Wall clock time and date at job start Tue Mar 31 2020 20:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.00068 * 2 1 4 4 C 1.54338 * 109.77612 * 121.16004 * 2 1 3 5 5 C 1.55157 * 103.02196 * 97.49850 * 4 2 1 6 6 H 1.08996 * 111.00197 * 277.23350 * 5 4 2 7 7 N 1.46900 * 111.00465 * 153.38027 * 5 4 2 8 8 C 1.46900 * 111.00043 * 161.34689 * 7 5 4 9 9 C 1.50697 * 109.47362 * 179.97438 * 8 7 5 10 10 O 1.21296 * 119.99586 * 0.02562 * 9 8 7 11 11 N 1.34768 * 120.00189 * 180.02562 * 9 8 7 12 12 C 1.37103 * 120.00196 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99727 * 0.02562 * 12 11 9 14 14 C 1.38946 * 120.00239 * 179.97438 * 12 11 9 15 15 N 1.31418 * 120.00127 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00281 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46606 * 90.00155 * 16 14 12 18 18 H 1.48497 * 109.47159 * 210.00077 * 16 14 12 19 19 H 1.48500 * 109.47016 * 330.00836 * 16 14 12 20 20 C 1.54908 * 101.57959 * 35.30750 * 5 4 2 21 21 N 1.47026 * 109.88637 * 238.89775 * 2 1 3 22 22 C 1.34776 * 125.64687 * 59.55989 * 21 2 1 23 23 O 1.21704 * 119.99723 * 3.28817 * 22 21 2 24 24 C 1.46572 * 120.00066 * 183.28858 * 22 21 2 25 25 C 1.36651 * 125.46134 * 173.39624 * 24 22 21 26 26 C 1.37465 * 113.30011 * 179.97438 * 25 24 22 27 27 C 1.33823 * 115.10219 * 0.24903 * 26 25 24 28 28 S 1.70615 * 110.95190 * 359.62209 * 27 26 25 29 29 H 1.09002 * 109.46907 * 179.64641 * 1 2 3 30 30 H 1.09002 * 109.47438 * 299.64664 * 1 2 3 31 31 H 1.09001 * 109.47060 * 59.64601 * 1 2 3 32 32 H 1.09005 * 110.85068 * 339.02754 * 4 2 1 33 33 H 1.08999 * 110.51450 * 215.80975 * 4 2 1 34 34 H 1.00903 * 111.00216 * 285.30690 * 7 5 4 35 35 H 1.08993 * 109.47138 * 300.00258 * 8 7 5 36 36 H 1.08998 * 109.46717 * 59.99885 * 8 7 5 37 37 H 0.97003 * 119.99939 * 0.02562 * 11 9 8 38 38 H 0.96996 * 120.00258 * 179.97438 * 15 14 12 39 39 H 1.09008 * 110.36311 * 204.15535 * 20 5 4 40 40 H 1.08994 * 110.46178 * 81.87638 * 20 5 4 41 41 H 1.08002 * 123.34875 * 359.94988 * 25 24 22 42 42 H 1.08006 * 122.45269 * 179.97438 * 26 25 24 43 43 H 1.07994 * 124.52271 * 179.75131 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7515 1.2428 5 6 2.3561 -2.1697 0.6917 6 1 1.4521 -2.7778 0.6582 7 7 3.4028 -2.8293 1.4838 8 6 3.3885 -4.2824 1.2690 9 6 4.4737 -4.9231 2.0954 10 8 5.1883 -4.2367 2.7950 11 7 4.6501 -6.2586 2.0572 12 6 5.6370 -6.8416 2.8095 13 1 6.2728 -6.2305 3.4330 14 6 5.8185 -8.2186 2.7705 15 7 5.0446 -8.9622 2.0121 16 14 7.1627 -9.0129 3.7960 17 1 6.6199 -9.3720 5.1308 18 1 7.6475 -10.2389 3.1126 19 1 8.2891 -8.0592 3.9600 20 6 2.8614 -1.8466 -0.7366 21 7 2.0301 -0.7142 -1.1838 22 6 1.7755 -0.3847 -2.4657 23 8 1.1265 0.6129 -2.7201 24 6 2.2802 -1.2279 -3.5532 25 6 1.9845 -1.0737 -4.8784 26 6 2.5956 -2.0052 -5.6838 27 6 3.3613 -2.8955 -5.0421 28 16 3.3636 -2.5995 -3.3618 29 1 -0.3633 -1.0277 -0.0063 30 1 -0.3634 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 1.2884 -0.7949 2.0193 33 1 2.9605 -0.2814 1.6198 34 1 4.3112 -2.4419 1.2767 35 1 2.4199 -4.6841 1.5662 36 1 3.5620 -4.4954 0.2142 37 1 4.0788 -6.8075 1.4974 38 1 5.1716 -9.9234 1.9846 39 1 2.7178 -2.7050 -1.3929 40 1 3.9125 -1.5595 -0.7130 41 1 1.3349 -0.2976 -5.2554 42 1 2.4637 -2.0202 -6.7556 43 1 3.9067 -3.6935 -5.5237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507301092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:56 Heat of formation + Delta-G solvation = -49.569135 kcal Electronic energy + Delta-G solvation = -26415.589010 eV Core-core repulsion = 22586.594095 eV Total energy + Delta-G solvation = -3828.994915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49979 -40.14297 -39.28709 -38.15577 -36.23375 -35.57816 -33.38981 -33.22380 -31.07018 -30.48703 -27.91261 -27.00491 -26.19166 -25.59126 -23.63445 -22.28534 -21.15579 -20.78375 -20.07001 -19.87368 -19.12614 -17.93966 -17.43772 -17.04932 -16.76960 -16.68298 -16.34334 -16.02466 -15.77122 -15.51160 -15.21816 -14.70132 -14.49868 -14.25220 -14.20132 -13.94788 -13.76334 -13.68670 -13.52585 -13.40923 -13.26996 -13.10202 -12.94934 -12.82207 -12.57666 -12.38296 -12.11381 -11.97894 -11.67100 -11.58309 -11.47194 -11.18713 -10.31185 -10.10894 -9.97716 -9.75647 -9.53910 -9.35927 -8.43799 -5.91785 -0.52186 0.46536 0.93608 1.36887 1.40061 1.44509 1.56291 1.72522 2.08619 2.09570 2.31205 2.84614 3.24104 3.31748 3.37976 3.66080 3.72762 3.98008 4.04275 4.12251 4.18825 4.27747 4.34948 4.35827 4.44132 4.50562 4.56181 4.59850 4.68248 4.69695 4.92358 4.97395 5.04983 5.10432 5.19005 5.27806 5.34941 5.39436 5.44634 5.87887 6.09478 6.25312 6.35493 6.63557 6.91579 7.16450 7.60660 8.15803 8.73380 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013673 B = 0.002759 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.299523 B =10146.175606 C =11819.652454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 H 0.076 0.924 4 C -0.108 4.108 5 C 0.090 3.910 6 H 0.108 0.892 7 N -0.659 5.659 8 C 0.061 3.939 9 C 0.439 3.561 10 O -0.622 6.622 11 N -0.573 5.573 12 C -0.331 4.331 13 H 0.079 0.921 14 C -0.011 4.011 15 N -0.920 5.920 16 Si 0.989 3.011 17 H -0.273 1.273 18 H -0.272 1.272 19 H -0.273 1.273 20 C 0.057 3.943 21 N -0.606 5.606 22 C 0.601 3.399 23 O -0.567 6.567 24 C -0.301 4.301 25 C -0.057 4.057 26 C -0.157 4.157 27 C -0.243 4.243 28 S 0.231 5.769 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.350 0.650 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.152 0.848 42 H 0.167 0.833 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.213 12.032 -13.420 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.031 3.969 3 H 0.094 0.906 4 C -0.146 4.146 5 C -0.022 4.022 6 H 0.126 0.874 7 N -0.291 5.291 8 C -0.071 4.071 9 C 0.227 3.773 10 O -0.509 6.509 11 N -0.210 5.210 12 C -0.461 4.461 13 H 0.097 0.903 14 C -0.211 4.211 15 N -0.561 5.561 16 Si 0.813 3.187 17 H -0.198 1.198 18 H -0.197 1.197 19 H -0.197 1.197 20 C -0.070 4.070 21 N -0.339 5.339 22 C 0.392 3.608 23 O -0.449 6.449 24 C -0.421 4.421 25 C -0.091 4.091 26 C -0.187 4.187 27 C -0.380 4.380 28 S 0.500 5.500 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.171 0.829 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.169 0.831 42 H 0.184 0.816 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.740 12.059 -11.390 18.304 hybrid contribution 0.145 -0.233 -2.144 2.161 sum -7.595 11.825 -13.533 19.511 Atomic orbital electron populations 1.22098 0.93908 1.02560 1.02901 1.21743 0.95349 0.96300 0.83474 0.90621 1.22714 1.03064 0.93055 0.95761 1.22785 0.95610 0.96277 0.87499 0.87366 1.60131 1.09149 1.02113 1.57692 1.21640 0.98356 0.89019 0.98117 1.20847 0.87803 0.82409 0.86289 1.90509 1.50924 1.63128 1.46324 1.41921 1.31627 1.06151 1.41332 1.19644 1.11770 0.91238 1.23435 0.90319 1.25971 1.00429 0.96237 0.98487 1.69662 1.39854 1.06810 1.39728 0.84986 0.77990 0.77650 0.78096 1.19850 1.19707 1.19735 1.23569 0.95955 0.88974 0.98470 1.48346 1.50110 1.30614 1.04787 1.16855 0.79130 0.83794 0.81061 1.90780 1.42559 1.27937 1.83598 1.24596 1.12733 1.06669 0.98097 1.20986 0.98387 0.99121 0.90647 1.20243 0.99960 0.95721 1.02802 1.26155 1.05236 1.05539 1.01052 1.83556 1.41307 1.22089 1.03060 0.92121 0.89377 0.93484 0.87680 0.89747 0.82948 0.87351 0.90923 0.76915 0.91381 0.89651 0.89857 0.83056 0.81582 0.79269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.06 71.98 0.65 -2.21 16 2 C 0.13 2.58 3.49 45.34 0.16 2.74 16 3 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.11 -1.86 6.18 31.79 0.20 -1.66 16 5 C 0.09 1.73 3.32 46.31 0.15 1.89 16 6 H 0.11 1.92 7.92 -2.39 -0.02 1.91 16 7 N -0.66 -17.29 6.00 -488.43 -2.93 -20.22 16 8 C 0.06 1.79 6.04 85.56 0.52 2.30 16 9 C 0.44 19.25 7.82 87.66 0.69 19.94 16 10 O -0.62 -32.39 15.78 -3.08 -0.05 -32.44 16 11 N -0.57 -27.70 5.29 -306.99 -1.62 -29.32 16 12 C -0.33 -18.09 9.68 84.04 0.81 -17.28 16 13 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 14 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 15 N -0.92 -47.98 13.05 21.66 0.28 -47.69 16 16 Si 0.99 41.73 29.55 68.60 2.03 43.75 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 18 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 20 C 0.06 1.08 5.18 86.85 0.45 1.53 16 21 N -0.61 -13.26 3.08 -792.81 -2.44 -15.70 16 22 C 0.60 15.73 7.56 86.42 0.65 16.39 16 23 O -0.57 -18.12 15.87 -4.36 -0.07 -18.19 16 24 C -0.30 -6.74 6.37 24.07 0.15 -6.59 16 25 C -0.06 -1.13 10.02 21.72 0.22 -0.91 16 26 C -0.16 -2.43 10.15 21.08 0.21 -2.22 16 27 C -0.24 -3.64 10.92 66.82 0.73 -2.91 16 28 S 0.23 4.10 18.55 -56.49 -1.05 3.05 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.08 6.85 -2.39 -0.02 1.07 16 32 H 0.10 1.58 7.83 -2.38 -0.02 1.56 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 34 H 0.35 9.68 8.01 -89.69 -0.72 8.96 16 35 H 0.11 2.83 8.09 -2.39 -0.02 2.81 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.40 18.12 7.90 -92.71 -0.73 17.39 16 38 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 39 H 0.09 1.56 4.92 -17.49 -0.09 1.47 16 40 H 0.08 1.57 7.81 -2.39 -0.02 1.55 16 41 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 42 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 43 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -69.67 369.44 -0.26 -69.93 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: -0.47 Total: 35.97 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 6.06 Total: 10.88 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -6.71 Total: -112.94 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.12 Total: -50.63 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.05 Total: 3.05 kcal Total: -69.67 -0.26 -69.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507301092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.357 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds