Wall clock time and date at job start Tue Mar 31 2020 20:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 110.32929 * 2 1 4 4 C 1.54918 * 110.36468 * 122.23108 * 2 1 3 5 5 C 1.55159 * 101.58227 * 155.95814 * 4 2 1 6 6 H 1.09000 * 110.71966 * 83.03761 * 5 4 2 7 7 N 1.46893 * 110.72172 * 206.13810 * 5 4 2 8 8 C 1.46903 * 111.00304 * 202.55957 * 7 5 4 9 9 C 1.50696 * 109.47177 * 179.97438 * 8 7 5 10 10 O 1.21292 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99627 * 179.97438 * 9 8 7 12 12 C 1.37090 * 119.99714 * 180.02562 * 11 9 8 13 13 H 1.07999 * 120.00232 * 0.02562 * 12 11 9 14 14 C 1.38955 * 119.99992 * 180.02562 * 12 11 9 15 15 N 1.31413 * 120.00236 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00316 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00267 * 16 14 12 19 19 H 1.48504 * 109.46913 * 150.00066 * 16 14 12 20 20 C 1.54330 * 103.10026 * 324.59002 * 5 4 2 21 21 N 1.47314 * 107.12258 * 21.97474 * 20 5 4 22 22 C 1.34777 * 125.61843 * 181.11179 * 21 20 5 23 23 O 1.21694 * 120.00023 * 180.22716 * 22 21 20 24 24 C 1.46585 * 119.99754 * 0.21897 * 22 21 20 25 25 C 1.36638 * 125.45921 * 179.72145 * 24 22 21 26 26 C 1.37474 * 113.30135 * 179.83875 * 25 24 22 27 27 C 1.33814 * 115.09598 * 0.45797 * 26 25 24 28 28 S 1.70620 * 110.95792 * 359.74286 * 27 26 25 29 29 H 1.09000 * 109.47692 * 297.76495 * 1 2 3 30 30 H 1.09003 * 109.47324 * 57.77103 * 1 2 3 31 31 H 1.09004 * 109.47594 * 177.76192 * 1 2 3 32 32 H 1.09004 * 111.00081 * 37.88541 * 4 2 1 33 33 H 1.09000 * 111.03998 * 274.05128 * 4 2 1 34 34 H 1.00902 * 110.99797 * 326.51157 * 7 5 4 35 35 H 1.09005 * 109.46883 * 59.99694 * 8 7 5 36 36 H 1.09002 * 109.46817 * 300.00144 * 8 7 5 37 37 H 0.96999 * 120.00048 * 0.02562 * 11 9 8 38 38 H 0.97001 * 119.99781 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.87716 * 141.52123 * 20 5 4 40 40 H 1.09001 * 109.87631 * 262.68308 * 20 5 4 41 41 H 1.08002 * 123.35195 * 0.02771 * 25 24 22 42 42 H 1.07998 * 122.45366 * 180.22523 * 26 25 24 43 43 H 1.08005 * 124.52687 * 179.76868 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0690 -0.7746 1.2286 5 6 3.4788 -1.1965 0.7367 6 1 4.1948 -0.3869 0.8779 7 7 3.9283 -2.4120 1.4283 8 6 5.3928 -2.5243 1.3975 9 6 5.8155 -3.7799 2.1155 10 8 4.9792 -4.5098 2.6044 11 7 7.1230 -4.0924 2.2135 12 6 7.5076 -5.2349 2.8662 13 1 6.7629 -5.8848 3.3015 14 6 8.8555 -5.5568 2.9677 15 7 9.2243 -6.6518 3.5939 16 14 10.1434 -4.4330 2.2142 17 1 10.4047 -4.8492 0.8129 18 1 9.6493 -3.0328 2.2307 19 1 11.4003 -4.5237 3.0000 20 6 3.2569 -1.4734 -0.7653 21 7 2.0454 -0.7382 -1.1674 22 6 1.5007 -0.7374 -2.4002 23 8 0.4960 -0.0872 -2.6211 24 6 2.1186 -1.5196 -3.4750 25 6 1.6595 -1.6033 -4.7592 26 6 2.4343 -2.4059 -5.5625 27 6 3.4863 -2.9689 -4.9566 28 16 3.5650 -2.5067 -3.3161 29 1 -0.3634 0.4787 0.9093 30 1 -0.3634 0.5481 -0.8693 31 1 -0.3634 -1.0269 -0.0401 32 1 1.4520 -1.6476 1.4415 33 1 2.1378 -0.1252 2.1013 34 1 3.5837 -2.4370 2.3763 35 1 5.8340 -1.6580 1.8906 36 1 5.7323 -2.5652 0.3625 37 1 7.7917 -3.5088 1.8222 38 1 10.1652 -6.8766 3.6644 39 1 4.1152 -1.1215 -1.3377 40 1 3.1129 -2.5415 -0.9279 41 1 0.7774 -1.0876 -5.1092 42 1 2.2083 -2.5730 -6.6053 43 1 4.1917 -3.6276 -5.4414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507301093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:59 Heat of formation + Delta-G solvation = -18.965262 kcal Electronic energy + Delta-G solvation = -26438.323605 eV Core-core repulsion = 22610.655773 eV Total energy + Delta-G solvation = -3827.667832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54183 -38.75762 -38.19400 -37.24112 -34.95058 -33.90723 -32.53081 -31.72136 -30.23487 -29.65872 -26.65287 -26.20422 -25.16545 -23.92322 -22.60936 -21.15128 -20.32912 -19.42957 -19.21595 -18.41272 -17.93412 -17.12134 -16.35642 -15.96431 -15.69124 -15.35056 -15.14608 -14.96314 -14.65208 -14.27885 -13.82979 -13.68907 -13.41916 -13.21557 -13.10285 -12.98356 -12.82565 -12.58178 -12.56565 -12.34292 -12.22042 -12.06904 -11.82973 -11.64236 -11.29880 -11.20541 -11.00132 -10.80901 -10.64056 -10.02097 -9.95137 -9.62371 -9.20479 -8.92228 -8.69886 -8.68675 -8.34846 -8.22825 -6.35570 -3.87321 0.30796 1.29534 1.72885 2.16959 2.62292 2.97879 3.01530 3.02714 3.11492 3.66982 3.86732 4.05663 4.12327 4.23877 4.57609 4.69796 4.79069 4.85944 4.89001 5.06465 5.11096 5.15860 5.19283 5.23958 5.34993 5.40115 5.46436 5.49693 5.63984 5.67301 5.70167 5.73429 5.85384 5.91331 5.96538 6.02212 6.09901 6.29401 6.93003 7.21217 7.39750 7.52836 7.90783 8.09375 8.54336 8.90143 9.37266 9.76585 10.77453 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.002921 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.400161 B = 9582.857985 C =11160.319911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.078 0.922 4 C -0.133 4.133 5 C 0.080 3.920 6 H 0.065 0.935 7 N -0.657 5.657 8 C 0.045 3.955 9 C 0.449 3.551 10 O -0.564 6.564 11 N -0.589 5.589 12 C -0.306 4.306 13 H 0.120 0.880 14 C 0.042 3.958 15 N -0.880 5.880 16 Si 0.879 3.121 17 H -0.270 1.270 18 H -0.270 1.270 19 H -0.277 1.277 20 C 0.091 3.909 21 N -0.610 5.610 22 C 0.609 3.391 23 O -0.532 6.532 24 C -0.272 4.272 25 C -0.057 4.057 26 C -0.154 4.154 27 C -0.248 4.248 28 S 0.233 5.767 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.359 0.641 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.370 0.630 38 H 0.274 0.726 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.151 0.849 42 H 0.142 0.858 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.778 15.197 -14.181 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.096 0.904 4 C -0.171 4.171 5 C -0.031 4.031 6 H 0.083 0.917 7 N -0.291 5.291 8 C -0.088 4.088 9 C 0.234 3.766 10 O -0.445 6.445 11 N -0.229 5.229 12 C -0.435 4.435 13 H 0.138 0.862 14 C -0.161 4.161 15 N -0.520 5.520 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.195 1.195 19 H -0.202 1.202 20 C -0.034 4.034 21 N -0.345 5.345 22 C 0.398 3.602 23 O -0.411 6.411 24 C -0.392 4.392 25 C -0.091 4.091 26 C -0.185 4.185 27 C -0.385 4.385 28 S 0.502 5.498 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.181 0.819 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.169 0.831 42 H 0.159 0.841 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.805 14.119 -13.312 22.211 hybrid contribution 0.794 1.519 -1.314 2.160 sum -10.011 15.638 -14.626 23.637 Atomic orbital electron populations 1.22137 0.93449 1.03148 1.03283 1.21868 0.95592 0.95219 0.83568 0.90389 1.23116 0.95662 1.01257 0.97073 1.22433 0.96324 0.91777 0.92561 0.91690 1.59998 1.09535 1.35899 1.23717 1.21815 0.88549 0.97043 1.01372 1.19645 0.83034 0.88248 0.85633 1.90578 1.50730 1.52394 1.50837 1.42201 1.05764 1.23343 1.51552 1.19429 0.93745 0.98929 1.31351 0.86250 1.25047 0.97105 0.96613 0.97360 1.69621 1.17352 1.23665 1.41364 0.86678 0.82181 0.80488 0.80060 1.19567 1.19515 1.20178 1.22354 0.86744 0.98211 0.96067 1.48405 1.28142 1.48780 1.09129 1.16518 0.83058 0.80507 0.80104 1.90769 1.24754 1.43948 1.81604 1.24622 1.04698 1.10778 0.99115 1.20740 1.00032 0.97422 0.90944 1.20007 0.96121 1.00558 1.01829 1.25731 1.04072 1.06922 1.01812 1.83772 1.22119 1.38978 1.04959 0.91863 0.89741 0.92357 0.88928 0.89410 0.81932 0.93370 0.89406 0.79688 0.91566 0.90902 0.88807 0.83121 0.84074 0.81581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.60 37.15 0.32 -1.31 16 2 C 0.14 1.37 3.76 -66.42 -0.25 1.12 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.13 -1.17 5.91 -24.58 -0.15 -1.32 16 5 C 0.08 0.81 3.25 -65.88 -0.21 0.60 16 6 H 0.07 0.58 7.86 -51.93 -0.41 0.17 16 7 N -0.66 -8.78 5.93 -106.05 -0.63 -9.41 16 8 C 0.04 0.66 6.03 -4.98 -0.03 0.63 16 9 C 0.45 9.52 7.82 -10.98 -0.09 9.43 16 10 O -0.56 -14.37 15.78 5.55 0.09 -14.29 16 11 N -0.59 -13.33 5.09 -10.96 -0.06 -13.39 16 12 C -0.31 -8.38 10.16 -14.93 -0.15 -8.53 16 13 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 14 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 15 N -0.88 -25.20 13.96 55.50 0.77 -24.42 16 16 Si 0.88 18.70 27.74 -169.99 -4.71 13.99 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.27 -5.16 6.52 56.52 0.37 -4.80 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 20 C 0.09 0.96 4.92 -2.90 -0.01 0.95 16 21 N -0.61 -6.92 3.25 -164.37 -0.53 -7.45 16 22 C 0.61 7.93 7.60 -12.89 -0.10 7.83 16 23 O -0.53 -8.06 14.56 5.19 0.08 -7.98 16 24 C -0.27 -3.15 6.38 -36.80 -0.23 -3.39 16 25 C -0.06 -0.60 10.01 -40.44 -0.40 -1.00 16 26 C -0.15 -1.37 10.15 -41.41 -0.42 -1.79 16 27 C -0.25 -2.19 10.92 29.18 0.32 -1.87 16 28 S 0.23 2.30 18.43 -107.50 -1.98 0.32 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.01 6.09 -51.93 -0.32 0.69 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.92 8.06 -51.93 -0.42 0.50 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.36 4.96 8.16 -39.29 -0.32 4.64 16 35 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.37 7.29 5.76 -40.82 -0.24 7.06 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.07 0.69 7.01 -51.93 -0.36 0.33 16 40 H 0.09 1.12 6.70 -51.93 -0.35 0.77 16 41 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 42 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -33.29 364.78 -8.75 -42.05 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.77 Total: 12.73 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.51 Total: 2.35 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.44 Total: -54.67 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.16 Total: -22.27 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.71 Total: 13.99 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.98 Total: 0.32 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.29 -8.75 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507301093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.080 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds