core-core repulsion = 22616.808034 eV Total energy + Delta-G solvation = -3828.852949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46884 -40.27073 -39.28883 -38.15960 -36.26445 -35.62895 -33.71062 -33.33242 -31.21958 -30.48108 -28.05746 -27.01520 -26.12104 -25.43149 -23.47738 -22.19217 -21.29491 -20.94479 -20.27203 -20.03976 -19.03157 -17.97539 -17.72609 -16.92445 -16.79885 -16.73257 -16.43174 -15.86509 -15.63024 -15.43620 -15.09284 -14.97671 -14.48193 -14.36248 -14.26256 -13.95841 -13.88291 -13.70356 -13.63620 -13.49107 -13.28365 -13.19158 -12.92687 -12.82529 -12.53051 -12.37997 -11.99735 -11.93387 -11.74744 -11.67125 -11.47264 -11.20858 -10.39849 -10.21307 -10.09996 -9.74770 -9.52687 -9.35263 -8.38015 -5.98695 -0.52130 0.47219 0.94348 1.33310 1.36770 1.38321 1.47467 1.73938 2.00447 2.08872 2.26103 2.69862 3.19022 3.22889 3.38970 3.61212 3.76644 3.96202 4.05462 4.12321 4.16936 4.22516 4.30584 4.35421 4.42080 4.50521 4.53267 4.58516 4.63737 4.71081 4.90695 4.97255 5.04911 5.12116 5.19371 5.26821 5.33452 5.38189 5.55926 5.91620 6.03659 6.26570 6.34913 6.62973 6.92263 6.92592 7.44074 8.00786 8.79646 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.002985 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.523485 B = 9377.122392 C =11085.015334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 H 0.080 0.920 4 C -0.108 4.108 5 C 0.090 3.910 6 H 0.113 0.887 7 N -0.663 5.663 8 C 0.057 3.943 9 C 0.450 3.550 10 O -0.613 6.613 11 N -0.591 5.591 12 C -0.326 4.326 13 H 0.056 0.944 14 C -0.016 4.016 15 N -0.936 5.936 16 Si 0.963 3.037 17 H -0.256 1.256 18 H -0.279 1.279 19 H -0.229 1.229 20 C 0.054 3.946 21 N -0.606 5.606 22 C 0.602 3.398 23 O -0.569 6.569 24 C -0.301 4.301 25 C -0.059 4.059 26 C -0.158 4.158 27 C -0.239 4.239 28 S 0.235 5.765 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.350 0.650 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.390 0.610 38 H 0.278 0.722 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.150 0.850 42 H 0.166 0.834 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.632 16.329 18.735 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.098 0.902 4 C -0.147 4.147 5 C -0.021 4.021 6 H 0.131 0.869 7 N -0.295 5.295 8 C -0.075 4.075 9 C 0.238 3.762 10 O -0.497 6.497 11 N -0.233 5.233 12 C -0.456 4.456 13 H 0.074 0.926 14 C -0.214 4.214 15 N -0.577 5.577 16 Si 0.783 3.217 17 H -0.181 1.181 18 H -0.204 1.204 19 H -0.152 1.152 20 C -0.072 4.072 21 N -0.339 5.339 22 C 0.392 3.608 23 O -0.451 6.451 24 C -0.421 4.421 25 C -0.093 4.093 26 C -0.188 4.188 27 C -0.376 4.376 28 S 0.503 5.497 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.171 0.829 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.168 0.832 42 H 0.184 0.816 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.915 15.815 16.573 24.237 hybrid contribution 0.360 0.126 2.421 2.451 sum -7.555 15.941 18.995 25.923 Atomic orbital electron populations 1.22086 0.94390 1.02254 1.02774 1.21741 0.94941 0.96619 0.83529 0.90234 1.22729 0.96864 0.99399 0.95686 1.22797 0.99504 0.92362 0.87482 0.86920 1.60112 1.03023 1.08359 1.57979 1.21748 0.92736 0.94541 0.98451 1.20965 0.82332 0.87198 0.85744 1.90562 1.44921 1.68585 1.45679 1.42025 1.13249 1.25531 1.42484 1.19000 0.99658 1.03349 1.23553 0.92633 1.26112 1.00434 0.95930 0.98954 1.69811 1.25725 1.20361 1.41829 0.85393 0.77123 0.80616 0.78580 1.18051 1.20445 1.15166 1.23527 0.96008 0.89014 0.98691 1.48342 1.52115 1.28724 1.04705 1.16859 0.78519 0.84329 0.81122 1.90785 1.44813 1.25761 1.83709 1.24603 1.17470 1.02173 0.97839 1.20987 0.96861 1.00775 0.90710 1.20242 1.02795 0.92946 1.02805 1.26054 1.06308 1.04668 1.00592 1.83453 1.54550 1.08840 1.02853 0.93618 0.89469 0.92531 0.89731 0.87869 0.82920 0.86413 0.89829 0.77437 0.91246 0.89097 0.90085 0.83206 0.81620 0.79124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.11 71.98 0.66 -2.19 16 2 C 0.13 2.42 3.43 45.34 0.16 2.57 16 3 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 4 C -0.11 -1.71 6.18 31.79 0.20 -1.52 16 5 C 0.09 1.52 3.32 46.31 0.15 1.68 16 6 H 0.11 1.66 7.92 -2.38 -0.02 1.64 16 7 N -0.66 -15.80 6.00 -488.39 -2.93 -18.73 16 8 C 0.06 1.45 6.04 85.56 0.52 1.97 16 9 C 0.45 18.52 7.82 87.66 0.69 19.21 16 10 O -0.61 -31.81 15.78 -3.07 -0.05 -31.85 16 11 N -0.59 -26.02 5.09 -306.98 -1.56 -27.58 16 12 C -0.33 -18.40 10.16 84.04 0.85 -17.54 16 13 H 0.06 3.76 7.39 -2.91 -0.02 3.74 16 14 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 15 N -0.94 -55.36 13.96 21.66 0.30 -55.06 16 16 Si 0.96 37.08 27.74 68.60 1.90 38.98 16 17 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 18 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 19 H -0.23 -7.24 6.52 99.48 0.65 -6.60 16 20 C 0.05 0.90 4.85 86.85 0.42 1.32 16 21 N -0.61 -12.26 3.07 -792.80 -2.43 -14.69 16 22 C 0.60 14.87 7.55 86.42 0.65 15.52 16 23 O -0.57 -17.62 16.10 -4.35 -0.07 -17.69 16 24 C -0.30 -6.25 6.34 24.08 0.15 -6.10 16 25 C -0.06 -1.09 10.02 21.72 0.22 -0.87 16 26 C -0.16 -2.20 10.15 21.08 0.21 -1.99 16 27 C -0.24 -3.13 10.92 66.81 0.73 -2.40 16 28 S 0.23 3.65 18.68 -56.49 -1.06 2.59 16 29 H 0.04 1.03 7.07 -2.38 -0.02 1.02 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.43 7.85 -2.39 -0.02 1.41 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.35 9.00 8.01 -89.69 -0.72 8.28 16 35 H 0.12 2.46 8.09 -2.39 -0.02 2.44 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.39 13.96 5.76 -92.71 -0.53 13.43 16 38 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.09 1.38 5.78 -10.35 -0.06 1.32 16 40 H 0.08 1.36 7.60 -2.39 -0.02 1.34 16 41 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 42 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -78.76 367.18 -0.12 -78.89 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: -0.30 Total: 35.86 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 6.07 Total: 9.28 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -6.62 Total: -116.06 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -0.12 Total: -49.54 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 1.90 Total: 38.98 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.06 Total: 2.59 kcal Total: -78.76 -0.12 -78.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507301091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.590 kcal (2) G-P(sol) polarization free energy of solvation -78.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds